• Korean Journal Plant Pathology
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• v.14 no.6
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• pp.606-611
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• 1998

An antagonistic bacterium, Pseudomonas flurorescens MC07 inhibited the mycelial growth of Rhizoctonia solani, Pythium ultimum, Fusarium oxysporum, and Phytophthora capsici in on potato dextrose agan (PDA) and other media. The strain MC07 conlonizes various plant roots and possesses antifungal activity. To determine the role of antifungal activity of the bacterium in disease suppression, a mutant Okm3-4 which lost its activity was isolated after screening 2,500 colonies generated by Omegon-Km insertions. The mutant Okm3-4 showed diminished growth inhibition of R. solani, P. ultimum, F. oxysporum, and Ph. capsici in vitro and had reduced suppressive effects on sesame damping.-off compared to the parental strain. In soils, accumulation of the pathogens by continuous cropping, 90% of sesame plants were killed by natural infection of damping-off whereas, only 29% of plants grown from seeds treated with MC07 were killed. On the other hand, 85% of plants died when sesame seeds were treated with the Okm3-4 cells. This indicated that antifungal activity of MC07 in vitro is directly responsible for the suppression of damping-off disease. Emergence rates of sesame seeds in pots containing diseased soil were 33%. However, MC07 treatments on seeds significantly improved emergence rates, which has similar effects of Benomyl treatment. The mutant Okm3-4 exhibited 53% of emergence rate. This indicated that antifungal activity of MC07 also affects the emergence rate of sesame seeds.

• The Plant Pathology Journal
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• v.32 no.6
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• pp.584-588
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• 2016

Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample. The isolated phage PK16 had an icosahedral head of $100{\pm}5nm$ and tail of $200{\pm}5nm$, indicating that it belonged to the family Myoviridae. Analysis of the complete linear dsDNA genome revealed a 158,127-bp genome with G + C content of 39.9% comprising 235 open reading frames as well as 19 tRNA genes (including 1 pseudogene). Blastp analysis showed that the proteins encoded by the PK16 genome had the closest hits to proteins of seven different bacteriophages. A neighbor-joining phylogenetic tree based on the major capsid protein showed a robust clustering of phage PK16 with phage JBP901 and BCP8-2 isolated from Korean fermented food.

• Journal of Applied Biological Chemistry
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• v.58 no.3
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• pp.247-251
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• 2015

In this study, a keratin-degrading bacterium was isolated from soil contaminated with feather waste. The isolated strain was identified as Chryseobacterium sp. P1-3 on the basis of the 16S rRNA gene sequence alignment. Chryseobacterium sp. P1-3 is currently used in various biotechnological applications (e.g., in the hydrolysis of poultry feathers). It hydrolyzed the feather meal within 2 days and possesses a high level of keratinase activity (98 U/mL). The keratinase, partially purified from this strain, prefers casein as a substrate and shows optimal activity at a temperature of $30^{\circ}C$ and at a pH of 8.0.

• Biotechnology and Bioprocess Engineering:BBE
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• v.7 no.2
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• pp.105-111
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• 2002

The biological removal of 2,4,6-trinitrotoluene (TNT) was studied in a bench-scale bioreactor using a bacterial culture of strain OK-5 originally Isolated from soil samples contaminated with TNT. The TNT was completely removed within 4 days of incubation in a 2.5 L bench-scale bioreactor containing a newly developed medium. The TNT was catabolized in the presence of different supplemented carbons. Only minimal growth was observed in the killed controls and cultures that only received TNT during the incubation period. This catabolism was affected by the concentration ratio of the substrate to the biomass. The addition of various nitrogen sources produced a delayed effect for the TNT degradation. Tween 80 enhanced the degradation of TNT under these conditions. Two metabolic intermediates were detected and identified as 2-amino-4, 6-dinitrotoluene and 4-amino-2, 6-dinitrotoluene based on HPLC and GC-MS analyses, respectively. Strain OK-5 was characterized using the BIOLOG system and fatty acid profile produced by a microbial identification system equipped with a Hewlett Packard HP 5890 II gas chromatograph. As such, the bacterium was identified as a Stenotrophomonas species and designated as Stenotrophomonas sp. OK-5.

