• Earthquakes and Structures
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• v.24 no.4
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• pp.289-301
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• 2023

Developing a competent soil-bridge interaction model for the seismic analysis of piled foundation bridges is of utmost importance for investigating the seismic response and assessing fragility of these lifeline structures. To this end, ground motion histories are deemed necessary at various depths along the piles supporting the bridge. This may be effectively accomplished through time history analysis of a free-field standalone soil column extending from bedrock level to ground surface subjected to an input bedrock motion at its base. A one-dimensional site/ground response analysis (vide one-directional shear wave propagation through the soil column) is hence conducted in the present research accounting for the nonlinear hysteretic behavior of the soil stratum encompassing the bridge piled foundation. Two homogeneous soil profiles atop of bedrock have been considered for comparison purposes, namely, loose and dense sand. Analysis of the standalone soil column has been performed under a set of ten selected actual bedrock ground motions adopting a nonlinear time domain approach in an incremental dynamic analysis framework. Amplified retrieved PGA and maximum soil shear strains have been generally observed at various depths of the soil column when moving away from bedrock towards ground surface especially at large hazards associated with high (input) PGA values assigned at bedrock. This has been accompanied, however, by some attenuation of the amplified PGA values at shallower depths and at ground surface especially for the loose sand soil and particularly for cases with higher seismic hazards associated with large scaling factors of bedrock records.

• Journal of Soil and Groundwater Environment
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• v.11 no.5
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• pp.43-50
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• 2006

Bioreporter bacteria, such as recombinant bioluminescent bacteria, have been used for the detection of specific compounds in complex environmental media. In this study, optimum conditions for the preparation and application of deep-freezed and Iyophilized recombinant bioluminescent strain KG1206 were investigated for the future application on contaminated environmental sites. Genetically engineered microorganism, Pseudomonas putida mt-2 KG1206, contains TOL plasmid and the plasmid inserted $P_{m}$, promoter on the upper part of lux gone in vector pUCD615, and m-toluate and benzoate are considered direct inducers for bioluminescence. Optimum conditions determined for the preparation and application of the deep-freezed and lyophilized strain were followings: cryoprotective agent (24% sucrose), lyophilization time (12 hrs), strain concentration ($OD_{600}=0.6$), reconstitution for freezed strain (quick reconstitution at $35^{\circ}C$), reconstitution for lyophilized strain ($3{\sim}6$ hrs exposure on LB medium), carrying conditions (keep at $20^{\circ}C$ after reconstitution). These results demonstrate the feasibility of deep-freezed or lyophilized state of genetically engineered bioluminescent strain for environmental usage.

• Korean Journal of Microbiology
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• v.54 no.3
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• pp.289-292
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• 2018

Using pyrene as the enrichment nutrient, a bacterial strain 10PY1A, was isolated by enrichment culture from oil-contaminated sea sand of Arabian Gulf in Saudi Arabia, and this strain belongs to the species Idiomarina piscisalsi, based on 16S RNA gene sequence analysis. The genome of I. piscisalsi strain 10PY1A contains 2,346 protein-coding sequences and an average GC content of 47.4% in its chromosome (2.59 Mbp). Genes encoding proteins related to the degradation of pyrene were existed in the strain 10PY1A genome, indicating that this strain can be used to degrade polycyclic aromatic hydrocarbons in oil-contaminated marine flora and soil.

• Proceedings of the Korean Geotechical Society Conference
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• 2000.03b
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• pp.183-190
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• 2000

Effective range of Hydraulic Hammer Compaction was studied by numerical analysis instead of empirical method. Numerical analyses were carried out with commercial FEM code, ABAQUS, and verified by comparing the numerical results with field tests of Hydraulic Hammer Compaction. Most of material properties were evaluated by data from laboratory and in-situ tests. Vertical effective range was estimated by distribution curve of plastic strain energy dissipated through soil layers under dynamic load and these results were in good agreement with field tests. Based on verification, the effects of governing properties of Hydraulic Hammer Compaction such as number of hit can be determined by numerical analyses. In addition, vertical effective range can also be determined by Menard's empirical equation using the external work at converging time of plastic strain energy in numerical analysis. This implies that the minimum energy of Hydraulic Hammer Compaction for improvement can be determined by Menard's equation.

