• Title/Summary/Keyword: systematics : Korea

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Intercellular transport across pit-connections in the filamentous red alga Griffithsia monilis

  • Kim, Gwang Hoon;Nagasato, Chikako;Kwak, Minseok;Lee, Ji Woong;Hong, Chan Young;Klochkova, Tatyana A.;Motomura, Taizo
    • ALGAE
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    • v.37 no.1
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    • pp.75-84
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    • 2022
  • Intercellular nutrient and signal transduction are essential to sustaining multicellular organisms and maximizing the benefits of multicellularity. It has long been believed that red algal intercellular transport of macromolecules is prevented by the protein-rich pit plug within pit-connections, the only physical connection between cells. Fluorescein isothiocyanate-dextran and recombinant green fluorescence protein (rGFP) of various molecular sizes were injected into vegetative cells of Griffithsia monilis using a micromanipulator, and intercellular transport of the fluorescent probes was examined. Pit-connections were found to provide intercellular transport of tracers at rates comparable to plasmodesmata in other organisms. The time necessary for the transport to an adjacent cell was dependent on the molecular size and the direction of the transport. Fluorescent dextran of 3 kDa was transported to adjacent cells in 1-2 h after injection and migrated to all cells of the filament within 24 h, but fluorescent dextran of 10-20 kDa took 24 h to transfer to neighboring cells. The migration occurred faster towards adjacent reproductive cells and to apical cells than basally. Fluorescent tracers above 40 kDa and rGFP was not transported to neighboring cells, but accumulated near the pit plug. Our results suggest that pit-connections are conduit for macromolecules between neighboring cells and that these size-specific conduits allow intercellular communication between the vegetative cells of red algae.

Exon Capture - Principle and Applications to Phylogenomics and Population Genomics of Fishes (엑손 포획 - 원리와 어류의 계통유전체학 및 집단유전체학으로의 응용)

  • Li, Chenhong
    • Korean Journal of Ichthyology
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    • v.33 no.4
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    • pp.205-216
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    • 2021
  • Phylogenetic reconstruction based on one locus or a few loci can be misleading due to gene-tree/species-tree discordance. Species delimitation and intraspecific studies also often suffered from low resolution because of insufficient statistic power when few loci were used. Exon capture method is one of the most efficient way to collect genome-scale data, which can significantly augment studies that aimed to investigate patterns and histories of organisms at both intraspecific and high level. Here, I showed the advancement of shifting from single-gene method to genomic approach and the benefit of applying exon capture method comparing to alternative genomic techniques. Then, I explained the principle of exon capture method as well as providing detailed recommendations for applying this method. Finally, I demonstrated exon capture method using two applications and discussed future perspectives of this technology.

A phylogenetic analysis of the Korean endemic species Paraphlomis koreana (Lamiaceae) inferred from nuclear and plastid DNA sequences

  • Eun-Kyeong HAN;Jung-Hyun KIM;Jin-Seok KIM;Chang Woo HYUN;Dong Chan SON;Gyu Young CHUNG;Amarsanaa GANTSETSEG;Jung-Hyun LEE;In-Su CHOI
    • Korean Journal of Plant Taxonomy
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    • v.53 no.2
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    • pp.157-165
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    • 2023
  • Paraphlomis koreana (Lamiaceae) was newly named and added to Korean flora in 2014. Paraphlomis belongs to the tribe Paraphlomideae, along with Ajugoides and Matsumurella. However, a recent study has suggested that P. koreana is morphologically similar to Matsumurella chinensis, making them difficult to distinguish from each other. Therefore, we aimed to examine the phylogenetic placement of P. koreana within the tribe and compare its genetic relationship with M. chinensis. We sequenced an additional complete plastid genome for an individual of P. koreana and generated sequences of nuclear ribosomal (nr) DNA regions of internal and external transcribed spacers (ITS and ETS) for two individuals of P. koreana. Maximum likelihood analyses based on two nrDNA regions (ITS and ETS) and four plastid DNA markers (rpl16 intron, rpl32-trnL, rps16 intron, and trnL-F) covering 13 Paraphlomis species and M. chinensis were conducted. Phylogenetic analyses concordantly supported that P. koreana forms a monophyletic group with M. chinensis. Moreover, our study revealed that P. koreana includes nrDNA sequences of M. chinensis as minor intra-individual variants, suggesting that the genetic divergence between the two taxa is incomplete and may represent intraspecific variation rather than distinct species. In conclusion, our findings suggest that the independent species status of P. koreana within Paraphlomis should be reconsidered.

