• Fisheries and Aquatic Sciences
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• 제21권3호
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• pp.8.1-8.6
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• 2018

Desmarestia japonica (Phaeophyceae, Desmarestiales) was recently established from the Japanese ligulate Desmarestia and is morphologically similar to D. ligulata. This species has been reported only from Japan. However, the taxonomic reports based on additional regional distributions are needed to clarify this taxonomic entity and its species boundaries. Because Desmarestia species have restricted distributions in Korea, we reexamined herbarium specimens of D. ligulata deposited at the National Institute of Biological Resources (South Korea). To improve the amplification efficiency of the polymerase chain reaction and avoid contamination by the DNA of other organisms, we developed taxon-specific molecular markers suitable for DNA barcoding of Desmarestia species. Nuclear ribosomal small subunit RNA (18S rDNA) and mitochondrial cytochrome c oxidase 1 (cox1) regions were selected as target DNA. As a result, both were successfully isolated from herbarium specimens of D. japonica acquired over 10 years. These molecular markers provide useful genetic information for herbarium specimens for which conventional molecular analysis is challenging.

• 한국환경생태학회지
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• 제29권1호
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• pp.69-80
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• 2015

Studies on Trapa of Korean, Japanese, and Chinese origins have been generally limited to currently living Trapa, thereby demonstrating the lack of phylogenetic approaches. In the present study, we conducted a numerical taxonomic study on 34 Korean origin Trapa species newly discovered in peat deposits. By using the numerical taxonomy as well as geological data, we created an appearance map based on the periods and taxonomic groups of the Korean Trapa. Further, by using this appearance map, we reviewed the limitations that exist in the taxa and simultaneously discussed the adaptational environment of Trapa in each period. Although other studies have discussed new variants of Trapa worldwide, including T. litwinowii V. vassil. var. chihuensis S.F.Guan & Q.Lang of China (Guan and Lang, 1987), the present study is significant because it provides data on the origin of Korean Trapa species. The availability of such data is essential in determining the adaptational environment of the presently living Trapa. To our knowledge, this is the first report of approximately 10 newly discovered and other presently living species of Trapa. Further, the appearance map in the present study allows the use of the 10 newly discovered species and variants of 34 Trapa species indigenous to South Korea for over 1000 years, for a comparison with the currently living Trapa species. Thus, the present study results could serve as important basic data to understand the adaptational environment of the genus Trapa. from the past to the present in Korea.

• Mycobiology
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• 제43권3호
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• pp.225-230
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• 2015

The polypore genus Abundisporus Ryvarden is characterized by resupinate to pileate fruitbodies with a purplish brown hymenophore, slightly thick-walled, pale yellowish and non-dextrinoid basidiospores, and causing white rot. A purple color hymenophore, an easily observable and striking character, was considered the main distinctive feature at the generic level within polypores. However, due to highly similar basidiocarp features, species identification within these purple polypores is particularly difficult. Three species of purple colored polypores have been reported in Korea (Abundisporus fuscopurpureus, A. pubertatis, and Fomitopsis rosea). Based on morphological re-examination, ecological information, and sequence analysis of the internal transcribed spacer, we showed that previous classification was incorrect and there is only one species (A. pubertatis) in Korea. We provide a detailed description of A. pubertatis in Korea, as well as a taxonomic key to distinguish wood rot fungi with a purple hymenophore.

• Animal cells and systems
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• 제15권1호
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• pp.45-51
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• 2011

To clarify the taxonomic status of five specimens of Albula collected from Korea and Taiwan (Albula sp.), genetic differences among them and other congeneric species were investigated based on mitochondrial DNA cytochrome b sequences. All five specimens of Albula sp. showed identical haplotypes and strongly supported a monophyletic group on phylogenetic analysis. The genetic differences between Albula sp. and ten other species of Albula ranged from 0.100 to 0.164. These values were almost equal to or exceeded the interspecific differences among the latter ten species (0.038-0.206). Morphological comparisons of Albula sp. and another four Indo-Pacific species, A. argentea, A. glossodonta, A. oligolepis and A. virgata, are also presented. Albula sp. could be distinguished from the latter four species in their numbers of pored lateral-line scales, anal fin rays and vertebrae, as well as in several proportional measurements.

• 식물분류학회지
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• 제38권3호
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• pp.233-250
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• 2008

한국 특산종인 노각나무(Stewartia koreana Nakai ex Rehder)의 분류학적 위치를 재검토하기 위해, 노각나무와 근연 분류군의 외부형태와 ITS 염기서열을 조사하였다. 노각나무는 일본에 분포하는 S. pseudocamellia와 외부 형태적으로 매우 유사하였으나, 노각나무는 잎이 대형이고 소화경의 길이가 2.5 cm 이상인 점에서 S. pseudocamellia와 구별되었다. ITS 염기서열을 분석한 결과 노각나무는 S. pseudocamellia와 별개의 분계조를 형성하였다. 따라서 외부형태 및 ITS 염기서열 결과는 노각나무가 S. pseudocamellia와 다른 별개의 한국 특산종임을 지지해 주었다.

