• Title/Summary/Keyword: strain profile

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Extracellular Proteome Profiling of Bacillus pumilus SCU11 Producing Alkaline Protease for Dehairing

  • Wang, Chao;Yu, Shiqiang;Song, Ting;He, Tingting;Shao, Huanhuan;Wang, Haiyan
    • Journal of Microbiology and Biotechnology
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    • v.26 no.11
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    • pp.1993-2005
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    • 2016
  • Bacillus pumilus is one of the most characterized microorganisms that are used for high-level production of select industrial enzymes. A novel B. pumilus SCU11 strain possessing high alkaline protease activity was obtained in our previous work. The culture supernatant of this strain showed efficient dehairing capability with minimal collagen damage, indicating promising potential applications in the leather industry. In this study, the strain's extracellular proteome was identified by LC-MS/MS-based shotgun proteomic analysis, and their related secretory pathways were characterized by BLAST searches. A total of 513 proteins, including 100 actual secreted and 413 intracellular proteins, were detected in the extracellular proteome. The functions of these secreted proteins were elucidated and four complete secretory systems (Sec, Tat, Com, and ABC transporter) were proposed for B. pumilus. These data provide B. pumilus a comprehensive extracellular proteome profile, which is a valuable theoretical and applicative basis for future genetic modifications and development of industrial enzymes.

Strengthening of steel-concrete composite beams with composite slab

  • Subhani, Mahbube;Kabir, Muhammad Ikramul;Al-Amer, Riyadh
    • Steel and Composite Structures
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    • v.34 no.1
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    • pp.91-105
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    • 2020
  • Steel-concrete composite beam with profiled steel sheet has gained its popularity in the last two decades. Due to the ageing of these structures, retrofitting in terms of flexural strength is necessary to ensure that the aged structures can carry the increased traffic load throughout their design life. The steel ribs, which presented in the profiled steel deck, limit the use of shear connectors. This leads to a poor degree of composite action between the concrete slab and steel beam compared to the solid slab situation. As a result, the shear connectors that connects the slab and beam will be subjected to higher shear stress which may also require strengthening to increase the load carrying capacity of an existing composite structure. While most of the available studies focus on the strengthening of longitudinal shear and flexural strength separately, the present work investigates the effect of both flexural and longitudinal shear strengthening of steel-concrete composite beam with composite slab in terms of failure modes, ultimate load carrying capacity, ductility, end-slip, strain profile and interface differential strain. The flexural strengthening was conducted using carbon fibre reinforced polymer (CFRP) or steel plate on the soffit of the steel I-beam, while longitudinal shear capacity was enhanced using post-installed high strength bolts. Moreover, a combination of both the longitudinal shear and flexural strengthening techniques was also implemented (hybrid strengthening). It is concluded that hybrid strengthening improved the ultimate load carrying capacity and reduce slip and interface differential strain that lead to improved composite action. However, hybrid strengthening resulted in brittle failure mode that decreased ductility of the beam.

Cytochrome P450 and the glycosyltransferase genes are necessary for product release from epipyrone polyketide synthase in Epicoccum nigrum

  • Choi, Eun Ha;Park, Si-Hyung;Kwon, Hyung-Jin
    • Journal of Applied Biological Chemistry
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    • v.64 no.3
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    • pp.225-236
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    • 2021
  • The epipyrone (EPN) biosynthetic gene cluster of Epicoccum nigrum is composed of epnC, epnB, and epnA, which encode cytochrome P450 oxidase, glycosyltransferase, and highly reducing polyketide synthase, respectively. Gene inactivation mutants for epnA, epnB, and epnC were previously generated, and it was found that all of them were incapable of producing EPN and any of its related compounds. It was also reported that epnB inactivation abolished epnA transcription, generating ΔepnAB. This study shows that the introduction of native epnC readily restored EPN production in ΔepnC, suggesting that epnC is essential for polyketide release from EpnA and implies that EpnC works during the polyketide chain assembly of EpnA. Introduction of epnC promoter-epnA restored EPN production in ΔepnA. The ΔepnB genotype was prepared by introducing the epnA expression vector into ΔepnAB, and it was found that the resulting recombinant strain did not produce any EPN-related compounds. A canonical epnB inactivation strain was also generated by deleting its 5'-end. At the deletion point, an Aspergllus nidulans gpdA promoter was inserted to ensure the transcription of epnA, which is located downstream of epnB. Examination of the metabolite profile of the resulting ΔepnB mutant via LC-mass spectrometry verified that no EPN-related compound was produced in this strain. This substantiates that C-glycosylation by EpnB is a prerequisite for the release of EpnA-tethered product. In conclusion, it is proposed that cytochrome P450 oxidase and glycosyltransferase work in concert with polyketide synthase to generate EPN without the occurrence of any free intermediates.

