• 제목/요약/키워드: turn sequence

검색결과 112건 처리시간 0.02초

pVC, a Small Cryptic Plasmid from the Environmental Isolate of Vibrio cholerae MP-1

  • Zhang, Ruifu;Wang, Yanling;Leung, Pak Chow;Gu, Ji-Dong
    • Journal of Microbiology
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    • 제45권3호
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    • pp.193-198
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    • 2007
  • A marine bacterium was isolated from Mai Po Nature Reserve of Hong Kong and identified as Vibrio cholerae MP-1. It contains a small plasmid designated as pVC of 3.8 kb. Four open reading frames (ORFs) are identified on the plasmid, but none of them shows homology to any known protein. Database search indicated that a 440 bp fragment is 96% identical to a fragment found in a small plasmid of another V. cholerae. Further experiments demonstrated that a 2.3 kb EcoRI fragment containing the complete ORF1, partial ORF4 and their intergenic region could self-replicate. Additional analyses revealed that sequence upstream of ORF1 showed the features characteristic of theta type replicons. Protein encoded by ORF1 has two characteristic motifs existed in most replication initiator proteins (Rep): the leucine zipper (LZ) motif located at the N-terminal region and the alpha helix-turn-alpha helix motif (HTH) located at the C-terminal end. The results suggest that pVC replicates via the theta type mechanism and is likely a novel type of theta replicon.

Design and Expression of High Nutritional Peptide (HEAAE) in E. coli

  • Kim, Jae-Ho;Lee, Chang-Kook;Hong, Bum-Shik
    • Journal of Microbiology and Biotechnology
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    • 제7권2호
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    • pp.132-137
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    • 1997
  • A novel protein (HEAAE, High Essential Amino Acid Encoding Protein), rich in essential amino acids ($75{\%}$ of total), was designed and constructed in our laboratory. The designed peptides were analyzed by SYBLE and stable secondary and tertiary structures were predicted. The monomeric form (HEAAE-1) of the protein consists of 20 amino acid residues with four additional amino acids comprising a potential ${\beta}$-turn (HEAAE-4). Size exclusion analysis demonstrated that the monomer is self-aggregates in aqueous solution to form higher ordered multimeric structures, which are very reminiscent of natural plant storage proteins. The DNA encoding this amino acid sequence was synthesized, and from this monomeric gene fragment (heaae-1), the stable tetrameric form of the gene (heaae-4) was generated by subcloning into the E. coli expression vector pKK223-3. A clear 6 kDa polypeptide band corresponding to the molecular weight of the dimeric form (HEAAE-2) was detected. The smeared band which appeared around the molecular weight corresponding to HEAAE-4 of 11 kDa suggested that the tetramer form of this protein might be processed into smaller size products.

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Efficient Cloning of the Genes for RNA Polymerase Sigma-like Factors from Actinomycetes

  • Kim, Soon-Ok;Hyun, Chang-Gu;Suh, Joo-Won
    • Journal of Microbiology and Biotechnology
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    • 제8권3호
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    • pp.280-283
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    • 1998
  • We have cloned the RNA polymerase sigma-like factors from a wide range of actinomycetes by using specific primers with the polymerase chain reaction (PCR). The specific oligonucleotide primers were designed on the basis of amino acid sequences of conserved regions from HrdA, B, D of Streptomyces griseus as well as from the rpoD box of many eubacteria. The consensus sequences were from the rpoD box and helix-turn-helix motif involved in -35 recognition. The designed primers were successfully applied to amplify the DNA fragments of the hrd homolog genes from 8 different strains of actinomycetes which produce a wide variety of important antibiotics. The 480 bp of the DNA fragment was amplified from all 8 strains, and it was identified as a part of hrdA and hrdB as we designed. The deduced amino acid sequence of PCR-amplified DNA fragments were highly homologous to those of other known RNA polymerase sigma factors of S. griseus and Streptomyces aureofaciens. Therefore, this study with specifically designed primers will support rapid cloning of the RNA polymerase sigma factors which recognize different classes of promoters from actinomycetes, and it will also be helpful in understanding the relationship of promoters and sigma factors leading to heterogeneity of RNA polymerases in actinomycetes.

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NMR Studies of Zinc-binding Luteinizing Hormone Releasing Hormone

  • Kim, Dae-Sung;Lee, Mi-Sun;Lee, Chang-Jun;Won, Ho-Shik
    • 한국자기공명학회논문지
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    • 제10권2호
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    • pp.163-174
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    • 2006
  • Luteinizing Hormone Releasing Hormone(LHRH) is a decapeptide neurotransmitter known to be regulated by metal ions in the hyperthalamus. Zn-binding LHRH complex was systhesized, and zinc-LHRH complex was studied to understand what kinds of structural modifications would be critical in the LHRH releasing mechanism. Both nonexchangeable and exchangeable $^1H-NMR$ signal assignments were accomplished by pH-dependent and COSY NMR experiments. In addition, $^1H-NMR$ chemical shift changes of a-proton and peptide NH NMR signals at different pH condition, and $^1H-NMR$ signal differences between metal free and metallo-LHRH complex was monitored. NMR signals exhibit that primary metal-binding sites are nitrogens donor of imidazole ring and Arg, and peptide oxygen of Pro-His in the sequence. Structure obtained in this study has a cyclic conformation which is similar to that of energy minimized, and exhibits a specific a-helical turn with residue numbers $(2{\sim}7)$ out of 10 amino acids.

