• Journal of Species Research
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• v.5 no.3
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• pp.333-342
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• 2016

Based on the taxonomic survey to uncover the ciliate diversity in the eastern Kangwon-province, twenty-six species were identified from moss-covered soils and assigned to 5 classes, 9 orders, 12 families, and 15 genera. Of these, fifteen species are first records from Korea, and brief remarks with photographs were provided.

• Animal cells and systems
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• v.11 no.2
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• pp.235-246
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• 2007

Through taxonomic survey of specimens collected from the coasts of Korea from 1993 to 2006, Dimorphostylis echinata $Gam{\hat{o}}$, 1962 is new to Korean cumacean fauna. Especially, the adult male and female of D. echinata are described for the first time. Dimorphostylis sculpturensis Vassilenko and Tzareva, 1990 is proposed as a synonym of D. acroplicata Harada, 1960 in this research. Also, its female is redescribed for the first time in Korea.

• Proceedings of the Korean Society for Applied Microbiology Conference
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• 2000.04a
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• pp.142-149
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• 2000

Recent molecular and polyphasic taxonomic approaches toward bacterial systematics have played a significant role in revolutionizing our insight in the taxonomy of bacterial organisms. This advance has also contributed greatly to delineation of new taxa from bacterial organisms isolated from a variety of natural sources of Korea. Recently, many bacterial organisms have isolated from soil, seawater, foods, wastewaters and humans of Korea and have been subjected to polyphasic taxonomic study. From the results of this study, some isolates have been found to be members of new genera and new species.

• Entomological Research
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• v.48 no.6
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• pp.499-504
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• 2018

A taxonomic review of the genus Mocyta Mulsant & Rey in Korea is presented. The genus is represented in Korea by three species including Mocyta jani Lee & Ahn, sp. nov. and M. vivida (Sharp), comb. nov. A key to Korean species, descriptions, habitus photographs and illustrations of the diagnostic characters are provided.

• Journal of Species Research
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• v.13 no.2
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• pp.131-135
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• 2024

Two unrecorded species, Brachynervus beijingensis and B. confusus are described from South Korea for the first time. A taxonomic study of the South Korean Brachynervus was initiated by Uchida (1955). Until now only one species, B. tsunekii, has been recorded from South Korea. In the study, we provide the diagnoses and photos of two unrecorded species of Brachynervus.

• Mycobiology
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• v.40 no.3
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• pp.202-204
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• 2012

Heterodermia flabellata (F$\acute{e}$e) D. D. Awasthi was found as a new lichen record in Jeju Island of South Korea in 2012. A detailed taxonomic description and comments are provided for the taxa. An updated key for all recorded species of Heterodermia from South Korea is given.

• International journal of advanced smart convergence
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• v.8 no.3
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• pp.115-122
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• 2019

Recent and ongoing discoveries of mycoviruses with new properties demand the development of an appropriate research infrastructure to analyze their evolution and classification. In particular, the discovery of negative-sense single-stranded mycoviruses is worth noting in genome types in which double-stranded RNA virus and positive-sense single-stranded RNA virus were predominant. In addition, some genomic properties of mycoviruses are more interesting because they have been reported to have similarities with the pathogenic virus family that infects humans and animals. Genetic information on mycoviruses continues to accumulate in public repositories; however, these databases have some difficulty reflecting the latest taxonomic information and obtaining specialized data for mycoviruses. Therefore, in this study, we developed a bioinformatics-based pipeline to efficiently utilize this genetic information. We also designed a schema for data processing and database construction and an algorithm to keep taxonomic information of mycoviruses up to date. The pipeline and database (termed 'mycoVDB') presented in this study are expected to serve as useful foundations for improving the accuracy and efficiency of future research on mycoviruses.