Franchising for Global Distribution: A Systematic Review

  • Nurul Ashykin ABD AZIZ;Mohamad Rohieszan RAMDAN;Khairunnisa ABDUL AZIZ;Hasif Rafidee HASBOLLAH;Noreen Noor ABD AZIZ;Nik Syuhailah NIK HUSSIN;Md Zaki MUHAMAD HASAN
    • Journal of Distribution Science
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    • v.21 no.10
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    • pp.39-49
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    • 2023
  • Purpose: The purpose of this study is to explore areas that have been studied extensively in previous studies related to franchising as a platform for global distribution. Furthermore, franchising is a strategic distribution method that gives entrepreneurs the opportunity to replicate an established business model. In addition, franchisees benefit from the use of established branding and receive support from the franchisor. Research design, data, and methodology: This study used the Preferred Reporting Items Systematics Review and Meta-Analyses (PRISMA) method to analyse data from 2003 to 2023 in the Web of Science and Scopus databases. Results: A total of 79 articles were identified and analysed to see trends and related themes such as product distribution, business distribution, business strategy, emerging market, and franchising relationship. Also, publication trends by year related to franchises are also presented. Conclusions: Overall, the research trend related to franchising as a global distribution is well seen, and every year, many researchers begin to explore the topic of franchising as a method of distribution that can be explored from various aspects either quantitatively or qualitatively. Lastly, limitations and recommendations are made to provide guidance for future studies related to the topic broadly and deeply in enriching the findings.

Morphometric Analyses of the Three Subspecies of Striped Field Mouse, Apodemus agrarius Pallas (Mammalia: Rodentia) from Far Eastern Asia: Taxonomic Status of North Korean Striped Field Mice (극동아시아에 서식하고 있는 등줄쥐 Apodemus agrarius Pallas (포유강 :설치 목) 3아종의 형태 형질의 분석: 북한산 등줄쥐의 분류학적 위치)

  • Koh, Hung-Sun;G. Csorba;M.P. Tiunov;G. Tikhonova
    • Animal Systematics, Evolution and Diversity
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    • v.14 no.4
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    • pp.327-334
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    • 1998
  • Four external and 27 cranial characters of three subspecies of striped field mice (Apodemus agrarius) from 15 regions in far eastern Asia(South Korea, North Korea, northeastern China, and far eastern Russia) were analyzed by multivariate methods in order to determine taxonomic status of striped field mice from North Korea. Three subgroups were recognized: a large-size form from two localities in South Korea(Cheju Island, Wando Island): a medium-size form from eight localities in South Korea and North Korea(Jindo Island, Kunsan, Mt. Chirisan, Cheongju, Mt. Weoleksan, Mt. taebaksan; Haeju, Sineuiju); a small-size form from five localities in North Korea, northeastern China, and far eastern Russia (Mt. Kumkangsan, Mt. Myohyangsan; Jirin, Yichun; Vladivostok). It is confirmed that the large-size form, the medium-size form, and the small-size form are subspecies chejuensis, coreae, and manchuricus, respectively, as noted by Koh et al.(1997). It is revealed that striped field mice(the medium-size form) from western region of North Korea (Haeju, Sineuiju) is classified into A. agrarius coreae, as noted by Thomas(1908), but striped field mice(the small-size form) from eastern region of North Korea(Mt. Kumkangsan, Mt. Myohyangsan) is A. agrarius manchuricus.

