• 제목/요약/키워드: training parameters

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Prediction of Protein Kinase Specific Phosphorylation Sites with Multiple SVMs

  • Lee, Won-Chul;Kim, Dong-Sup
    • Bioinformatics and Biosystems
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    • v.2 no.1
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    • pp.28-32
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    • 2007
  • The protein phosphorylation is one of the important processes in the cell signaling pathway. A variety of protein kinase families are involved in this process, and each kinase family phosphorylates different kinds of substrate proteins. Many methods to predict the kinase-specific phosphoryrated sites or different types of phosphorylated residues (Serine/Threonine or Tyrosin) have been developed. We employed Supprot Vector Machine (SVM) to attempt the prediction of protein kinase specific phosphorylation sites. 10 different kinds of protein kinase families (PKA, PKC, CK2, CDK, CaM-KII, PKB, MAPK, EGFR) were considered in this study. We defined 9 residues around a phosphorylated residue as a deterministic instance from which protein kinases determine whether they act on. The subsets of PSI-BALST profile was converted to the numerical vectors to represent positive or negative instances. When SVM training, We took advantage of multiple SVMs because of the unbalanced training sets. Representative negative instances were drawn multiple times, and generated new traing sets with the same positive instances in the original traing set. When testing, the final decisions were made by the votes of those multiple SVMs. Generally, RBF kernel was used for the SVMs, and several parameters such as gamma and cost factor were tested. Our approach achieved more than 90% specificity throughout the protein kinase families, while the sensitivities recorded 60% on average.

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Development of Grip Strength Training and Evaluation System of Hand Functions (악력 훈련 및 평가를 위한 측정 시스템 개발에 관한 연구)

  • Kang, Han-Su;Chung, Sung-Taek
    • Korean Journal of Applied Biomechanics
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    • v.19 no.3
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    • pp.611-617
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    • 2009
  • The primary purpose of this study was to analysis quantitatively the degree of injury and/or the progress of treatment for physical impairment. This study provided a more detailed study that evaluates all test parameters including maximum grip strength, duration of operation, average grip strength, acceleration work, dynamic endurance time and percent change in static endurance. Also, a complete database management system is developed and used to store related training, evaluation, and personal information. In addition, the system is developed a grip sensor using load.cell transducer (${\leq}60kg$). The system will be efficient to operate and convenient to use, furthermore, it can be helped for understanding and analysis the progress of a patient during a doctor's rehabilitation program.

Reproducibility of Measures of Lumbar Spine, Hip and Whole Body BMD according to Longitudinal Physical Activity in Older Athletes (노인 운동가에 있어 장기적인 운동에 따른 척추, 힙과 신체 총 골밀도 감소에 관한 재현성)

  • Jung, Youn-Soo
    • Journal of muscle and joint health
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    • v.8 no.2
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    • pp.278-286
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    • 2001
  • With the aging of society a great deal of interest is being placed on the value of longitudinal data in evaluating physiological losses. We present data on test-one/test-two reliability and reproducibility for measures of training, bone density from a longitudinal study of master athletes. Fifty-two males (mean age at test $1=58.2{\pm}9.8\;years$) and thirty-two females ($54.4{\pm}8.8\;years$) were selected from the study population. Bone mineral density was determined using DEXA (Hologic 1500). The characteristics of the subjects are presented below as $means\;{\pm}\;S.D$. The data was imported into the Statistical Package for the Social Science (SPSS 9.0, Chicago, IL). Paired t-tests were performed between visit 1 and visit 2 in subjects. Pearson correlations were performed. The results of this study indicate the measures of training history, body mass and bone density are reasonably stable and reproducible. We conclude that body composition and bone density parameters are stable and reproducible over time in active older subjects. Physiologic measures in master athletes are fairly stable, and reproducible over time Longitudinal studies investigating age-related changes in master athletes need to be conducted on a time schedule of greater than two years.

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Characteristics of a Small SC Coil for fabrication of the 0.7 MJ $\mu$SMES Coil (0.7 MJ $\mu$SMES코일 제작을 위한 소형 초전도코일의 특성)

  • Ryu, Gyeong-U;Kim, Hae-Jong;Seong, Gi-Cheol;Ryu, Gang-Sik
    • The Transactions of the Korean Institute of Electrical Engineers B
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    • v.48 no.1
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    • pp.13-18
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    • 1999
  • To fabricate a 0.7 FJ, 100 kVA $\mu$SMES device for improving power quality in sensitive electric loads, we developed a design code for a $\mu$SMES device and designed the 0.7 MJ $\mu$SMES device by using it. In this study special emphasis was placed in influence of winding tensions on quench currents of superconducting coils because dry superconducting coils are usually quenched by local disturbances due to strand motions. We first investigated the quench currents of a few kA class superconducting cables for various winding tensions experimentally. To prove the validity of the code and develop all techniques related to fabrication and test of the 0.7 MJ $\mu$SMES device, a smaller size superconducting coil was wound with high winding tension of about 15 kgf/$mm^2$ based on the test results of superconducting cables and tested. It isshown form the test results that designed parameters for the smaller size superconducting coil are in good agreements with measured ones and the quench current of the coil with high winding tension reaches nearly to the critical current of the superconducting cable without any training effects.

