• Nuclear Engineering and Technology
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• 제52권10호
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• pp.2221-2229
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• 2020

After the Fukushima Daiichi nuclear power plant (NPP) accident, level 3 probabilistic safety assessment (PSA) has emerged as an important task in order to assess the risk level of the multi-unit NPPs in a single nuclear site. Accurate calculation of the radionuclide concentrations and exposure doses to the public is required if a nuclear site has multi-unit NPPs and large number of people live near NPPs. So, there has been a great need to develop a new method or procedure for the fast and accurate offsite consequence calculation for the multi-unit NPP accident analysis. Since the multi-unit level 3 PSA is being currently performed assuming that all the NPPs are located at the same position such as a center of mass (COM) or base NPP position, radionuclide concentrations or exposure doses near NPPs can be drastically distorted depending on the locations, multi-unit NPP alignment, and the wind direction. In order to overcome this disadvantage of the COM method, the idea of a new multiple location (ML) method was proposed and implemented into a new tool MURCC (multi-unit radiological consequence calculator). Furthermore, the MURCC code was further improved for the multi-unit level 3 PSA that has the arbitrary number of multi-unit NPPs. The objectives of this study are to (1) qualitatively and quantitatively compare COM and ML methods, and (2) demonstrate the strength and efficiency of the ML method. The strength of the ML method was demonstrated by the applications to the multi-unit long-term station blackout (LTSBO) accidents at the four-unit Vogtle NPPs. Thus, it is strongly recommended that this ML method be employed for the offsite consequence analysis of the multi-unit NPP accidents.

• 농업과학연구
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• 제45권4호
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• pp.583-590
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• 2018

Genus Typha L. (Typhaceae; Cattail in common) is one of the hydrophytic plants found in semi-aquatic regions. About nine to 18 species of the genus exist all over the world. In Korea, the most commonly found cattail species are T. laxmanni and T. angustifolia. The aim of this study was to prepare a cDNA library and sequences and analyze expressed sequence tags (ESTs) from these species, T. laxmanni and T. angustifolia. In the case of T. laxmanni, we observed that 715 out of 742 ESTs had high quality sequences, whereas the remaining 27 ESTs were low quality sequences. In this study, we identified 77 contigs, 393 unassembled clones and 65.7% singletons. Furthermore, in the case of T. angustifolia, we recorded 992 high quality EST sequences, and by excluding 28 low quality sequences from among them, we retrieved 120 contigs, 348 unassembled clones and 48.9% singletons. The basic local alignment search tool (BLAST) and Kyoto encyclopedia of genes and genomes (KEGG) database results enabled us to identify the functional categories, i.e., molecular function (16.5%), biological process (22.2%) and cellular components (61.3%). In addition, between these two species, the no hits and anonymous genes were 4.2% and 11.7% and 6.2% and 11.2% in T. laxmanni and T. angustifolia, respectively, based on the BLAST results. The study concluded that they have certain species-specific genes. Hence, the results of this study on these two species could be a valuable resource for further studies.

• Korean Chemical Engineering Research
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• 제59권4호
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• pp.639-643
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• 2021

본 연구에서는 3차원 다층 미세유체 디바이스를 제작하기 위한 접착제로서 불소화 에틸렌 프로필렌(fluorinated ethylene propylene, FEP) 나노입자를 연구하였다. FEP 분산 용액을 1500 rpm에서 30초 동안 단순 스핀 코팅하여 기판에 3 ㎛ 두께의 균일하게 분포된 FEP 나노 입자 층을 형성하였다. FEP 나노입자는 300 ℃에서 1시간 동안 열처리 후 소수성 박막으로 변형되었으며, FEP 나노입자를 이용하여 제작된 폴리이미드 필름 기반 미세유체 디바이스는 최대 2250 psi의 압력을 견디는 것을 확인하였다. 마지막으로 기존의 포토리소그래피로 제작하기 어려운 16개의 마이크로 반응기로 구성된 3차원 다층 미세유체 디바이스를 FEP가 코팅된 9개의 폴리이미드 필름을 간단한 1단계 정렬로 성공적으로 구현하였다. 개발된 3차원 다층 미세유체 디바이스는 화학 및 생물학의 다양한 응용을 위한 고속대량 스크리닝, 대량 생산, 병렬화 및 대규모 미세유체 통합과 같은 강력한 도구가 될 가능성이 있습니다.