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First Record of the Smoothtail Mobula, Mobula thurstoni (Myliobatiformes: Myliobatidae) in Southern Korea (한국 여수에서 채집된 매가오리과 (Myliobatidae) 어류 첫기록종, Mobula thurstoni)

  • Myoung, Se Hun;Song, Young Sun;Kang, Chung-Bae;Choi, Hong-In;Kim, Jong-Gwan;Yoon, Moongeun;Im, Jaebok;Han, Dong-Jin
    • Korean Journal of Ichthyology
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    • v.33 no.2
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    • pp.148-154
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    • 2021
  • Two specimens (1770~1850 mm disc width) of Mobula thurstoni, belonging to the family Myliobatidae, order Myliobatiformes, were first collected from the central coast of the Southern Sea of Korea in September 2018. This species is characterized by an anterior margin of disc with double curvature, a white-tipped dorsal fin, and the absence of a caudal spine. This species is morphologically similar to Mobula kuhlii, but has an anterior margin of pectoral fins with a double curvature and the dorsal coloration is bluish black rather than white. In addition, M. thurstoni was well distinguished from M. kuhlii as determined by mitochondrial DNA 16S rRNA sequences with genetic distances ranging from 0.030 to 0.069. The Korean name 'Mae-kkeun-kko-li-jwi-ga-o-li' is proposed for the species M. thurstoni.

Measures for a closer-to-real estimate of dietary exposure to total mercury and lead in total diet study for Koreans

  • Koh, Eunmi;Shin, Hyehyung;Yon, Miyong;Nam, Ji Woon;Lee, Yoonna;Kim, Dohee;Lee, Jeeyeon;Kim, Meehye;Park, Sung-Kug;Choi, Hoon;Kim, Cho-Il
    • Nutrition Research and Practice
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    • v.6 no.5
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    • pp.436-443
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    • 2012
  • Previous Korean total diet studies (KTDSs) have estimated dietary exposure to toxic chemicals based on 110-120 representative foods selected from over 500 foods appeared in the Korea National Health & Nutrition Examination Surveys (KNHANES), which would result in a possible underestimation. In order to find measures for a closer-to-real estimate of dietary exposure to heavy metals, this study examined the feasibility of mapping foods to the representative foods in the KTDS by comparing estimates. In mapping, those foods not analyzed in the 2009 KTDS (443 out of 559 foods appeared in the 2007 KNHANES) were mapped to the 114 representative foods used in the 2009 KTDS based on the closeness in regards to biological systematics and morphological similarity. Dietary exposures to total mercury and lead were re-estimated using the content of total mercury and lead in 114 foods analyzed in the 2009 KTDS, food intake, and individual's own body weight for respondents in the 2007 KNHANES instead of mean body weight of Koreans used in the 2009 KTDS. The re-estimates of exposure with mapping were approximately 50% higher than the original estimates reported in the 2009 KTDS. In addition, mapping enabled the comparison of percentile distribution of the exposure among populations of different age groups. In conclusion, estimates via mapping resulted in a more comprehensive estimation of dietary exposure to heavy metals present in foods that Koreans consume.

Practical Approach for Quantitative and Qualitative Analyses of Marine Ciliate Plankton (해양 섬모충플랑크톤 정량과 정성분석의 현실적 접근)

  • KIM, YOUNG OK;KIM, SUN YOUNG;CHOI, JUNGMIN;KIM, JAESEONG
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.26 no.3
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    • pp.248-262
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    • 2021
  • Marine planktonic ciliates include two major groups, loricated tintinnids and naked oligotrichs. The study of marine ciliate plankton in Korea began with taxonomic efforts on tintinnids based on the morphology of lorica, a vase-shaped shell. Despite polymorphism in the lorica, it is utilized as a key characteristic in identification of tintinnid species. However, oligotrichs have been studied only recently in Korea due to challenges associated with the observation of ciliary arrangements and the technical development for cell staining. Species diversity and phylogenetic classification of the ciliates have been informed by recent advances in morphological and molecular analyses. Illustrations of the planktonic ciliate in Korea have been published on the basis of taxonomic data of tintinnids and oligotrichs. Planktonic ciliates acting as the major consumers of pico- and nanoplankton as well as the prey of mesozooplankton, has been monitored by spatial and temporal investigations in Korean coastal waters. A practical approach addressing the limitations and potential of marine ciliate studies in Korea is proposed here to improve the data quality of planktonic ciliates, providing an enhanced basis for quality control of ciliate monitoring.

