• Title/Summary/Keyword: species analysis

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Variability in Two Species of Osmeridae (Hypomesus nipponensis and Mallotus villosus) (바다빙어과 2종 (Hypomesus nipponensis와 Mallotus villosus)의 변이)

  • Yoon, Jong-Man
    • Development and Reproduction
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    • v.12 no.2
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    • pp.151-158
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    • 2008
  • The variability within and between Korean pond-smelt (Hypomesus nipponensis; KPS) and Canadian capelin (Mallotus villosus; CCP) were studied in order to clarify the genetic distances and differences. The dendrogram obtained by the seven primers indicates cluster 1 (KOREAN 01$\sim$KOREAN 11) and cluster 2 (CANADIAN 12$\sim$CANADIAN 22). The longest genetic distance displaying significant molecular differences was found to exist between individuals in the two geographic species of Osmeridae, between individuals' no. 10 of Korean and no. 18 of Canadian (0.686). 121 unique shared loci to each species, with an average of 17.3 per primer, were observed in the KPS species, and 264 loci, with an average of 37.7 per primer, were observed in the CCP species. 77 shared loci by the two species, with an average of 11.0 per primer, were observed in the two fish species. RAPD analysis showed that the KPS species was more genetically diverse than the CCP species. KPS species may have high levels of genomic DNA variability owing to the introduction of the wild individuals from the other sites to sampling sites although it may be the geographically diverse distribution of this species. As stated above, the existence of species discrimination and genetic variability between the KPS and the CCP species was identified by RAPD analysis.

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Benthic Environment and Community Structure of Macrobenthos at the Tidal Flats in Chung-nam, Korea (충남 갯벌 저서환경과 대형저서동물의 군집 변화)

  • Kim, Jong-Chun;Ma, Chae-Woo;Jung, Yun-Hwan
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.48 no.1
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    • pp.104-115
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    • 2015
  • This study was conducted during April-June in 2008 and 2010, following the Taean Oil Spill. We measured year-to-year changes in benthos species abundances and composition in 16 intertidal zone regions of Chungcheongnam-do. In total, 154 species were found 2008 and 134 in 2010; the mean abundance per area was $403ind./m^2$ and $242ind./m^2$, respectively. In 2008, the 10 dominant species included four species of arthropods, three species of annelids, and three species of mollusks. In 2010, dominant species included five species of annelids, three species of mollusks, one species of arthropods, and one other species. We used bray-curtis similarity to group species and found two groups in 2008 and five in 2010, complementing our NMDS analysis. Finally, we tested correlations between abiotic and biotic factors, and implemented a BIO-ENV analysis, which showed that sediment type, MZ (Phi), and organic content are important environmental factors affecting benthos in the Chung-nam tidal flats.

Molecular Phylogenetic Position of Adenophora racemosa, an Endemic Species in Korea (한국특산종 외대잔대(Adenophora racemosa)의 분자계통학적 위치)

  • Ji, Yun-Ui;Moon, Byeong-Cheol;Lee, A-Yeong;Chun, Jin-Mi;Choo, Byung-Kil;Kim, Ho-Kyoung
    • Korean Journal of Medicinal Crop Science
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    • v.18 no.6
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    • pp.379-388
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    • 2010
  • Adenophora racemosa is recently reported as a new Korean endemic plant species. However, the phylogenetic relationship of this genus has been controversial due to the morphological similarity and frequent morphological change of aerial parts. To verify the phylogenetic position of Adenophora racemosa and phylogenetic relationship of genus Adenophora, we analyzed the internal transcribed spacer (ITS) sequence of nuclear ribosomal DNA (nrDNA) and random amplified polymorphic DNA (RAPD) using 21 individual of 6 Adenophora species, A. verticillata, A. divaricata, A. racemosa, A. remotiflora, A. stricata and A. tetraphylla. In comparative analysis of the nrDNA-ITS sequences, we could not found not only any species specific nucleotide sequence but also could not estimated their inter or intra species. In the phylogenic analysis based on the RAPD derived DNA polymorphism, Adenophora species were classified into four groups by clustering analysis of the UPGMA. These results suggest that the DNA fingerprinting based on RAPD is more suitable than nrDNA-ITS sequence for the phylogenetic analysis of Adenophora species.

RFLP Analysis of the mtDNA COI Region in Four Abalone Species

  • Park, Choul-Ji;Kijima, Akihiro
    • Fisheries and Aquatic Sciences
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    • v.9 no.3
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    • pp.101-106
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    • 2006
  • The cytochrome c oxidase subunit I (COI) gene region of mitochondrial DNA (mtDNA) was examined in four abalone species to estimate its utility as a genetic marker using restriction fragment length polymorphism (RFLP) analysis. The utility was evaluated in terms of genetic divergence and relationships among Haliotis discus hannai, H. rufescens, H. rubra, and H. midae in both hemispheres of the world. There was clear genetic divergence in the mtDNA COI region between all pairs of the four species. Moreover, relationships among the abalone species were reflected in their geographical distributions and morphological characteristics. Therefore, RFLP analysis of the mtDNA COI region is a suitable genetic marker for the estimation of genetic divergence and relationships among abalone species. However, it is not effective for the evaluation of genetic differences within abalone species.