• Fisheries and Aquatic Sciences
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• 제24권1호
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• pp.53-62
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• 2021

Gindai (Pristipomoides zonatus) is one of six snappers in a management complex called the Deep 7 of the Hawaiian Islands. Little is known about its life history and a preliminary analysis of otolith thin sections indicated the species may exhibit moderate growth with a lifespan approaching 40 years. Preliminary age estimates from the previous study were reinvestigated using the same otolith sections in an attempt to validate those ages with bomb radiocarbon (¹⁴C) dating. From the misalignment of birth years for the otolith ¹⁴C measurements with regional references - the post-peak bomb ¹⁴C decline period - it was concluded that previous ages were inflated from overcounting of the earliest growth zone structure in otolith sections. The oldest gindai was re-aged to 26 years once the age reading was adjusted for early overcounting, 13 years younger than the original estimate of 39 years for this fish. In general, the earliest otolith growth of gindai was massive and complicated by numerous subannual checks. The approach of lumping the early growth structures was supported by the alignment of ¹⁴C measurements from otolith core material (first year of growth). The result was greater consistency of calculated birthdates with the ¹⁴C decline reference, along with minor offsets that may indicate age estimation was imprecise by a few years for some individuals. The revised von Bertalanffy growth function applied to the validated age-at-length estimates revealed more rapid growth (k = 0.378 cf. 0.113) and a lifespan of approximately 30 years. The findings presented here are a case study of how the bomb ¹⁴C decline period can be used as a tool in the refinement of age reading protocols.

• Computers and Concrete
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• 제31권4호
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• pp.293-306
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• 2023

This study proposes and demonstrates a smart monitoring system that uses transmission lines embedded in a reinforced concrete structure to detect the presence of defects through changes in the electromagnetic waves generated and measured by a time-domain reflectometer. Laboratory experiments were first conducted to identify the presence of voids in steel-concrete composite columns. The results indicated that voids in the concrete caused a positive signal reflection, and the amplitude of this signal decreased as the water content of the soil in the void increased. Multiple voids resulted in a decrease in the amplitude of the signal reflected at each void, effectively identifying their presence despite amplitude reduction. Furthermore, the electromagnetic wave velocity increased when voids were present, decreased as the water content of the soil in the voids increased, and increased with the water-cement ratio and curing time. Field experiments were then conducted using bored piles with on-center (sound) and off-center (defective) steel-reinforcement cage alignments. The results indicated that the signal amplitude in the defective pile section, where the off-center cage was poorly covered with concrete, was greater than that in the pile sections where the cage was completely covered with concrete. The crosshole sonic logging results for the same defective bored pile failed to identify an off-center cage alignment defect. Therefore, this study demonstrates that electromagnetic waves can be a useful tool for monitoring the health and integrity of reinforced concrete structures.

• Fisheries and Aquatic Sciences
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• 제26권9호
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• pp.569-581
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• 2023

The morphology and genetic identification of Rasbora lateristriata and Rasbora argyrotaenia between cultivated and wild populations has never been reported. This study compares morphology and cytochrome c oxidase (COI) genes between farmed and wild stock Rasbora spp. in Java and Sumatra island, Indonesia. We analyzed the truss network measurement (TNM) characters of 80 fish using discriminant function analysis statistical tests. DNA was extracted from muscle tissue of 24 fish specimens, which was then followed by polymerase chain reaction, sequencing, phylogenetic analysis, fixation index analysis, and statistical analysis of haplotype networks. Basic Local Alignment Search Tool analysis validated the following species: R. lateristriata and R. argyrotaenia from farming (Jogjakarta); Rasbora agryotaenia (Purworejo), R. lateristriata (Purworejo and Malang), Rasbora dusonensis (Palembang), and Rasbora einthovenii (Riau) from natural resources. Based on TNM characters, Rasbora spp. were divided into four groups, referring to four distinct characters in the middle of the body. The phylogenetic tree is divided into five clades. The genetic distance between R. argyrotaenia (Jogjakarta) and R. lateristriata (Malang) populations (0.66) was significantly different (p < 0.05). R. lateristriata (Purworejo) has the highest nucleotide diversity (0.43). R. argyrotaenia from Jogjakarta and Purworejo shared the same haplotype. The pattern of gene flow among them results from the two populations' close geographic proximity and environmental effects. R. argyrotaenia had low genetic diversity, therefore, increasing heterozygosity in cultivated populations is necessary to avoid inbreeding. Otherwise, R. lateristriata (Purworejo) had a greater gene variety that could be used to develop breeding. In conclusion, the middle body parts are a distinguishing morphometric character of Rasbora spp., and the COI gene is more heterozygous in the wild population than in farmed fish, therefore, enrichment of genetic variation is required for sustainable Rasbora fish farming.

• 한국BIM학회 논문집
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• 제13권3호
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• pp.1-11
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• 2023

In order to use BIM as a tool for improving the productivity and quality of products in the construction industry, a BIM model must be created from the design stage first. Infrastructure structures such as bridges and tunnels are mainly created based on three-dimensional alignment in the generation of BIM models. Especially, generation of BIM models based on three-dimensional linearity has high task difficulty and algorithms for automating BIM modeling for railway infra structures have been suggested in previous studies. This study improved the BIM modeling automation algorithm of railway infrastructures and developed a system based on the algorithm so that it can be easily used by ordinary users. The system was built as an add-in system of Autodesk's Revit. As an improvement first, it is possible to arrange different libraries for each pattern, enabling various uses. In addition, it can be created models of several members with a single process and the system can automatically places structures that are added periodically, such as Rock Bolt and Fore Polling. Finally, 3D length information and volume for each pattern are automatically calculated for more accurate 3D-based volume calculation. This study contributes to increasing user accessibility by building a BIM modeling automation algorithm into a system. The system is expected to improve the efficiency of BIM modeling creation of linear-based infra structures, including railway infrastructure.