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Data Mining-Aided Automatic Landslide Detection Using Airborne Laser Scanning Data in Densely Forested Tropical Areas

  • Mezaal, Mustafa Ridha;Pradhan, Biswajeet
    • Korean Journal of Remote Sensing
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    • v.34 no.1
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    • pp.45-74
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    • 2018
  • Landslide is a natural hazard that threats lives and properties in many areas around the world. Landslides are difficult to recognize, particularly in rainforest regions. Thus, an accurate, detailed, and updated inventory map is required for landslide susceptibility, hazard, and risk analyses. The inconsistency in the results obtained using different features selection techniques in the literature has highlighted the importance of evaluating these techniques. Thus, in this study, six techniques of features selection were evaluated. Very-high-resolution LiDAR point clouds and orthophotos were acquired simultaneously in a rainforest area of Cameron Highlands, Malaysia by airborne laser scanning (LiDAR). A fuzzy-based segmentation parameter (FbSP optimizer) was used to optimize the segmentation parameters. Training samples were evaluated using a stratified random sampling method and set to 70% training samples. Two machine-learning algorithms, namely, Support Vector Machine (SVM) and Random Forest (RF), were used to evaluate the performance of each features selection algorithm. The overall accuracies of the SVM and RF models revealed that three of the six algorithms exhibited higher ranks in landslide detection. Results indicated that the classification accuracies of the RF classifier were higher than the SVM classifier using either all features or only the optimal features. The proposed techniques performed well in detecting the landslides in a rainforest area of Malaysia, and these techniques can be easily extended to similar regions.

Effects of Immobilization of the Ankle and Knee Joints on Postural Stability in Standing (바로 선 자세에서 발목과 무릎관절의 고정이 자세안정성에 미치는 영향)

  • Hwang, Su-Jin;Woo, Young-Keun;Jeon, Hye-Seon
    • Physical Therapy Korea
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    • v.15 no.1
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    • pp.30-37
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    • 2008
  • This study was designed to examine the effects of temporary immobilization of the ankle and knee joints on standing in healthy young adults with the use of a postural control mechanism. The subjects were twenty-four college students (12 males and 12 females, aged between 20 and 28). A Biodex balance system SD 950-302 and its software were used to measure indirect balance parameters in standing. Each subject underwent postural stability tests in 4-different joint conditions: free joints, ankle immobilization only, knee immobilization only, and ankle and knee immobilization. In addition, the postural stability test was conducted once with the subject's eyes open and once with the eyes closed conditions. For data analysis of the postural stability tests, the overall stability index, antero-posterior stability index, and medio-lateral stability index were recorded. The overall stability index (p=.000) and medial-lateral index (p=.003) were significantly greater different conditions with eyes closed in postural stability. Therefore, the eyes closed condition is expected to be used as an effective postural stability training for treatment planning in patients with unstable postures. In addition, training based on the dynamic multi-segment model can improve postural stability and is available to therapeutic programs, helping people with unstable balance to reduce their risk of falling.

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Deformation prediction by a feed forward artificial neural network during mouse embryo micromanipulation

  • Abbasi, Ali A.;Vossoughi, G.R.;Ahmadian, M.T.
    • Animal cells and systems
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    • v.16 no.2
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    • pp.121-126
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    • 2012
  • In this study, a neural network (NN) modeling approach has been used to predict the mechanical and geometrical behaviors of mouse embryo cells. Two NN models have been implemented. In the first NN model dimple depth (w), dimple radius (a) and radius of the semi-circular curved surface of the cell (R) were used as inputs of the model while indentation force (f) was considered as output. In the second NN model, indentation force (f), dimple radius (a) and radius of the semi-circular curved surface of the cell (R) were considered as inputs of the model and dimple depth was predicted as the output of the model. In addition, sensitivity analysis has been carried out to investigate the influence of the significance of input parameters on the mechanical behavior of mouse embryos. Experimental data deduced by Fl$\ddot{u}$ckiger (2004) were collected to obtain training and test data for the NN. The results of these investigations show that the correlation values of the test and training data sets are between 0.9988 and 1.0000, and are in good agreement with the experimental observations.