Geochemical Application for Clarifying the Source Material of the Earthenware: A Preliminary Study for Archaeological Application of Geochemical Tool (도토기의 태토(기원물질)산지를 추적하기 위한 지구화학적 응용연구: 지구화학연구기법의 고고학적 응용을 위한 기초연구)

  • Lee, Seung-Gu;Lee, Kil-Yong;Yoon, Yoon-Yeol;Yang, Myeong-Kwon;Kim, Kyu-Ho;Lee, Sung-Joo;Ahn, Sang-Doo
    • The Journal of the Petrological Society of Korea
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    • v.19 no.3
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    • pp.181-197
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    • 2010
  • This study is for finding a geoscientific factor for clarifying the source soil of the ancient earthenware finding. The used samples were the earthenware, soil and rocks, which were collected at the Gyeongju, Gyeongsan and Haman area. The chemical and mineralogical study for the samples were carried out for understanding the change of mineralogical and chemical composition among them. The mineralogical compositions of the earthenware are different from those of the soils from the surrounding area, which suggests that the mineralogical approach for clarifying the source soil of the earthenware should be difficult. Major element compositions of the earthenware also are different from those of the surrounding soils, which suggests that the comparison of the chemical composition using the major elements might be difficult for deducing the source soil of the earthenware. However, PAAS-normalized rare earth element (REE) patterns and Nd model ages among the rock, soils and earthenware from the same sampling sites show similar characteristics one another compared to those of the major element compositions. Nd-Sr isotopic systematics among the earthenware, soils and rocks also show a close relationship. Our results suggest that REE and Nd-Sr isotope geochemistry might be more useful than the other geochemical technique in clarifying the source soils of the ancient earthenware.

COI-Based Genetic Structure of an Exotic Snapping Turtle Chelydra serpentina Imported to South Korea

  • Baek, Su Youn;Shin, ChoRong;Kim, Kyung Min;Choi, Eun-Hwa;Hwang, Jihye;Jun, Jumin;Park, Taeseo;Kil, Hyun Jong;Suk, Ho Young;Min, Mi-Sook;Park, Yoonseong;Lee, YoungSup;Hwang, Ui Wook
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.4
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    • pp.354-362
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    • 2020
  • A common snapping turtle Chelydra serpentina inhabiting North America is internationally protected as an endangered species. It is known that the individuals of common snapping turtles were imported to South Korea as pets, and after being abandoned, some inhabit the natural ecosystem of South Korea like wild animals. No genetic survey has yet been performed for the common snapping turtles imported to South Korea. Hereby, cytochrome c oxidase subunit I (COI) information, which is 594 bp long, was determined for a total of 16 C. serpentina individuals, of which one was found in nature, twelve legally imported and their descendants, and the other three were provided from the Kansas Herpetological Society, USA. The obtained data were combined with thirteen COI sequences of C. serpentina retrieved from NCBI GenBank for the subsequent population genetic analyses. The results showed that there exist five haplotypes with high sequence similarity (only three parsimoniously informative sites). In the TCS and phylogenetic analyses, all the examined C. serpentina samples coincidently formed a strong monoclade with those collected mostly from Kansas State, USA, indicating that the imported ones to South Korea are from the central North America. In addition, there found the amino acid changes and the high degree of nucleotide sequence differences between C. serpentina and C. rossignoni with some important morphological characters. It is expected that the present results could provide an important framework for systematic management and control of exotic snapping turtles imported and released to nature of South Korea.