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A New Communication Network Model for Chat Agents in Virtual Space

  • Kim, Jong-Woo;Ji, Seong-Hyun;Kim, Seon-Yeong;Cho, Hwan-Gue
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제5권2호
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    • pp.287-312
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    • 2011
  • Internet chat programs and instant messaging services are becoming increasingly popular among Internet users. One of the crucial issues with Internet chat is how to manage the corresponding pairs of questions and answers in a sequence of conversations. Although many novel methodologies have been introduced to cope with this problem, most are poor in managing interruptions, organizing turn-taking, and conveying comprehension. The Internet environment is recently evolving into a 3D environment, but the problems with managing chat dialogues with the standard 2D text-based chat have remained. Therefore, we propose a more realistic communication model for chat agents in 3D virtual space in this paper. First, we propose a new method to measure the capacity of communication between chat agents and a novel visualization method to depict the hierarchical structure of chat dialogues. In addition, we are concerned with communication networks for virtual people (avatars) living in virtual worlds. In this paper we consider a microscopic aspect of a social network in a relatively short period of time. Our experiments show that our model is highly effective in a virtual chat environment, and the communication network based on our model greatly facilitates investigation of a very large and complicated communication network.

Effects of Zero-Sequence Transformations and Min-Max Injection on Fault-Tolerant Symmetrical Six-Phase Drives with Single Isolated Neutral

  • Munim, Wan Noraishah Wan Abdul;Tousizadeh, Mahdi;Che, Hang Seng
    • Journal of Power Electronics
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    • 제19권4호
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    • pp.968-979
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    • 2019
  • Recently, there has been increased interest in the study of multiphase machines due to their higher fault-tolerant capability when compared to their conventional three-phase counterparts. For six-phase machines, stator windings configured with a single isolated neutral (1N) provide significantly more post-fault torque/power than two isolated neutrals (2N). Hence, this configuration is preferred in applications where post-fault performance is critical. It is well known that min-max injection has been commonly used for three-phase and multiphase machines in healthy condition to maximize the modulation limit. However, there is a lack of discussion on min-max injection for post-fault condition. Furthermore, the effects in terms of the common-mode voltage (CMV) in modulating signals has not been discussed. This paper investigates the effect of min-max injection in post fault-tolerant control on the voltage and speed limit of a symmetrical six-phase induction machine with single isolated neutral. It is shown that the min-max injection can minimize the amplitude of reference voltage, which maximizes the modulation index and post-fault speed of the machine. This in turn results in a higher post-fault power.

전기자동차 급속충전기용 넓은 전압 범위를 갖는 30kW급 SiC MOSFET 기반 고속 스위칭 LLC 컨버터 설계 및 병렬 운전 (Design and Parallel Operation of 30 kW SiC MOSFET-Based High Frequency Switching LLC Converter With a Wide Voltage Range for EV Fast Charger)

  • 이기영;민성수;박수성;조영찬;이상택;김래영
    • 전력전자학회논문지
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    • 제27권2호
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    • pp.165-173
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    • 2022
  • The electrification trend of mobility increases every year due to the development of power semiconductor and battery technology. Accordingly, the development and distribution of fast chargers for electric vehicles (EVs) are in demand. In this study, we propose a design and implementation method of an LLC converter for fast chargers. Two 15 kW LLC converters are configured in parallel to have 30 kW rated output power, and the control algorithm and driving sequence are designed accordingly and verified. In addition, the improved power conversion efficiency is confirmed through zero-voltage switching (ZVS) of the LLC converter and reduction of turn-off loss through snubber capacitors. The implemented 30 kW LLC converters show a wide output voltage range of 200-950 V. Experiments applying various load conditions verify the converter performance.