• Mycobiology
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• v.50 no.1
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• pp.55-65
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• 2022

Lichen is a symbiotic mutualism of mycobiont and photobiont that harbors diverse organisms including endolichenic fungi (ELF). Despite the taxonomic and ecological significance of ELF, no comparative investigation of an ELF community involving isolation of a pure culture and high-throughput sequencing has been conducted. Thus, we analyzed the ELF community in Parmotrema tinctorum by culture and metabarcoding. Alpha diversity of the ELF community was notably greater in metabarcoding than in culture-based analysis. Taxonomic proportions of the ELF community estimated by metabarcoding and by culture analyses showed remarkable differences: Sordariomycetes was the most dominant fungal class in culture-based analysis, while Dothideomycetes was the most abundant in metabarcoding analysis. Thirty-seven operational taxonomic units (OTUs) were commonly observed by culture-and metabarcoding-based analyses but relative abundances differed: most of common OTUs were underrepresented in metabarcoding. The ELF community differed in lichen segments and thalli in metabarcoding analysis. Dissimilarity of ELF community intra lichen thallus increased with thallus segment distance; inter-thallus ELF community dissimilarity was significantly greater than intra-thallus ELF community dissimilarity. Finally, we tested how many fungal sequence reads would be needed to ELF diversity with relationship assays between numbers of lichen segments and saturation patterns of OTU richness and sample coverage. At least 6000 sequence reads per lichen thallus were sufficient for prediction of overall ELF community diversity and 50,000 reads per thallus were enough to observe rare taxa of ELF.

• ALGAE
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• v.35 no.3
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• pp.293-301
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• 2020

The applications of DNA barcoding have a wide range of uses, such as in taxonomic studies to help elucidate cryptic species and phylogenetic relationships and analyzing environmental samples for biodiversity monitoring and conservation assessments of species. After obtaining the DNA barcode sequences, sequence similarity-based homology analysis is commonly used. This means that the obtained barcode sequences are compared to the DNA barcode reference databases. This bioinformatic analysis necessarily implies that the overall quantity and quality of the reference databases must be stringently monitored to not have an adverse impact on the accuracy of species identification. With the development of next-generation sequencing techniques, a noticeably large number of DNA barcode sequences have been produced and are stored in online databases, but their degree of validity, accuracy, and reliability have not been extensively investigated. In this study, we investigated the extent to which the amount and types of erroneous barcode sequences were deposited in publicly accessible databases. Over 4.1 million sequences were investigated in three largescale DNA barcode databases (NCBI GenBank, Barcode of Life Data System [BOLD], and Protist Ribosomal Reference database [PR2]) for four major DNA barcodes (cytochrome c oxidase subunit 1 [COI], internal transcribed spacer [ITS], ribulose bisphosphate carboxylase large chain [rbcL], and 18S ribosomal RNA [18S rRNA]); approximately 2% of erroneous barcode sequences were found and their taxonomic distributions were uneven. Consequently, our present findings provide compelling evidence of data quality problems along with insufficient and unreliable annotation of taxonomic data in DNA barcode databases. Therefore, we suggest that if ambiguous taxa are presented during barcoding analysis, further validation with other DNA barcode loci or morphological characters should be mandated.

• Korean Journal of Ichthyology
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• v.27 no.3
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• pp.165-182
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• 2015

The snailfishes (Scorpaenoidei: Liparidae) is a large group requiring taxonomic reviews because of a potential taxonomic confusion due to its great similarity in external morphology between species and a variation of its body color with size. Molecular phylogeny and taxonomic review were conducted for 10 species in 3 genera reported around the Korean waters, which facilitate understanding interrelationship within its family, and further management of fisheries resources. Molecular phylogeny using mitochondrial COI (mtCOI) and nuclear RAG2 (nRAG2) sequences indicates that the reciprocal monophyly of the three genera (Careproctus, Crystallichthys, and Liparis) were supported except Crystallichthys matsushimae, being closely related to Careproctus notosaikaiensis in only mtDNA COI topology. Liparis ingens Gilbert and Burke (1912) was reported as a distinct species differing from L. ochotensis. However, in the present study, comparing L. ingens from Korea with L. ochotensis from Japan and Russia, the two species were well corresponded in their morphology and molecule, therefore, we suggest L. ingens to be treated as a junior synonym of L. ochotensis.