• Journal of Ecology and Environment
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• 제48권2호
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• pp.163-172
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• 2024

Background: Fruit bats are natural carriers of Nipah virus (NiV). The primary objective of this study is to identify potential reservoir species in a selected geographic regions. It is necessary to determine an accurate species identification of the associated reservoir bat species distributed in a specific region. Results: In this study, we collected 20 different bat specimens from the NiV-prone area of the Kushtia district. Among these, 14 were tissue samples (BT-1-14) and six were fecal samples (BF-1-6). We used the mitochondrial gene cytochrome b, one of the most abundant and frequently used genetic markers, for polymerase chain reaction amplification and sequencing. Out of the 20 samples, 12 tissue samples and 2 fecal samples were successfully amplified and sequenced. However, two tissue samples and four fecal samples yielded chimeric sequences, rendering them unsuitable for annotation. The sequences of the successfully amplified samples were compared to those deposited in the National Center for Biotechnology Information database using basic local alignment search tool to identify the bat specimen collected. The study identified six different bat species using both morphological and genetic data, which may carriers of the NiV. Conclusions: Our results suggest that additional research should be conducted to gather more information on fruit bats from different localities across the country. The study contributes to the establishment of appropriate measures for NiV carrying disease control and management.

• Fisheries and Aquatic Sciences
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• 제27권5호
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• pp.294-305
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• 2024

Tomini Bay in Gorontalo offers significant potential for amphidromous goby-fry, a group of fish found in at least five estuaries in the area, namely Bone-Bolango, Paguyaman, Bilungala, Tombulilato, and Taludaa Estuaries. Preliminary results were limited to only two locations in estuarine waters, namely the Bone-Bolango and Paguyaman rivers. Further exploration of goby-fry species in various locations within Tomini Bay is essential to enhance knowledge about the abundance and aid conservation efforts. Therefore, this study identified the goby-fry species and created their distribution map in the waters of Tomini Bay Gorontalo. The samples used were obtained from daily catches of fishermen in the five estuaries during the recruitment period from February to September 2022. These samples were categorized based on their morphological similarities and specific melanophore patterns. Distinct groups with different melanophore patterns from those previously reported were identified as newly recorded species, photographed, and described in terms of their morphology. Furthermore, two specimens from each newly recorded species underwent molecular identification using the cytochrome oxidase subunit 1 (COI) gene for DNA amplification and were analyzed through the Basic Local Alignment Search Tool (BLAST) method. The phylogenetic tree was constructed using the Maximum Likelihood Method. The results showed the existence of nongoby-fry species caught together with goby fry school. A total of 75,881 goby-fry and 1,687 nongoby-fry were successfully collected. Among the goby-fry species, 13 were identified, including three new records, namely Eleotris fusca (Forster, 1801), Sicyopterus microcephalus (Bleeker, 1855), and Sicyopus zosterophorus (Bleeker, 1856). This study also documented the existence of nongoby-fry species, namely Anguilla celebesensis (Kaup, 1856), Moringua microchir (Bleeker, 1853), and Microphis leiaspis (Bleeker, 1854). It significantly contributed to the understanding of fish biodiversity in Tomini Bay.

• 한국컴퓨터정보학회논문지
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• 제11권6호
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• pp.69-78
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• 2006

생물정보학 연구 있어서 아미노산이나 염기서열에 대한 유사성이나 상동성을 찾아내는 작업은 유전자의 기능에 대한 예측이나 단백질 구조를 예측하는 연구의 기반이 된다. 이러한 서열 데이터는 컴퓨터의 도입으로 매우 빠르게 증가하고 있다. 이러한 시점에서 서열에 대한 검색 속도는 매우 중요한 요소이기 때문에 대량의 서열정보를 다루기 위해서는 SMP(Sysmmetric Multi-Processors) 컴퓨터나 클러스터를 이용하고 있다. 본 논문에서는 서열 검색에 사용되는 BLAST(Basic Local Alignment Search Tool)의 속도향상을 위한 방법으로 클러스터 환경에서 병렬화 하는 nBLAST 알고리즘의 병렬화에 대해 제안한다. nBLAST는 기존의 BLAST 소스코드에 대한 수정 없이 병렬라이브러리인 MPI(Message Passing Interface)를 이용하여 질의를 분할하여 병렬화 하기 때문에 환경설정 등의 복잡한 과정을 거치지 않고 손쉽게 BLAST에 알고리즘에 대한 병렬화를 할 수 있다. 또한, 실험을 통하여 28대의 리눅스 클러스터에서 nBLAST를 수행하여 노드 수의 증가에 따른 성능 향상을 확인하였다.