Analysis of Interspecific Association and Ordination on the Forest Vegetation of Mt. Odae (오대산 삼림식생의 종간친화력 및 서열분석)

  • 이호준;변두원;김창호
    • The Korean Journal of Ecology
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    • v.21 no.3
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    • pp.291-300
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    • 1998
  • The forest vegetation of Mt. Odae based on the interspecific relationship was classified into 4 groups : Quercus mongolica, Pinus densiflora, Quercus variabilis and Patrinia saniculaefolia. Thirty-one species of Quercus mongolica group including Quercus mongolica and Acer mone, 12 species of Pinus densiflora group comprising Pinus densiflora and Spodiopogon sibiricus, 6 species of Quercus variabilis group and 4 species of Patrinia saniculaefolia were positively correlated. in the results of species ordination by principal component analysis, 7 clusters by the humidity and acidity of soil, 4 clusters by the humidity and light intensity and 7 clusters by the acidity and light intensity were formed. The plot ordination showed that the distribution of species based on the humidity, soil acidity and total organic matters was in the order of Pinus densiflora, Quercus variabilis and Quercus mongolica groups, and based on the light intensity was in the order of Quercus variabilis, Pinus densiflora and Quercus mongolica groups.

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A biota research and analysis for Close-to-nature stream restoration planning (자연형 하천복원계획 수립을 위한 생물상 조사 및 분석)

  • SaGong, Jung-Hee;Ryu, Yeon-Su;Ra, Jung-Hwa
    • Current Research on Agriculture and Life Sciences
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    • v.24
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    • pp.37-42
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    • 2006
  • The purpose of this study was a biota research and analysis for Close-to-nature stream restoration planning of Shinchun. The summary of this study is as follows; 1) The vascular plants in research area recorded of 45 species and insect fauna recorded of 34 species of 8 orders. As a result of table of community classification, the communities were two group; Quercus variabilis community(I), Pinus densiflora-Quercus variabilis-Quercus dentata community(II). 2) As a result of analysis on correlation of tree species, the level of significance in positive correlation between Quercus dentata and Corylus heterophyll aindicated 1% and between Pinus densiflora and Lespedeza bicolor also indicated 1%. 3) As a result of DBH analysis, it is expected that Quercus variabilis and Quercus dentata will dominateover other species in competition and its succession continuously maintains from now on in community I. In community II, it is assumed that there is a high possibility of changing into community of Quercus such as Quercus mongolica, Quercus dentata, and Quercus variabilis. 4) As a result of analysis on insect fauna, insect fauna consists of 94% of whole species as 32 species, 23 families, 8 orders. And 7 species, 7 families 4 orders was found in highly urbanized area, the vicinity of Sang-Dong bridge. 5) As mentioned above, Based on A biota fundamental research, Close-to-nature stream restoration planning were full of suggestions: i) Designating ecosystem preservation area, ii) Making Close-to-nature stream revetments, iii) Making pool-and-riffle, vi) Making decks for observation and walks for nature experience, v) Creating wetland biotope. Through these methods, it is necessary to promote bio-diversity and lead people to the space for eco-learning.

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Distribution and Characteristics of Native and Exotic Plants on Cut Slopes and Rest Areas along Korean Highway Lines

  • Kim, Kee-Dae
    • Journal of Environmental Science International
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    • v.16 no.5
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    • pp.549-559
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    • 2007
  • Vegetation surveys were performed at 45 plots along 10 highways cut slopes in South Korea. Total floral inventory, species richness and exotic plant percentage were obtained within each plot. Life history and life form of each species appeared were analyzed. Community types were classified using hierarchical cluster analysis and detrended correspondence analysis and non-metric multidimensional scaling were conducted from vegetation matrix. 292 species of vascular plants were discovered and the number of natives and exotics were 226 and 66, respectively. There were no significant differences of species richness and exotic plant percentage between cut slopes and rest areas. Hierarchical cluster analysis indicated five clear vegetation associations in cut slopes and rest areas. Detrended correspondence analysis indicated that species composition of total and native plants were similar along the highway cut slopes whereas exotic plants were distributed differentially along the highway cut slopes. in non-metric multidimensional scaling, the studied sites were more separated from each other on the basis of their species composition than the results of detrended correspondence analysis with respect to total, native and exotic plants. The both ordination represented that exotic plants have not been made uniform yet on cut slopes and rest areas by highway corridor in spite of diverse chronosequences after highway construction termination (1 to 22 years). This study showed that the distribution of species composition in exotic plants was different and localized on cut slopes and rest areas of highway in this representative peninsula area of North East Asia and the invasion of exotic plants can retard the process of plant species homogenization.

