• Journal of Microbiology and Biotechnology
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• 제18권4호
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• pp.631-638
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• 2008

Tandem affinity purification (TAP) method combined with LC-MS/MS is the most accurate and reliable way to study the interaction of proteins or proteomics in a genome-wide scale. For the first time, we used a TAP-tag as a mutagenic tool to disrupt protein interactions at the specific site. Although lots of commonly used mutational tools exist to study functions of a gene, such as deletional mutations and site-directed mutagenesis, each method has its own demerit. To test the usefulness of a TAP-tag as a mutagenic tool, we applied a TAP-tag to RNA polymerase II, which is the key enzyme of gene expression and is controlled by hundreds of transcription factors even to transcribe a gene. Our experiment is based on the hypothesis that there will be interrupted interactions between Pol II and transcription factors owing to the TAP-tag attached at the C-terminus of each subunit of Pol II, and the abnormality caused by interrupted protein interactions can be observed by measuring a cell-cycle of each yeast strain. From ten different TAP-tagged strains, Rpb7- and Rpb12-TAP-tagged strains show severe defects in growth rate and morphology. Without a heterodimer of Rpb4/Rpb7, only the ten subunits Pol II can conduct transcription normally, and there is no previously known function of Rpb7. The observed defect of the Rpb7-TAP-tagged strain shows that Rpb7 forms a complex with other proteins or compounds and the interruption of the interaction can interfere with the normal cell cycle and morphology of the cell and nucleus. This is a novel attempt to use a TAP-tag as a proteomic tool to study protein interactions.

• 콘크리트학회논문집
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• 제16권3호
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• pp.397-406
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• 2004

최근 개발된 3차원 콘크리트 구성모델을 사용하여 구속을 받는 콘크리트와 철근콘크리트 기둥의 해석을 수행하였다. 편차응력과 체적응력 간의 상호작용이 포함되어있고, 비례 및 비례하지 않는 하중을 받는 경우에도 적용 가능한 아탄성 직교 콘크리트 구성모델을 변형률 제어 모델로 전산화하였다. 유한요소 전산화 과정에서 손상균열모델을 사용하였고, 균열은 주변형률 방향에 따라 회전 가능한 것으로 모델링하였다. 콘크리트 구성모델을 구속을 받는 콘크리트 공시체의 실험결과 그리고 캘리포니아 대학(샌디에고)에서 수행된 3개의 철근콘크리트 기둥의 실험결과와 비교하였다. 이를 통하여 비선형 콘크리트 구성모델에 근거한 유한요소해석 결과가 실험에서 관찰된 주요한 특징들을 잘 예측하고 있음을 보여주었다.

• Journal of Microbiology and Biotechnology
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• 제30권6호
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• pp.903-911
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• 2020

Addition of probiotics to yogurt with desired health benefits is gaining increasing attention. To further understand the effect of probiotic Lactobacillus plantarum on the quality and function of fermented milk, probiotic fermented milk (PFM) made with probiotic L. plantarum K25 and yogurt starter (L. delbrueckii ssp. bulgaricus and Streptococcus thermophilus) was compared with the control fermented milk (FM) made with only the yogurt starter. The probiotic strain was shown to survive well with a viable count of 7.1 ± 0.1 log CFU/g in the PFM sample after 21 days of storage at 4℃. The strain was shown to promote formation of volatiles such as acetoin and 2,3-butanediol with milk fragrance, and it did not cause post-acidification during refrigerated storage. Metabolomics analysis by GC-MS datasets coupled with multivariate statistical analysis showed that addition of L. plantarum K25 increased formation of over 20 metabolites detected in fermented milk, among which γ-aminobutyric acid was the most prominent. Together with several other metabolites with relatively high levels in fermented milk such as glyceric acid, malic acid, succinic acid, glycine, alanine, ribose, and 1,3-dihydroxyacetone, they might play important roles in the probiotic function of L. plantarum K25. Further assay of the bioactivity of the PFM sample showed significant (p < 0.05) increase of ACE inhibitory activity from 22.3% at day 1 to 49.3% at day 21 of the refrigerated storage. Therefore, probiotic L. plantarum K25 could be explored for potential application in functional dairy products.