• Geomechanics and Engineering
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• v.1 no.3
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• pp.241-257
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• 2009

The one-dimensional compressibility of sand is an important property for the estimation of settlement or deformation of sand deposits. The $K_0$ value of sand is also an important design parameter. Experimental results are presented in this paper to study the compressibility of sand in $K_0$ consolidation tests. The $K_0$ consolidation tests were carried out using a triaxial cell and a plane-strain apparatus. Specimens prepared using both the moist tamping and the water sedimentation methods were tested. The testing data demonstrate that the type of testing apparatus does not affect the $K_0$ measurement if proper boundary conditions are imposed in the tests. The data also show that the compressibility and the $K_0$ value of loose sand specimens prepared using the moist tamping method are very sensitive to the variation of void ratio. The $K_0$ values measured from these tests do not agree with the $K_0$ values calculated from Jaky's equation. The compressibility and $K_0$ values of sand obtained from tests on specimens prepared using different preparation methods are different which may reflect the influence of soil fabrics or structures on the one dimensional compression behavior of sand.

• Mycobiology
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• v.44 no.1
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• pp.29-37
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• 2016

During a biodiversity survey of undiscovered taxa in Korea, two zygomycetous fungal strains were isolated. The first strain, EML-FSDY6-1 was isolated from a soil sample collected at Dokdo Island in the East Sea of Korea in 2013, and the second strain, EML-DG-NH3-1 was isolated from a rat dung sample collected at Chonnam National University garden, Gwangju, Korea in 2014. Based on the morphological characteristics and phylogenetic analysis of the internal transcribed spacer, 18S and 28S rDNA, actin and translation elongation $factor-1{\alpha}$ genes. EML-FSDY6-1 and EML-DG-NH3-1 isolates were confirmed as zygomycete species, Absidia pseudocylindrospora and Absidia glauca, respectively. Neither species has previously been described in Korea.

• Korean Journal of Microbiology
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• v.33 no.3
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• pp.187-192
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• 1997

The strain producing biosurfactant was isolated from soil. The isolated strain was identified as the genus Tsukamurella through its morphological, cultural, physiological, menaquinone type, fatty acid composition characteristics. The highest biosurfactant production by Tsukamurella sp. 26A was observed after 4 days cultivation in the culture medium containing n-hexadecane 7%, $NaNO_{3}$ 0.2%, $K_2HPO_4$ 0.001%, $MgSO_{4}$ center dot $7H_{2}O$ 0.02%, $CaCl_2$ center dot $2H_{2}O$ 0.02%, yeast extract 0.02%(pH 6.8-7.0, 30^{\circ}C.$ The surface and interfacial tension of an aqueous solution reached 30 mNim and 1.5 mNim, respectively. The biosurfactant stabilized oil-in-water emulsion with a variety of hydrocarbons, edible oils and petroleum oils.

• Microbiology and Biotechnology Letters
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• v.21 no.1
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• pp.1-5
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• 1993

The strain which produced glutathione was isolated from soil samples. The isolated strain was identified as the genus Candida through its morphological. cultural and physiological characteristics. The highest production of glutathione by Candida sp. was obtained after cultivation with shaking for 36 hours in the culture medium containing fructose 1.0%, yeast extract 4.0%. NaCI 0.04%, thiamine-HCI $5{\mu}g$/ml, and L-cysteine 0.04%. The optimal pH and temperature for the glutathione production were pH 6.0 and $25^{\circ}C$, respectively. The glutathione production by Candida sp. under the optimal culture condition was $92{\mu}g/ml$.

• Microbiology and Biotechnology Letters
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• v.21 no.1
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• pp.6-12
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• 1993

Among 294 Actinomycetes isolated from soil, a strain that had appeared to produce the highest level of chitinase selected for further studies. The selected strain was identified as a Streptomyces lydicus based on the data obtained from the morphological, biochemical and cultural experiments. The cultural conditions for the enzyme production were also examined, and the results obtained were as follows: the maximal enzyme production was attained when the cells were cultured at $30^{\circ}C$ for 6 days in the medium supplemented with 2% of colloidal chitin. The optimum initial pH of the medium was observed to be 8. It was also found that the most effective carbon and nitrogen sources were soluble starch and ammonium oxalate, respectively.

• Geotechnical Engineering
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• v.2 no.1
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• pp.55-66
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• 1986

Considering the effects of confining pressure, initial shear stress, cyclic stress ratio and number of loading cycles, cyclic triaxial tests are carried out to clarify the soil dynamic properties such as shear modulus and value of material damping of clay under undrained cyclic loading conditions. The results show that no obvious dependency on initial shear stress and effective confining stress are recognized in the shear modulus and damping ratio plotted versus strain. However, the shear modulus decreases and the damping ratio increases with increasing axial strain. When compared with others, it is also revealed that the shear moduli are distributed within the range curves obtained using empirical equations derived by Marcuson et al. (3) and Kokusho et al. (4), and damping ratios are distributed between the curves obtained by Kokusho et al. (4) and Ishihara et al. (9).