Interspecific Relationship of Polygonatum Species Collected from Gyeongnam Area Using Cluster Analysis (경남지역 둥굴레속의 Cluster 분석에 의한 종간 유연관계)

  • Shim, Jae-Suk;Park, Jeong-Min;Jeon, Byong-Sam;Kang, Jin-Ho
    • Korean Journal of Medicinal Crop Science
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    • v.13 no.1
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    • pp.30-34
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    • 2005
  • Polygonatum species are a useful medical crop in Korea but basic study in the species was not well conducted. The study was carried out to analyse genetic diversity and intraspecific relationship of 47 Polygonatum species collected from Gyeongnam province. Their analysis was done through principle component analysis and average linkage cluster analysis with their twelve morphological traits. The result of principle component analysis showed the Prin 1, Prin 2 and Prin 3 represented 79% of total variation. By the 0.7 average distance of the cluster analysis and the calculated Euclidian distance, the 47 collected species were grouped into five groups. Group I included 22 collected species representing P. ordoratum var. pluriflorum, group II did 5 ones representing P. involucratum, group III was divided into two subclasses, 2 species including P. inflatum and 7 species including P. thunbergii, group IV also consisted of 2 subclasses, a species similar to P. thunbergii and P.involucratum, respectively, and finally group V included 8 species representing P.lasianthum var. coreanum. meaning that the useful germplasms can be collected from relatively small area.

Analysis of Plant Species Community within Upland Wetlands at Mt. Ilgwang

  • Huh, Man-Kyu
    • Journal of Environmental Science International
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    • v.20 no.4
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    • pp.427-434
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    • 2011
  • This study characterized the full range of vegetation in a upland wetland (marshland) in Korea. Classified community types were used to describe vegetation at the marshland and adjacent areas. The communities contained 44 species of vascular plants and all species were identified into four plant community types. The Rhododendron yedoense f. poukhanense type and Lespedeza cyrtobotrya type had a high representation infacultative upland species (FU) and obligate upland species (OU), respectively. The monocot type was dominant in marshland by Miscanthuns saccharifloruc and contained 14 species. Together the three areas contained four species, with the strongest indicator species being Ranunculus acris var. nipponicus, Rhododendron yedoense f. poukhanense, Hemerocallis fulva, and Miscanthuns sinensis var. purpurascens. Shannon-Weaver index of diversity also varied among the community types (F = 18.9, df = 2), with the types FU having significantly higher value (3.467) than the others (1.125 for type FW and 1.239 for type OU).

Species composition and cluster analysis of the communities caught by dredge in relation to tooth spacing and mesh size in the coastal waters of Gangneung, Korea (강릉 연안에서 형망의 갈퀴 간격 및 망목 크기에 따른 어획 생물의 종조성 및 군집 분석)

  • An, Heui-Chun;Bae, Jae-Hyun;Park, Jong-Myung;Park, Chang-Doo;Hong, Sung-Eic
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.50 no.4
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    • pp.530-541
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    • 2014
  • The dredge gear is dragged along the bottom of the sea to catch targeted edible bottom dwelling species. Species composition and ecological index of the catches of dredge were estimated around Gangneung coastal fishing ground by dredge with different mesh size and tooth space from July to December 2013. Eight different types of dredge including four different tooth space (24.7 mm, 29.9 mm, 34.9 mm, 40.1 mm) and four different mesh size(15.5 mm, 32.7 mm, 51.1 mm, 60.0 mm) were used in the experiment. During the experiment, total catches were collected 31 species as sipunculida 1 species, mollusca 13 species, annelida 3 species, arthropoda 8 species, echinodermata 4 species and others 2 species. The dominant genus were mollusca and echinodermata while the dominant species were Megangulus venulosus, Pseudocardium sachalinensis, Schaphechinus brevis. The richness index was ranged 1.29-1.72, evenness index was 0.6-0.65 and diversity index was 1.65-1.83 according to the tooth space and mesh size of dredge. Richness index, diversity index were high at tooth space 34.9 mm dredge and ecological index showed decreasing tendency with the increasing of mesh size of dredge. Cluster and MDS analysis, based on a Bray-Curtis and similarity matrix of fourth root transformed data of number of species and wet weight, showed division into four different groups as four different tooth space (Group A), four different mesh size Group B (51.1 mm, 60.0 mm), Group C (32.7 mm) and Group D (15.5 mm).