• 대한기계학회논문집A
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• 제34권7호
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• pp.911-917
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• 2010

본 연구에서는 열적-기계적 주기하중을 받고 있는 엔진 배기매니폴드에 대해서 열응력 해석방법과 열피로수명 예측과정을 제시하였다. 즉, 파손현상이 복잡한 배기시스템의 효율적인 유한요소 모델링 방법과 온도 의존성 재료의 시험결과를 이용한 해석 데이터 구성, 그리고 열사이클 하중에 대한 열응력 및 파손 예측방법을 디젤엔진의 배기매니폴드에 대해서 나타내었다. 일반적으로 배기매니폴드의 파손 취약부에서는 고온영역에서 큰 압축소성변형이 발생하고 냉각시에는 인장의 잔류응력이 나타난다. 따라서 이같은 응력과 변형률의 이력곡선으로부터 소성변형의 진폭 또는 소성에너지의 크기를 얻을 수 있으며 이를 통해서 피로수명을 예측할 수 있다.

• Nuclear Engineering and Technology
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• 제44권7호
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• pp.791-798
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• 2012

Since standardized fracture test specimens cannot be easily extracted from in-service components, several alternative fracture toughness test methods have been proposed to characterize the deformation and fracture resistance of materials. One of the more promising alternatives is the local approach employing the SP(Small Punch) testing technique. However, this process has several limitations such as a lack of anisotropic yield potential and tediousness in the damage parameter calibration process. The present paper investigates estimation of ductile fracture resistance(J-R) curve by FE(Finite Element) analyses using an anisotropic damage model and enhanced calibration procedure. In this context, specific tensile tests to quantify plastic strain ratios were carried out and SP test data were obtained from the previous research. Also, damage parameters constituting the Gurson-Tvergaard-Needleman model in conjunction with Hill's 48 yield criterion were calibrated for a typical nuclear reactor material through a genetic algorithm. Finally, the J-R curve of a standard compact tension specimen was predicted by further detailed FE analyses employing the calibrated damage parameters. It showed a lower fracture resistance of the specimen material than that based on the isotropic yield criterion. Therefore, a more realistic J-R curve of a reactor material can be obtained effectively from the proposed methodology by taking into account a reduced load-carrying capacity due to anisotropy.

• Structural Engineering and Mechanics
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• 제37권2호
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• pp.149-162
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• 2011

The aim of this research is a comprehensive review and evaluation of beam theories resting on elastic foundations that used to model mode-I delamination in multidirectional laminated composite by DCB specimen. A compliance based approach is used to calculate critical strain energy release rate (SERR). Two well-known beam theories, i.e. Euler-Bernoulli (EB) and Timoshenko beams (TB), on Winkler and Pasternak elastic foundations (WEF and PEF) are considered. In each case, a closed-form solution is presented for compliance versus crack length, effective material properties and geometrical dimensions. Effective flexural modulus ($E_{fx}$) and out-of-plane extensional stiffness ($E_z$) are used in all models instead of transversely isotropic assumption in composite laminates. Eventually, the analytical solutions are compared with experimental results available in the literature for unidirectional ($[0^{\circ}]_6$) and antisymmetric angle-ply ($[{\pm}30^{\circ}]_5$, and $[{\pm}45^{\circ}]_5$) lay-ups. TB on WEF is a simple model that predicts more accurate results for compliance and SERR in unidirectional laminates in comparison to other models. TB on PEF, in accordance with Williams (1989) assumptions, is too stiff for unidirectional DCB specimens, whereas in angle-ply DCB specimens it gives more reliable results. That it shows the effects of transverse shear deformation and root rotation on SERR value in composite DCB specimens.

• Steel and Composite Structures
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• 제33권1호
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• pp.67-79
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• 2019

Composite columns made of high strength materials have been used in high-rise construction owing to its excellent structural performance resulting in smaller cross-sectional sizes. However, due to the limited understanding of its structural response, current design codes do not allow the use of high strength materials beyond a certain strength limit. This paper reports additional test data, analytical and numerical studies leading to a new design method to predict the ultimate resistance of composite columns made of high strength steel and high strength concrete. Based on previous study on high strength concrete filled steel tubular members and ongoing work on high strength concrete encased steel columns, this paper provides new findings and presents the feasibility of using high strength steel and high strength concrete for general double symmetric composite columns. A nonlinear finite element model has been developed to capture the composite beam-column behavior. The Eurocode 4 approach of designing composite columns is examined by comparing the test data with results obtained from code's predictions and finite element analysis, from which the validities of the concrete confinement effect and plastic design method are discussed. Eurocode 4 method is found to overestimate the resistance of concrete encased composite columns when ultra-high strength steel is used. Finally, a strain compatibility method is proposed as a modification of existing Eurocode 4 method to give reasonable prediction of the ultimate strength of concrete encased beam-columns with steel strength up to 900 MPa and concrete strength up to 100 MPa.

