• Journal of Microbiology
• /
• v.44 no.1
• /
• pp.83-91
• /
• 2006

The sudden appearance and potential lethality of severe acute respiratory syndrome (SARS)-associated coronavirus (SARS-CoV) in humans has resulted in a focusing of new attention on the determination of both its origins and evolution. The relationship existing between SARS-CoV and other groups of coronaviruses was determined via analyses of phylogenetic trees and comparative genomic analyses of the coronavirus genes: polymerase (Orflab), spike (S), envelope (E), membrane (M) and nucleocapsid (N). Although the coronaviruses are traditionally classed into 3 groups, with SARS-CoV forming a $4^{th}$ group, the phylogenetic position and origins of SARS-CoV remain a matter of some controversy. Thus, we conducted extensive phylogeneitc analyses of the genes common to all coronavirus groups, using the Neighbor-joining, Maximum-likelihood, and Bayesian methods. Our data evidenced largely identical topology for all of the obtained phylogenetic trees, thus supporting the hypothesis that the relationship existing between SARS-CoV and group 2 coronavirus is a monophyletic one. Additional comparative genomic studies, including sequence similarity and protein secondary structure analyses, suggested that SARS-Co V may bear a closer relationship with group 2 than with the other coronavirus groups. Although our data strongly suggest that group 2 coronaviruses are most closely related with SARS-CoV, further and more detailed analyses may provide us with an increased amount of information regarding the origins and evolution of the coronaviruses, most notably SARS-CoV.

• Korean Journal of Veterinary Service
• /
• v.32 no.4
• /
• pp.293-298
• /
• 2009

Porcine respiratory coronavirus (PRCV) is antigenically related to transmissible gastroenteritis virus (TGEV). Differential serological diagnosis between PRCV and TGEV infection is not possible with the classical sero-neutralization test. Infection with PRCV or TGEV induces antibodies which neutralize both viruses to the same titer. However, the enzyme-linked immunosorbent assay (ELISA) and polymerase chain reaction (PCR) can differentiate between PRCV and TGEV infection. This study was carried out to investigate the prevalence of PRCV infection of swine in Gyeongnam province. A total of 391 serum samples from 37 herds in Gyeongnam were examined for antibody to PRCV using blocking ELISA. All serum samples were collected from 130- to 150-day-old pigs between August and December 2006. By ELISA, 182 out of 391 sera tested (46.5%) and 29 out of 37 sample herds (78.4%) were positive against PRCV. Our data suggested that seropositive herds for PRCV are distributed diffusely throughout Gyeongnam. The PCR methods were established to diagnose PRCV spike protein (S) gene. PCR were conducted to identify the PRCV genome against 150 pigs in PRCV antibody positive herds.

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2017.06a
• /
• pp.75-75
• /
• 2017

Rye is cultivated on about 30,000ha domestically for forage and green-manure production in Korea. 'Daegokgreen' has been developed as a good quality rye cultivar for forage and green-manure, which was doubled-chromosome by colchicine treatment of diploid rye cultivar 'Gogu' in 2010. By the colchicine treatment with 0.05% for 12 hours at $2^{nd}$ leaf stage of 'Gogu', 31 tetraploid plants were obtained and they produced 2,470 seeds with 135 spikes. There was 4.4 in the number of spikes per plant, 18.3 in grain number per spike, and 37.6 g in the1,000-grain weight. The heading date of 'Daegokgreen' was April 11, which was two days later on average compared with 'Gogu'. The biomass (fresh weight) of 'Daegokgreen' was 3,701kg, which was similar to 'Gogu'. The average crude protein content of 'Daegokgreen' was 8.9%, which was 1.0% point higher than 'Gogu'. 'Daegokgreen' was found to be strong resistant to winter-kill and can be adapted to before maize cultivation.