• Microbiology and Biotechnology Letters
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• v.21 no.4
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• pp.322-328
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• 1993

During the screening of antifungal compounds from microbial secondary metabolites to control phytophthora blight of red pepper caused by Phytophthora capsici, a soil isolate, strain 38D10 was selected. Based on taxonomic studies, this strain was identified as Streptomyces neyagawaensis. The antifungal compound was purified from culture broth by HP-20 column chromatography, ethyl acetate extraction, silica gel column chromatography, HPLC and identified as concanamycin B by UV. $^1H$-NMR, $^{13}C$-NMR, SIMS analysis. Concanamycin B has strong antifungal activity against some phytopathogenic fungi but not antivacterial activity and preventive value were 50% and 100% at 125ppm and 250ppm in pot assay.

• Journal of Microbiology
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• v.40 no.4
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• pp.289-294
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• 2002

The fungal strain SW-3 having antimicrobial activity was isolated from soil of crucified plants in Pocheon, Kyungki-Do, Korea. Strain SW-3 was identified as Alternaria brassicicola by its morphological characteristics, and confirmed by the analysis of the 18S gene and ITS regions of rDNA. The fungus showed a similarity of 99% with Alternaria brassicicola in the 18S rDNA sequence analysis. A. brassicicola has been reported to produce an antitumor compound, called depudecin. We found that strain SW-3 produced antimicrobial metabolites, in addition to depudecin, during sporulation under different growth conditions. The metabolite of the isolated fungus was found to have strong antifungal activity against Microsporium canis and Trichophyton rubrum, and antibacterial activity against Staphylococcus aureus and Pseudomonas aerogenes. The amount and kind of metabolites produced by the isolate were affected by growth conditions such as nutrients and growth periods.

• Microbiology and Biotechnology Letters
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• v.23 no.1
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• pp.81-86
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• 1995

A Streptomyces strain YS-943, which produced amino acid antimetabolite, was isolated from soil. During the course of screening for new amino acid antimetabolites from the culture broth of Actinomycetes, we found that the strain produced a substance active against Gram-positive bacteria and its activity was reversed by L-methionine and L-histidine on the synthetic minimal agar medium in the culture broth.The morphological and cultural characteristics serve to identify the producing organism strain YS-943 as the genus Streptomyces. Fermentation was carried out in the synthetic medium at 28$\CIRC$C for 48 hours. The fermentation yield reached about 12 mg per liter of the broth. The YS-943 substance was obtained as white powder, mp 194$\CIRC$C and has the molecular formular of C$_{4}$H$_{8}$N$_{2}$O$_{4}$. Its structure was determined to be o-carbamyl-D-serine by spectroscopic data. It is active against some Gram-positive bacteria and reversed by L-methionine and L-histidine.

• Journal of Applied Biological Chemistry
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• v.48 no.4
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• pp.222-225
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• 2005

Strains showing antifungal activity against Cryphonectria parasitica were isolated from coast soil of Taean , Korea. Of 152 strains isolated, 6 strains showed antifungal activity in vitro against C. parasitica. Ta24 strain showed highest activity with 1.6 cm clean inhibition zone. For strain identification, the morphological characteristic and 16S rDNA sequences were determined. Ta24 strain showed 99% homology with Streptomyces sampsonii and was identified as Streptomyces sp.

• Microbiology and Biotechnology Letters
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• v.17 no.2
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• pp.109-114
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• 1989

Seventeen bacterial strains producing an extracellular soybean milk clotting enzyme were Isolated from 150 soil samples, and identified as Bacillus cereus(8 strains), Bacillus pumilus(8 strains) and Bacillus licheniformis (1 strain). Among them, Bacillus pumilus strain 118 and Bacillus licheniformis strain 192 showed relatively high soybean milk clotting activity. The coagulability of enzymes from these strains decreased as the pH of soybean milk was increased from 6.0 to 7.0. The optimum temperature for soybean milk clotting activity was $65^{\circ}C$.

• Journal of Industrial Technology
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• v.7
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• pp.59-68
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• 1987

In order to obtain a strain of producing lipase which has resistance against alkaline and detergent, a screening test was carried out. Among 500 strains isolated from soil samples, the strain J-19 was selected for this study. The composition of the optimum medium for the highest lipase production was 2.0% glycerin, 1.0% corn steep liquor, 2.0% yeast extract, 0.1% $MgSO_4$ $7H_2O$, 0.2% $K_2HPO_4$, 1.5% soybean oil and 0.1% LAS(linear alkylbenzene sulfonate) with initial pH value of 10.0 and 3-day cultivation at $25^{\circ}C$. The lipase activity of the strain J-19 under optimal condition was 3.3. units/ml, which was increased about 1.3-fold than that of basal medium.