• Animal Systematics, Evolution and Diversity
• /
• 제16권2호
• /
• pp.203-211
• /
• 2000

한국에서 양식되어지고 있는 한국산 굴류 4종, 굴(Crassostrea gigas Thunberg), 바위굴(C. nippona Seki), 강굴(C. ariakensis Fujita et Wakiya), 토굴(Ostrea denselamellosa Lischke)의 유전적 근연관계를 조사하고자 미토콘드리아 DNA의 16S rDNA와 cytochrome c oxidase I (COI) 유전자 일부분의 염기서열을 분석하였다. 16S rDNA의 319 bp와 COI유전자의 710 bp를 PCR 증폭하여 염기서열을 결정하였으며, 염기서열과 아미노산서열을 자료로 하여 UPGMA와 neighbor-joining 방법으로 계통수를 작성하고, 종간 유연관계를 확인하였다. Crassostrea 속과 Ostrea 속간 비교에서는 뚜렷한 유전적 분화를 나타내었으며 계통분석 결과, neighbor-joining 방법에 의한 COI의 아미노산 서열분석에서는 굴과 강굴이 자매군을 형성하는 양상을 보였으나 두 유전자의 염기서열과 A+T 비율 비교에서는 굴과 바위굴이 자매군을 형성하는 것으로 나타났다.

• 한국자원식물학회지
• /
• 제11권3호
• /
• pp.335-344
• /
• 1998

Percicarp anatomy of Fagophrum was examined on the basis of 12 species and two subspecies to contribute to a better understanding of specific phylogenetic relationship within genus. Examined species have a similar mature pericarp structure, but differences among the species are found with respect to whether or not sclerotic cells are present, and what kind of is the sclerotic cell shape in theexocarp. By the comparisons with pericarp anatomical structure, they are classified into three groups. First clade is composed of F. esculentum , F. esculentum ssp. ancestralis and F. homotropicum ; second clade is consisted of F. tataricum, F. tataricum ssp. potanini and Fl cymosum ; third clade is composed of f. callianthum,F. capillatum, F. gracilipes, F. leptopodum, F.lineare, F. pleioramosum, F.statice and F.urophyllum. The phylogey based on pericarp characters was considerably consistent with ones proposed by previous authors. It also suggested that pericarp characters are useful informatino for deduceing phylogenetic phylogenetic realtionship within geneus Fagopyrum. On the other hand, morphological character evolution indicated that there are tow synapomorphies in genus. There,it was suggested that these species having selfing and homostylous characters are evolved form heterostylous and ourcrossing species.

• Animal Systematics, Evolution and Diversity
• /
• 제37권1호
• /
• pp.9-14
• /
• 2021

Invasive species threaten global biodiversity as well as human livelihood and much of the global lands are vulnerable to these threats. Numerous freshwater turtles from the northern hemisphere have been introduced in East Asian countries, including the Republic of Korea. Knowing turtle's behavioral ecology is valuable to manage introduced populations and a distinctive behavior is basking for behavioral thermoregulation. To understand the possibility of using basking to enhance trapping, we tested thermotaxis in the river cooter (Pseudemys concinna). Turtles were placed in an aquarium containing heated and non-heated mats under controlled water and air temperature, air humidity and light. We found that P. concinna stayed significantly longer on heated mats than on unheated control mats in 11 out of 18 trials, demonstrating that heat source is a potential attractant for P. concinna. We recommend the use of heat source to bait traps used for population control of invasive freshwater turtles.

• Animal Systematics, Evolution and Diversity
• /
• 제36권4호
• /
• pp.347-353
• /
• 2020

Although sea slaters Ligia have a significant role in rocky shore habitats, their taxonomic entities have not been clearly understood. In this study, we investigated whether genetic variation inferred from a nuclear genetic marker, namely amplified fragment length polymorphism (AFLP), would conform to that of a mitochondrial DNA marker. Using both the mitochondrial DNA marker and the AFLP marker amplified by the six selective primer sets, we analyzed 95 Ligia individuals from eight locations from East Asia. The direct sequencing of mitochondrial 16S rRNA gene revealed three distinct genetic lineages, with 9.8-11.7 Kimura 2-parameter genetic distance. However, the results of AFLP genotyping analysis with 691 loci did not support those of mitochondrial DNA, and revealed an unexpectedly high proportion of shared polymorphisms among lineages. The inconsistency between the two different genetic markers may be explained by difference in DNA evolutionary history, for example inheritance patterns, effective population size, and mutation rate. The other factor is a possible genomic island of speciation, in that most of the genomic parts are shared among lineages, and only a few genomic regions have diverged.