• Mycobiology
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• 제49권4호
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• pp.308-345
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• 2021

Lactifluus (Pers.) Roussel is an ectomycorrhizal genus that was recently recognized to be distinct from the genus Lactarius. To date, 226 Lactifluus species have been reported worldwide. Misidentification of Lactifluus species is common because of intraspecific morphological variation, cryptic diversity, and the limited number of taxonomic keys available. Molecular data are indispensable for species delimitation; a multilocus phylogenetic analysis showed that most Asian Lactifluus species are not conspecific with morphologically similar species present on other continents. In particular, Korea has misused European and North American Lactifluus names. In this study, we evaluated the taxonomy of Lactifluus in Korea using both morphological and multilocus molecular (ITS, nrLSU, rpb1, and rpb2) data. We examined 199 Lactifluus specimens collected between 1980 and 2016, and a total of 24 species across the four Lactifluus subgenera were identified. All Korean species are distinct and clearly separated from European and North American species. Five taxa corresponded to previously described species from Asia and the remaining 19 taxa are confirmed as new species. Herein, we provide keys to the Korean Lactifluus species within their subgenera, molecular phylogenies, a summary of diversity, and detailed description of the new species.

• Journal of Microbiology and Biotechnology
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• 제31권11호
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• pp.1490-1500
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• 2021

Various microorganisms reside in the human vagina; the vaginal microbiome is closely linked to both vaginal and general health, and for this reason, microbiome studies of the vagina are an area of research. In this study, we analyzed the vaginal microbiome of women before and after menopause to further increase our understanding of the vaginal microbiome and its contribution to general health. We did a 16s rRNA gene-based metagenomic analysis on the vaginal fluids of 11 premenopausal and 19 postmenopausal women in Korea. We confirmed that the taxonomic composition was significantly different between the two groups. In postmenopausal women, species richness was significantly decreased, but species diversity was significantly increased. In particular, among the taxonomic components corresponding to all taxon ranks of the vaginal microbiome, a reduction in Lactobacillus taxa after menopause contributed the most to the difference between the two groups. In addition, we confirmed through metabolic analysis that the lactic-acid concentration was also decreased in the vaginal fluid of women after menopause. Our findings on the correlation between menopause and the microbiome could help diagnose menopause and enhance the prevention and treatment diseases related to menopause.

• Journal of Species Research
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• 제11권4호
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• pp.335-342
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• 2022

Through the 'Discovery of Korean Indigenous Species' project hosted by the National Institute of Biological Resources (NIBR), new or unrecorded species of various protozoans inhabiting the Korean Peninsula have been discovered. Samples were collected from marine, freshwater, and soil habitats in South Korea and all species were identified and reviewed by experts working on the respective taxonomic group. This study includes 17 unrecorded Korean protozoan species discovered through this project, which belong to four phyla: Amoebozoa Lühe, 1913, Cercozoa Cavalier-Smith, 1998, Euglenozoa Cavalier-Smith, 1981, and Ciliophora Doflein, 1901. Among them, three families (Rhogostomidae Dumack et al., 2017, Parauronematidae Small and Lynn, 1985, and Cyclidiidae Ehrenberg, 1838) and three genera (Rhogostoma Belar, 1921, Parauronema Thompson, 1967, and Cyclidium Müller, 1773) were reported for the first time in Korea. Unlike the previous paper of 2017, this study provides a comprehensive taxonomic account of each species (e.g., species name, collection site, synonyms, specimen vouchers, diagnoses, and figures). Additionally, all the species were assigned Korean names.

• Journal of Korean Dental Science
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• 제16권1호
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• pp.35-46
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• 2023

Purpose: Culture-based methods for microbiological diagnosis and antibiotic susceptibility tests have limitations in the management of orofacial infections. We aimed to profile pus microbiota and identify antibiotic resistance genes (ARGs) using a culture-independent approach. Materials and Methods: Genomic DNA samples extracted from the pus specimens of two patients with orofacial abscesses were subjected to shotgun sequencing on the NovaSeq system. Taxonomic profiling and prediction of ARGs were performed directly from the metagenomic raw reads. Result: Taxonomic profiling revealed obligate anaerobic polymicrobial communities associated with infections of odontogenic origins: the microbial community of Patient 1 consisted of one predominant species (Prevotella oris 74.6%) with 27 minor species, while the sample from Patient 2 contained 3 abundant species (Porphyromonas endodontalis 33.0%; P. oris 31.6%; and Prevotella koreensis 13.4%) with five minor species. A total of 150 and 136 putative ARGs were predicted in the metagenome of each pus sample. The coverage of most predicted ARGs was less than 10%, and only the CfxA2 gene identified in Patient 1 was covered 100%. ARG analysis of the seven assembled genome/metagenome datasets of P. oris revealed that strain C735 carried the CfxA2 gene. Conclusion: A metagenomics-based approach is useful to profile predominantly anaerobic polymicrobial communities but needs further verification for reliable ARG detection.

• 한국어류학회지
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• 제36권1호
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• pp.84-93
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• 2024

우리나라 해역에 서식하는 상어류는 지금까지 9목 21과 32속 47종으로 알려져 있다. 따라서 최근 연구와 우리나라 연근해 상어 출현 기록들을 검토하여 정리하였다. 그 결과, 불범상어과의 상안와골의 마루가 없는 점을 기준으로 불범상어를 기존의 두툽상어과에서 불범상어과로 분리하였다. 이에 따라 불범상어과, 기름상어속, 기름상어와 큰눈환도상어 2종이 추가되어 우리나라 해역의 상어를 총 9목 22과 33속 49종으로 정리하였다. 이들의 종목록과 검색표, 학명변천사를 기록하였으며, Pentanchidae의 국명 신칭은 '불범상어과'로 제안한다.