• KOREAN JOURNAL OF CROP SCIENCE
• /
• v.48 no.6
• /
• pp.501-505
• /
• 2003

The growth characteristics and damage of naked barley infected with barley yellow mosaic virus (BaYMV) were investigated between resistant and susceptible varieties in habitual field plot of BaYMV BaYMV of the barley plants with typical disease symptom were identified by enzyme linked immunosorbent assay (ELISA) test. The visual degree (0-9) based on disease symptoms of BaYMV was different as 9 and 1 between susceptible variety Baegdong and resistant variety Naehanssalbori, respectively. Susceptible variety, Baegdong showed significant damage in culm length, number of kernel per spike and tiller per square meter but not in 1,000 kernel weight, so these results caused yield reduction to only 80% comparing to the control. Seed germination did not affected by BaYMV infection both in susceptible and resistant variety. In grain quality test, abortive grain yale and crude protein content were significantly increased compared to the control. The relationships between BaYMV infection and growth characteristics showed the negative correlations in culm length, number of tiller, 1000 kernel weight and yield, but it showed the positive correlation in crude protein contents. These results implied that BaYMV can affect not only barley growth and yield but grain quality.

• KOREAN JOURNAL OF CROP SCIENCE
• /
• v.37 no.1
• /
• pp.37-44
• /
• 1992

Germinability, electrophoretic variation of protein of shattered seeds during overwintering and characteristic of main agronomic traits of off-type rice plant occurring in paddy field harvested by combine were investigated. Germinability of shattered seed decreased as time goes in paddy field in both Japonica and Tongil type varieties. Electrophoretic protein bands become more and more light as time goes. Occurrence of off-type rice plant was higher in Japonica varieties than in Tongil type varieties. Off-type rice plant was shorter in plant height, leaf length, tiller number per hill, internode length, panicle length and spike let number per panicle. Germinability of seeds of off-type rice plant as not significantly different compared to the control variety. Yield of off-type plants of Japonica varieties was on average 5.1kg / 10a and that of Tongil type varieties was on average 0.9kg /10a. Mixing ratio to the control variety was about 0.7% in Japonica varieties and that of Tongil type varieties was about 0.1%.

• Molecules and Cells
• /
• v.44 no.9
• /
• pp.680-687
• /
• 2021

Coronavirus disease, COVID-19 (coronavirus disease 2019), caused by SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), has a higher case fatality rate in European countries than in others, especially East Asian ones. One potential explanation for this regional difference is the diversity of the viral infection efficiency. Here, we analyzed the allele frequencies of a nonsynonymous variant rs12329760 (V197M) in the TMPRSS2 gene, a key enzyme essential for viral infection and found a significant association between the COVID-19 case fatality rate and the V197M allele frequencies, using over 200,000 present-day and ancient genomic samples. East Asian countries have higher V197M allele frequencies than other regions, including European countries which correlates to their lower case fatality rates. Structural and energy calculation analysis of the V197M amino acid change showed that it destabilizes the TMPRSS2 protein, possibly negatively affecting its ACE2 and viral spike protein processing.

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2023.04a
• /
• pp.51-51
• /
• 2023

Global warming has significant effects on the growth and development of wheat and can cause a reduction in grain yield and quality. Grain quality is a major factor determining the end-use quality of flour and a reduction in quality can result economic losses. Therefore, it is necessary to study the physiological characteristic of wheat to understand its response to temperature elevation, which can aid in the development of strategies to mitigate the negative effects of high temperature and sustain wheat production. This study investigated the effects of elevated temperature on grain characteristics and quality during the grain filling period of two Korean bread wheat cultivars Baekkang and Jokyoung. These two bread wheat cultivars were subjected to an increasing temperature conditions regime; T0 (control), T1 (T0+1℃), T2 (T0+2℃) and T3 (T0+3℃). The results showed that high temperature, particularly in T3 condition, caused a significant decrease in the number of grains per spike and grain yield compared to the T0 condition. The physical properties, such as grain weight and hardness, as well as chemical properties, such as starch, protein, gluten content and SDSS, which affect the quality of wheat, were changed by high temperature during the grain filling period. The grain weight and hardness increased, while the grain size not affected by high temperature. On the other hand, amylose content decreased, whereas protein, gluten content and SDSS increased in T3 condition. In this study, high temperature within 3℃ of the optimal growth temperature of wheat, quantity properties decreased while quality-related prosperities increased. To better understand the how this affects the grain's morphology and quality, further molecular and physiological studies are necessary.