임베디드 플랫폼을 위한 화재 조기 감지 시스템: 오경보 최소화를 위한 딥러닝 접근 방식 (Early Fire Detection System for Embedded Platforms: Deep Learning Approach to Minimize False Alarms)

  • 노성준;이광재
    • 센서학회지
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    • 제33권5호
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    • pp.298-304
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    • 2024
  • In Korea, fires are the second most common type of disaster, causing large-scale damages. The installation of fire detectors is legislated to prevent fires and minimize damage. Conventional fire detectors have limitations in initial suppression of failures because they detect fires when large amounts of smoke and heat are generated. Additionally, frequent malfunctions in fire detectors may cause users to turn them off. To address these issues, recent studies focus on accurately detecting even small-scale fires using multi-sensor and deep-learning technologies. They also aim at quick fire detection and thermal decomposition using gas. However, these studies are not practical because they overlook the heavy computations involved. Therefore, we propose a fast and accurate fire detection system based on multi-sensor and deep-learning technologies. In addition, we propose a computation-reduction method for selecting sensors suitable for detection using the Pearson correlation coefficient. Specifically, we use a moving average to handle outliers and two-stage labeling to reduce false detections during preprocessing. Subsequently, a deep-learning model is selected as LSTM for analyzing the temporal sequence. Then, we analyze the data using a correlation analysis. Consequently, the model using a small data group with low correlation achieves an accuracy of 99.88% and a false detection rate of 0.12%.

장치장 블록의 작업부하를 고려한 안벽크레인 작업계획 (Quay Crane Scheduling Considering the Workload of Yard Blocks in an Automated Container Terminal)

  • 이승환;최이;박태진;김갑환;류광렬
    • 지능정보연구
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    • 제14권4호
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    • pp.103-116
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    • 2008
  • 본 논문은 컨테이너 터미널에서 장치장의 작업부하가 고르게 분산되도록 안벽크레인의 작업을 계획함으로써 장치장의 컨테이너 처리능력을 최대로 활용할 수 있는 두 가지 알고리즘을 제안한다. 두 제안방안 모두 선적 작업을 진행하는 동안 안벽크레인의 컨테이너 반출 요청이 특정 블록에 집중 되지 않고 전체 블록에 고르게 분산될 수 있도록 안벽크레인이 작업할 선박 베이(ship bay)의 순서를 결정한다. 첫 번째 제안 방안은 장치장 블록의 작업부하의 엔트로피(entropy)를 계산하여 이를 최대화하도록 다음에 작업할 베이를 결정하는 휴리스틱(heuristic)알고리즘이다. 두 번째 방안은 유전 알고리즘(genetic algorithm, GA)을 이용하여 최적의 선박 베이 작업순서를 탐색한다. 유전 알고리즘의 각 염색체(chromosome)의 적합도(fitness)를 계산하기 위해 장치장의 작업부하 분포를 고려하여 안벽크레인의 작업시간을 계산하는 알고리즘을 고안하였다. 제안한 두 가지 방안으로 선박 베이 작업순서를 조정한 안벽크레인 작업계획과 기존 작업계획을 비교 실험한 결과 선박의 총 적하 시간이 단축되는 것을 확인하였다.

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시퀀스 내러티브 관점에 따른 '오설록 티하우스' 공간의 제품 전시 디자인 사례 연구 (A Case Study of Display Design of Space 'O'sulloc Teahouse' from the Point of Sequence Narrative)

  • 양현정;이현수
    • 한국실내디자인학회논문집
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    • 제23권1호
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    • pp.61-68
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    • 2014
  • Recently, there have been increasing attempts to pursue and express feelings such as sensibilities, emotions, and impressiveness in commercial spaces. One of such methods is to apply 'storytelling' to space designs. Applicability of storytelling to a space suggests that the contents of a space can be expressed through various mediums. Portraying events and situations through a single time continuity of a story is referred to as 'narrative'. The movement of users and sequence of contents are determined by a narrative. It provides different storytelling and a sense of place to each space through various roles, such as wide association, engraving, and image formation. A narrative can lead users to engage in different perceptions and behaviors even in spaces with the same content. Thus, this study is intended to examine the impact of space marketing in line with design narratives, assuming that narratives of commercial space designs will influence the formation of brand identity. The research methods are as follows. First, the definition of narratives in space design was established by examining narrative architectures. Second, design analysis tools for commercial spaces were established from the perspective of narratives through preceding studies. Third, the design narratives of different shops under the same brand were comparatively analyzed through a case study. To carry out a case study, a commercial space of 'O'sulloc' was selected, and its brand identity was studied from the narrative standpoint. The case study involved interior designs of 7 road shops of 'O'sulloc.' Among the 7 road shops, two of them with the biggest difference in design narratives were selected, and an observation survey was done on the users as a second analysis. Through the observation survey, actual design narrative experience was analyzed in 4 steps of introduction, development, turn, and conclusion. The findings are as follows. The design method of each shop varied, and different design elements were emphasized. Among various elements, the ones that reflect the brand identity of 'O'sulloc' the best were logo, product, and shape. During the process of narratives, the characteristics of each shop and user recognition and behavior varied depending on the degree of emphasis on a particular element. It suggests that space design narratives can influence the formation of brand identity. This study provides ideal directions of developing space designs necessary for forming brand identity from the standpoint of Korean traditional culture modernization. Future studies could discuss the economic feasibility of such designs.