• 식물분류학회지
• /
• 제52권3호
• /
• pp.127-143
• /
• 2022

This study was conducted to clarify the phylogenetic position and relationships of Korean Poaceae taxa. A total of 438 taxa including 155 accessions of Korean Poaceae (representing 92% and 72% of Korean Poaceous genera and species, respectively) were employed for phylogeny reconstruction. Sequence data of eight chloroplast DNA markers were used for molecular phylogenetic analyses. The resulted phylogeny was mostly concordant with previous phylogenetic hypotheses, especially in terms of subfamilial and tribal relationships. Several taxa-specific indels were detected in the molecular phylogeny, including a 45 bp deletion in rps3 (PACMAD [Panicoideae, Arundinoideae, Chloridoideae, Micrairoideae, Aristidoideae, Danthonioideae] clade), a 15 bp deletion in ndhF (Oryzeae + Phyllorachideae), a 6 bp deletion in trnLF (Poeae s.l.), and two (17 bp and 378 bp) deletions in atpF-H (Pooideae). The Korean Poaceae members were classified into 23 tribes, representing eight subfamilies. The subfamilial and tribal classifications of the Korean taxa were generally congruent with a recently published system, whereas some subtribes and genera were found to be non-monophyletic. The taxa included in the PACMAD clade (especially Andropogoneae) showed very weak and uncertain phylogenetic relationships, presumably to be due to evolutionary radiation and polyploidization. The reconstructed phylogeny can be utilized to update the taxonomic positions of the newly examined grass accessions.

• Parasites, Hosts and Diseases
• /
• 제57권6호
• /
• pp.699-704
• /
• 2019

Anisakiasis (anisakidosis) refers to a foodborne zoonosis caused by ingesting raw or undercooked marine fish or cephalopods infected with anisakid larvae. The present study was performed to investigate the prevalence of anisakid larvae in anchovies (Engraulis japonica) purchased from 2 local markets in Gyeongsangnam-do, the Republic of Korea (=Korea), during 2018-2019. Anchovies were transported to our laboratory and examined by pepsin-HCl artificial digestion technique followed by microscopic observations and molecular analyses. The overall prevalence of anisakid larvae was 19.5% (39/200), from which a total of 51 larvae (av. 1.3 larvae/infected anchovy) were recovered. Sequencing of the larvae targeting the ITS region, including ITS1, 5.8S rRNA, and ITS2 genes confirmed the species of larvae as Anisakis pegreffii (54.9%; 28/51), Hysterothylacium sinense (23.5%; 12/51), and Hysterothylacium aduncum (21.5%; 11/51). The results suggested that anchovies could be a potential source of human anisakiasis in Korea.

• 한국해양바이오학회지
• /
• 제11권2호
• /
• pp.52-61
• /
• 2019

Over the past few decades, microalgae-based biotechnology conjugated with innovative CRISPR/Cas9-mediated genetic engineering has been attracted much attention for the cost-effective and eco-friendly value-added compounds production. However, the discharge of reproducible living modified organism (LMO) into environmental condition potentially causes serious problem in aquatic environment, and thus it is essential to assess potential environmental risk for human health. Accordingly, in this study, we monitored discharged genetically modified microalgae (GMM) near the research complex which is located in Daejeon, South Korea. After testing samples obtained from 6 points of near streams, several green-colored microalgal colonies were detected under hygromicin-containing agar plate. By identification of selection marker genes, the GMM was not detected from all the samples. For the lab-scale environmental risk assessment of GMM, acute toxicity test using rotifer Brachionus calcyflorus was performed by feeding GMM. After feeding, there was no significant difference in mortality between WT and transformant Chlamydomonas reinhardtii. According to further analysis of horizontal transfer of green fluorescence protein (GFP)-coding gene after 24 h of incubation in synthetic freshwater, we concluded that the GFP-expressed gene not transferred into predator. However, further risk assessments and construction of standard methods including prolonged toxicity test are required for the accurate ecological risk assessment.