• Coupled systems mechanics
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• 제4권4호
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• pp.279-295
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• 2015

The article presents a theoretical-experimental approach developed for modeling the coefficient of sliding friction in the dynamic system tool-workpiece in slide diamond burnishing of low-alloy unhardened steels. The experimental setup, implemented on conventional lathe, includes a specially designed device, with a straight cantilever beam as body. The beam is simultaneously loaded by bending (from transverse slide friction force) and compression (from longitudinal burnishing force), which is a reason for geometrical nonlinearity. A method, based on the idea of separation of the variables (time and metric) before establishing the differential equation of motion, has been applied for dynamic modeling of the beam elastic curve. Between the longitudinal (burnishing force) and transverse (slide friction force) forces exists a correlation defined by Coulomb's law of sliding friction. On this basis, an analytical relationship between the beam deflection and the sought friction coefficient has been obtained. In order to measure the deflection of the beam, strain gauges connected in a "full bridge" type of circuit are used. A flexible adhesive is selected, which provides an opportunity for dynamic measurements through the constructed measuring system. The signal is proportional to the beam deflection and is fed to the analog input of USB DAQ board, from where the signal enters in a purposely created virtual instrument which is developed by means of Labview. The basic characteristic of the virtual instrument is the ability to record and visualize in a real time the measured deflection. The signal sampling frequency is chosen in accordance with Nyquist-Shannon sampling theorem. In order to obtain a regression model of the friction coefficient with the participation of the diamond burnishing process parameters, an experimental design with 55 experimental points is synthesized. A regression analysis and analysis of variance have been carried out. The influence of the factors on the friction coefficient is established using sections of the hyper-surface of the friction coefficient model with the hyper-planes.

• Mycobiology
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• 제44권3호
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• pp.155-161
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• 2016

The most economically important species used in a wide range of fermentation industries throughout Asia belong to Aspergillus section Flavi, which are morphologically and phylogenetically indistinguishable, with a few being toxigenic and therefore a major concern. They are frequently isolated from Korean fermentation starters, such as nuruk and meju. The growing popularity of traditional Korean alcoholic beverages has led to a demand for their quality enhancement, therefore requiring selection of efficient non-toxigenic strains to assist effective fermentation. This study was performed to classify the most efficient strains of Aspergillus section Flavi isolated from various types of traditional wheat nuruk, based on a polyphasic approach involving molecular and biochemical evaluation. A total of 69 strains were isolated based on colony morphology and identified as Aspergillus oryzae/flavus based on internal transcribed spacer and calmodulin gene sequencing. Interestingly, none were toxigenic based on PCR amplification of intergenic regions of the aflatoxin cluster genes norB-cypA and the absence of aflatoxin in the culture supernatants by thin-layer chromatography analysis. Saccharification capability of the isolates, assessed through ${\alpha}-amylase$ and glucoamylase activities, revealed that two isolates, TNA24 and TNA15, showed the highest levels of activity. Although the degrees of variation in ${\alpha}-amylase$ and glucoamylase activities among the isolates were higher, there were only slight differences in acid protease activity among the isolates with two, TNA28 and TNA36, showing the highest activities. Furthermore, statistical analyses showed that ${\alpha}-amylase$ activity was positively correlated with glucoamylase activity (p < 0.001), and therefore screening for either was sufficient to predict the saccharifying capacity of the Aspergillus strain.

• Structural Engineering and Mechanics
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• 제35권5호
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• pp.571-592
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• 2010

An energy-based fatigue life prediction framework was previously developed by the authors for prediction of axial, bending and shear fatigue life at various stress ratios. The framework for the prediction of fatigue life via energy analysis was based on a new constitutive law, which states the following: the amount of energy required to fracture a material is constant. In the first part of this study, energy expressions that construct the constitutive law are equated in the form of total strain energy and the distortion energy dissipated in a fatigue cycle. The resulting equation is further evaluated to acquire the equivalent stress per cycle using energy based methodologies. The equivalent stress expressions are developed both for biaxial and multiaxial fatigue loads and are used to predict the number of cycles to failure based on previously developed prediction criterion. The equivalent stress expressions developed in this study are further used in a new finite element procedure to predict the fatigue life for two and three dimensional structures. In the second part of this study, a new Quadrilateral fatigue finite element is developed through integration of constitutive law into minimum potential energy formulation. This new QUAD-4 element is capable of simulating biaxial fatigue problems. The final output of this finite element analysis both using equivalent stress approach and using the new QUAD-4 fatigue element, is in the form of number of cycles to failure for each element on a scale in ascending or descending order. Therefore, the new finite element framework can provide the number of cycles to failure at each location in gas turbine engine structural components. In order to obtain experimental data for comparison, an Al6061-T6 plate is tested using a previously developed vibration based testing framework. The finite element analysis is performed for Al6061-T6 aluminum and the results are compared with experimental results.