Prevalence and Characteristics of Salmonella spp. Isolated from Raw Chicken Meat in the Republic of Korea

  • Koh, Youngho;Bae, Yunyoung;Lee, Yu-Si;Kang, Dong-Hyun;Kim, Soon Han
    • Journal of Microbiology and Biotechnology
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    • v.32 no.10
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    • pp.1307-1314
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    • 2022
  • In this study, we sought to investigate the various characteristics of Salmonella spp. isolated from raw chicken meats available in Korean markets. The data collected, such as food source of isolation, sampling information, serotype, virulence, and genetic profile including sequence type, were registered in the database for further comparative analysis of the strains isolated from the traceback investigation samples. To characterize serotype, virulence and gene sequences, we examined 113 domestically distributed chicken meat samples for contamination with Salmonella spp. Phylogenetic analysis was conducted on 24 strains (21.2%) of Salmonella isolated from 113 commercially available chicken meats and by-products, using pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST). Serotyping of the isolated Salmonella spp. revealed S. Enteritidis in 11 strains (45.8%), S. Virchow in 6 strains (25%), S. Montevideo in 2 strains (8.3%), S. Bsilla in 2 strains (8.3%), S. Bareilly in 1 strain (4.2%), S. Dessau in 1 strain (4.2%), and S. Albany in 1 strain (4.2%). The genetic correlation indicated that 24 isolated strains were classified into 18 clusters with a genetic similarity of 64.4-100% between them. Eleven isolated S. Enteritidis strains were classified into 9 genotypes with a sequence identity of 74.4%, whereas the most distantly related S. Virchow was divided into five genotypes with 85.9% identity. Here, the MLST analysis indicated that the major Sequence Type (ST) of the Salmonella spp. isolated from domestic chicken sold in Chungcheong Province belongs to the ST 11 and 16, which differs from the genotype of Salmonella isolated from imported chicken. The differential sequence characteristics can be a genetic marker for identifying causative bacteria for epidemiological investigations of food poisoning.

Warm Formability Variation of AZ31 Sheet by Double Stage Forming Velocity (이단성형속도에 따른 AZ31판재 온간 성형성 변화)

  • Kim, H.K.;Kim, J.D.;Heo, Y.M.
    • Transactions of Materials Processing
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    • v.18 no.2
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    • pp.112-115
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    • 2009
  • Press forming of magnesium alloy sheet is conducted at elevated temperatures to improve the press formability due to its low formability at room temperature. At elevated temperatures, magnesium alloy sheet formability is known to be very sensitive to the strain rate. In this paper, warm deep drawing tests of magnesium alloy AZ31 sheet was conducted under double forming velocity as well as single forming velocity to examine the formability change by forming velocity profile. The observed formability improvement by double forming velocity was analyzed by using the finite element analysis.

Metabolic Characterization of the Corynebacterium glutamicum using DNA Microarray Technology

  • Jo, Gwang-Myeong;Jang, Jae-U;Kim, Seong-Jun;Park, Yeong-Hun
    • 한국생물공학회:학술대회논문집
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    • 2001.11a
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    • pp.739-740
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    • 2001
  • DNA microarray with a set of 37 Corynebacterium glutamicum genes encoding enzymes for primary metabolism of glycolysis, TCA cycle and lysine biosynthesis, anaplerosis etc was constructed on slide glass in triplicate. With this DNA microarray, metabolic characteristics of the lysine-producing strain was analyzed during different phase of the cultivation. The major differences in using glucose as a carbon source instead of sucrose was found in the anaplerolytic enzymes, which control the interconversion of C3 and C4 metabolites. Also, the expression profile of these major enzymes was found to be quite distinct among different phases of growth.