• Journal of The Korean Society of Grassland and Forage Science
• /
• v.37 no.1
• /
• pp.61-67
• /
• 2017

This experiment was conducted to obtain information of feed value and fermentative quality of wheat cultivar, 'Taejoong' to confirm availability as a whole crop silage. As a result, the heading date of 'Teajoong' is April 27, and plant height is longer than whole crop barley, 'Youngyang' or whole crop wheat, 'Cheongwoo', spike length are also large, fresh and dry matter yield are also high. In case of feed value, 'Taejoong' had higher crude protein content than whole crop barley, 'Youngyang' or whole crop wheat, 'Cheongwoo', lower NDF and ADF contents, and significantly higher digestible nutrient contents(p<0.05). In case of fermentation qulity, pH of 'Taejoong' was 4.2, and lactic acid content was lower than 'Cheongwoo' silage and significantly higher than 'Youngyang' silage(p<0.05). Acetic acid content was significantly lower than 'Youngyang' and 'Cheongwoo' silage(p<0.01), butyric acid content was significantly lower than that of 'Youngyang' silage (p<0.05). The final Flieg's score showed that 'Taejoong' silage was the best. Also income of 'Taejoong' improved than 'Youngyang' or 'Cheongwoo'. Therefore, 'Taejoong' is considered sufficiently available as whole crop for forage.

• Journal of The Korean Society of Grassland and Forage Science
• /
• v.39 no.4
• /
• pp.243-249
• /
• 2019

A barley(Hordeum vulgare L.) cultivar 'Youjin' with hooded spike type having good silage quality was developed at National Institute of Crop Science, RDA in 2016. 'Youjin' showed both high yielding and cold resistance through the preliminary and advanced yield trials(PYT, AYT) from 2012 to 2013. We conducted regional yield trials(RYT) of 'Youjin' in six locations around Korea for three years from 2014 to 2016. It had erect plant type, growth habit of II, the green leaf and hooded awn type. In the paddy field its heading date was April 24 and the maturing date was May 25. Plant height was 99 cm and the number of spikes per ㎡ was 696. It has high rate of leaf blades, resistance to BaYMV(Barley Yellow Mosiac Virus) and good winter hardiness. The average dry matter of Youjin was about 17.2 MT ha^-1 in the field. And feed quality of 'Youjin' was 10.6% of crude protein content, 24.8% of ADF(Acid Detergent Fiber), 43.5 % of NDF(Neutral Detergent Fiber), 69.1% of TDN(Total Digestible Nutrients). And also 'Youjin' had grade I of silage quality.

• Korean Journal of Breeding Science
• /
• v.41 no.4
• /
• pp.630-634
• /
• 2009

"Hyedang", a new covered cultivar derived from the crosses between "Suwon300" and "Haganemugi//CI08397/Haganemugi" developed at the Honam Agricultural Research Institute (HARI), NICS, RDA in 2007. The origin of "Hyedang" is "Iksan 407" (SB951033-B-B-B-72). The initial cross was made in 1995 and the selected line showed a high yield and good quality characteristics under yield trial test in 2004. "Iksan407" consistently performed well for three years (2005-2007) from the four locations of regional yield trial (RYT) in Korea and released as "Hyedang". The characteristics of "Hyedang" were the following: rate III growth habit, green leaf and stem, compact spike and with long rough awns. The heading date was April 25 in upland and April 17 in paddy field, which was 2 and 3 days earlier than that of check cultivar, "Olbori". The culm length was 80 cm which was 8 cm shorter than those of check cultivar. It showed spike length of 4.3 cm and 696 spikes per $m^2$, 51 grains per spike, 35.0 g of 1,000 grain weight and 704 g of test weight. It showed stronger winter hardiness and higher resistance to barley yellow mosaic virus (BaYMV) than those with check cultivar. It showed similar protein content and higher whiteness than those of the check cultivar and diastatic power was higher than that of Olbori. The average yield of the pearled grain in the RYT was $4.17ton\;ha^{-1}$ in upland and $4.27ton\;ha^{-1}$ in paddy field, which was 23% and 9% higher than that of the check cultivar, respectively. This cultivar would be suitable for the area above the daily minimum mean temperature of $-8^{\circ}C$ in January in Korean peninsula.