• Animal Systematics, Evolution and Diversity
• /
• 제32권1호
• /
• pp.28-37
• /
• 2016

We describe the morphological characteristics of two morids, Gadella jordani and Physiculus japonicus, belonging to the order Gadiformes, based on Korean specimens collected from the Korean ocean. Two specimens of Gadella jordani was first collected from Jeju Island, Korea and the East Sea, Korea, in 2013-2014. This species is characterized by 8, 67-69 dorsal fin rays, 66-71 anal fin rays, 5+13 gill rakers, no barbel on the lower jaw, no vomerine teeth, and a ventral luminous organ closer to the anus than to the interventral line. We described it as the first record to the Korean fish fauna, and proposed the new Korean name "Min-su-yeom-dae-gu-sok" for the genus Gadella, and "Min-su-yeom-dae-gu" for the species G. jordani. Physiculus japonicus was first reported by Koh and Moon in the year 1999 based on a single specimen in Korea. However, no study has been attempted to describe the morphological characteristics in Korea since then. In 2013-2014, three specimens of P. japonicus was collected from Jeju Island, Korea and the East Sea, Korea, and we redescribe P. japonicus in detail. This species is characterized by 9-10, 63-64 dorsal fin rays, 70-73 anal fin rays, 3+7-8 gill rakers, a short barbel on the lower jaw, and a ventral luminous organ equidistant between the interventral line and the anus.

• Animal Systematics, Evolution and Diversity
• /
• 제25권3호
• /
• pp.325-329
• /
• 2009

Lepomis macrochirus from the family Centrarchidae, commonly known as Bluegill sunfish, is an introduced freshwater fish in Korea that thrives in lakes, ponds, reservoirs and rivers. Since its introduction into Korea in 1969, Lepomis macrochirus has rapidly dispersed out and increased in number almost all over the freshwater ecosystems in Korea. Consequently this species causes a severe ecological problem, threatening native fishes due to its omnivorous foraging behaviors upon fish juveniles and many freshwater invertebrates. To address population genetic structure of L. macrochirus, 74 fish samples from 10 populations were collected and compared for their mitochondrial D-loop control region. As the result we found that the genetic diversity of L. macrochirus is extremely low such as resulting only four haplotypes with a few nucleotide differences among them. Analysis of molecular variance (AMOVA) revealed that the source of population genetic variation is largely retained in the comparisons among individuals within populations, while it is relatively low with slight significance at the highest hierarchical group. This distribution pattern differs from what is expected when biogeography is under the influence of natural geographic barriers such as mountain ranges in Korea. Instead the result is accord with the influential role of random spreading events facilitated by local people for aquaculture and fishing, and subsequent dispersals since its single point of introduction into Korea.

• Animal Systematics, Evolution and Diversity
• /
• 제8권2호
• /
• pp.231-242
• /
• 1992

한국에 서식하고 잇는 집쥐속 2종 (곰쥐, Rattus rattus Linnaeus; 집쥐, Rattus norvegicus Berkenhaut)의 채집된 표본들의 31개 형태적 형질들을 통계적으로 분석하여 종내 지리적 변이와 종간 차이를 구명하였다. 염색체 G-bands와 C-bands도 비교하였으며, 미토콘드리아 DNA의 제한요소에 의한 절단 단편들의 분석도 하였다. 한국내 여섯지역의 곰쥐들은 형태적 형질에 있어서 서로 비슷하였다: 두동장, 미장, 염색체 핵형과 C-bands에 있어서는 일본산 곰쥐인 Rattus rattus tanezumi와 유사하였다. 한국내 일곱지역의 집쥐들은 형태적 형질에 있어서 서로 비슷하였다: 염색체 핵형은 동부 아시아산 집쥐인 Rattus norvegicus caraco와 유사하였다. 집쥐와 곰쥐는 형태적으로 형질뿐만 아니라, 염색체 핵형과 미토콘드리아 DNA도 차이가 있었다. 한국에 서식하고 있는 곰쥐의 옳바른 학명은 Rattus rattus tanezumi Temminck이고, 집쥐의 학명은 Rattus norvegicus caraco Pallas이며, 집쥐는 곰쥐와 다른 종임이 확인되었다.