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Real time optimization of fed-batch culture of recombinant yeast

  • Na, Jeong-Geol;Kim, Hyeon-Han;Jang, Yong-Geun;Jeong, Bong-Hyeon
    • 한국생물공학회:학술대회논문집
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    • 2001.11a
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    • pp.81-84
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    • 2001
  • A real time optimization algorithm for fed-batch cultures of recombinant yeast to determine the optimal substrate feed rate profile has been developed. Its development involved four key steps: (1) development of reliable adaptive model. (2) development of optimization algorithm. (3) design of on-line model update algorithm to be incorporated into the optimization algorithm and (4) experimental validation. A recombinant Saccharomyces cerevisiae producing human parathyroid hormone (hPTH) was chosen as the model strain. It was found to be very successful in maintaining cell growth and galactose consumption at leigh levels, thus resulting in significant improvements in the productivity (up to 2.1 times) and intact hPTH concentration (up to 1.5 times) compared with the case of an intermittent glucose and galactose, or galactose feeding.

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Effect of Water Extract from Stem Bark of Rhus verniciflua Stokes on the Concentrations of Lipid and Lipid Peroxidation in Mice (옻나무 수피 추출물이 마우스의 지질농도 및 지질과산화에 미치는 영향)

  • 차재영;조영수
    • Journal of Life Science
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    • v.10 no.5
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    • pp.467-474
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    • 2000
  • Male mice (ddY strain) were fed a laboratory chow diet containing the water extract from stem bark of Rhus verniciflua Stokes (RVS) for 14 days. There were no significant difference in body weight gain, feed intake, the hepatic lipid profile and serum total cholesterol and phodpholipid concentrations. The concentration of triglyceride in serum was significantly lower in the RVS group than that in the control group. The concentration of high-density-lipoprotein cholestrol in serum was significantly higher in the RVS group than that in the control group. The methanol extract from RVS stem bark effectively inhibited the formation of thiobarbituric acid-reactive substances as a marker of lipid peroxidation of liver microsomes in a concentration-dependent manner. This study showed that the water extract from stem bark of RVS decreased the serum triglyceride concentration and methanol extract has an antioxidative activity.

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Development of a Tool Deflection Compensation System for Precision End-milling (고정밀 밀링가공을 위한 공구처짐 보정시스템 개발)

  • 최종근;양민양
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 1993.10a
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    • pp.42-46
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    • 1993
  • This paper presents development of a pratical tool deflection compensation system in order to reduce the machining error by the tool deflection in the end-milling process. The system is a tool adapter which includes 2-axis force sensor for detecting tool deflection and 2-axis tool tilting device for adjusting tool position through computer interface in on-line process. In experiments, it is revealed that the force sensor applying parallel plate principle and strain gauge is proper to obtain dynamic process signal, and the tilting device using stepping motor and cam drive mechanism is suitable to have necessary action. By the system and control algorithm, it is possible to get precise machining surface profile without excessive machining error and overcut generated due to increased cutting force in more productive machining condition.

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A Study on the Stress and Displacement Behaviors of an aluminum Tube in OPC Toner Cartridge (토너카트리지 OPC 드럼용 Al 튜브의 응력 및 변형거동에 관한 연구)

  • Kim, Chung-Kyun
    • Tribology and Lubricants
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    • v.23 no.3
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    • pp.89-94
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    • 2007
  • The stress and displacement behavior analysis of an aluminum tube for an organic photo conductor drum has been presented using a finite element analysis technique by non-linear FEM program. The maximum displacement in the radial direction of OPC drum may directly affect to the quality of printed matter. Thus, the deformed profile of the aluminum tubes should be limited depending on the toner powder size and the contact rolling forces between an OPC drum and a paper. This paper recommends the critical loading of 400 Pa for the provided toner size, $8{\mu}m$ for excellent printed matters and long life of the toner cartridge.