Effect of Pulmonary Function by Winter Intensive Training (baseball players) (동계훈련이 폐기능에 미치는 영향(야구선수를 중심으로))

  • Um, Ki-Mai;Yang, Yun-Kun;Park, Sung-Young
    • Journal of Korean Physical Therapy Science
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    • v.6 no.2
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    • pp.997-1005
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    • 1999
  • To evaluate the effect of winter intensive training on pulmonary function in high school baseball players, comparisons of various ventilatory parameters were made before and 3-3.5 months of winter intensive tranining. The subjects were 18 members of a high school baseball players with mean age and career of 6.3 and 7.3 years, respectively. The following were mainly observed by spirometry for the study ; respiratory rate, vital capacity(VC), maximum voluntary ventilation(MVV), forced vital capacity (FEV1%) and forced mid-expiratory flow (FEF25-75%). The result obtained are summarized as follow. 1) Resipratory rate, tidal volume, forced vital capacity, 1FEV%, FEF50% and FEF75% showed no significant difference between before and after. 2) MVV in after was significantly(p<0.001) increased to 166 L/min comparing with 136L/min in before. 3) 1FEV in after was significantly(p<0.05) increased to 4.46L comparing with 3.76L in before. 4) PEF in after was significantly(p<0.05) increased to 10.40 L/sec comparing with 9.18 L/sec in before.

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Effects of aerobic exercise on antioxidants in rat models with cardiomyopathy

  • Kim, Eun-Jung;Hwang, Sujin
    • Physical Therapy Rehabilitation Science
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    • v.4 no.1
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    • pp.17-21
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    • 2015
  • Objective: In this study, we aimed to test the hypothesis that aerobic exercise might exert its cardio-protective effect by preventing oxidative stress and improving cardiac function in rat models with doxorubicin-induced cardiomyopathy. Design: Randomized controlled trial. Methods: We randomly divided experimental rats into four groups: the normal group was used as a non-cardiomyopathy normal control (n=10); the control group included non-aerobic exercise after doxorubicin-induced cardiomyopathy (n=10); the experimental group I included aerobic exercise (3 m/min) after doxorubicin-induced cardiomyopathy (n=10); and experimental group II included aerobic exercise (8 m/min) after doxorubicin-induced cardiomyopathy. Rats in the treadmill training groups underwent treadmill training, which began at 2 weeks after the first intraperitoneal injection. At the end of the exercise period, we determined the heart weight change for each rat. Changes in the levels of oxidative stress enzymes (superoxide dismutase [SOD], thiobarbituric acid-reactive substances [TBARS], and catalase) in the cardiac tissue of rats from all four groups were examined at the end of the experiment. Results: Significant cardiac myocyte injury and increase in myocardial TBARS concomitant with a reduction in myocardial SOD and catalase were observed following cardiomyopathy (p<0.05). Significant cardiac tissue and increase in myocardial TBARS along with reduction in myocardial SOD and catalase were observed following cardiomyopathy (p<0.05). Oxidative parameters were significantly improved in the aerobic exercise groups compared with the control group. Conclusions: These findings indicate that aerobic exercise effectively prevents oxidative stress in rat models with cardiomyopathy.

Post Infection Physiobiochemical Alteration at Various Intensities of Leaf spot (Myrothecium roridum) in Mulberry

  • Kumar, P.M.Pratheesh;Qadri, S.M.H.;Pal, S.C.;Mishra, A.K.;Urs, S.Raje
    • International Journal of Industrial Entomology and Biomaterials
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    • v.7 no.2
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    • pp.175-180
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    • 2003
  • Changes in biochemical constituents and physiological alteration were studied in various intensities (1-5%, 6-15%, 16-30%, 31-50% and > 50%) of leaf spot (Myrothecium roridum) on mulberry leaves and compared with healthy leaves. Chlorophyll, total soluble sugar and total protein were decreased (P < 0.01), but total phenol increased due to pathogen infection. Changes in biochemical constituents showed significant correlation with intensity of disease. Chlorophyll ($r^2$= 0.92), and protein (($r^2$= 0.83) possessed negative while phenol (($r^2$= 0.61) possessed positive correlation. Photosynthetic rate, transpiration rate, stomatal conductance, moisture content (%) and physiological water use efficiency (pWUE) were decreased, but stomatal resistance increased in the infected leaves. Physiological parameters also possessed significant (P < 0.01) correlation with disease intensity. Photosynthetic rate (($r^2$= 0.96), transpiration rate ($r^2$=0.88), stomatal conductance (($r^2$= = 0.65), physiological water use efficiency (($r^2$= 0.88) and moisture content (r = 0.85) were negatively but stomatal resistance (($r^2$= 0.75) was positively correlated to disease intensities.