• 환경위생공학
• /
• 제14권2호
• /
• pp.32-39
• /
• 1999

The following is experimental result of selecting soil bacteria showing toxicity against Root-knot nematode (Meloidogyne hapla). Out of 286 strains isolated from soil, one(NC67) showing toxicity against M.hapla is selected The selected strain(NC67) is identified of B. thuringiensis subsp. indiana. It proved out that the toxic maerial against M. hapla produce by NC67 strain is an exotoxin. The result of examining the existence of the extercellular toxicity product by the toxic strain(NC67) by usign activated carbon column chromatography, Dowex 50W column chromatography and TLC of silical gel etc. proved out that it is a single material.

• 한국지하수토양환경학회:학술대회논문집
• /
• 한국지하수토양환경학회 2004년도 임시총회 및 추계학술발표회
• /
• pp.369-372
• /
• 2004

This study presents the hydrogeochmical investigation to know the effect of geology and sources for water quality in small potable water supply system at rural area. The results of water quality in Geumsan area showed the 3.2% of water samples exceeded the limit of drinking water standard by bacteria. The hydrochemical investigation results indicated the high EC, Ca and HCO$_3$ in surface water and metasedimentary rocks and this is caused by the dissolution of calc-slicate minerals of metasedimentary rocks.

• 한국환경농학회지
• /
• 제30권4호
• /
• pp.367-376
• /
• 2011

논 토양의 미생물 생태 다양성을 조사하기 위한 효과적인 방법으로 qRT-PCR을 적용하고자 본 연구를 수행하였다. 논 토양 미생물의 gDNA를 분리하기 위하여 Mo Bio kit를 사용한 효과적이고 안정적인 gDNA 분리 방법을 확립하였다. 논 토양 미생물 다양성을 qRT-PCR로 검출하기 위하여 bacteria를 세분한 ${\alpha}$-Proteobacteria, ${\beta}$-Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes 다섯 가지 문과 전체 bacteria, 전체 fungi를 구분할 수 있는 특이 primer set을 선정하여 다양한 조건의 시험을 통하여 최종 조건을 확립하였으며 재현성 실험을 통하여 방법의 유의성을 검증하였다.

• 한국토양비료학회지
• /
• 제42권2호
• /
• pp.139-143
• /
• 2009

인지질 지방산을 분석하여 특정 미생물군의 수직적 분포와 토층간 미생물 군집 패턴을 조사하였다. 경북 농업기술원에 위치하고, 질소, 인산, 가리의 화학비료만 장기 연용한 논과 밭 포장에서 15 cm 깊이까지 토양을 채취하였다. 인지질 지표 지방산을 주요인 분석으로 분석하여 토양 미생물 군집을 분석한 결과 논과 밭 토양의 미생물 군집은 뚜렷하게 구분되었으며, 토층간 차이보다 논과 밭의 차이가 더 컸다. 논보다 밭은 토층이 깊어짐에 따라 미생물 군집이 급격하게 변하였는데, 미생물 군집 측면에서 밭보다 논의 표층이 더 두껍다고 볼 수 있다. cyclopropyl/monoenoic precursor 비율과 전체 포화지방산/전체 불포화 지방산 비율은 토심이 깊어짐에 따라 증가하였는데, 이는 토심이 깊어질수록 탄소원과 통기가 부족하기 때문에 일어나는 현상으로 보인다. 대체로 표토는 그램음성균, 곰팡이 등의 상대적 비율이 높고 토심이 깊어질수록 세균과 방선균의 상대적 비율이 높아졌다.

• 미생물학회지
• /
• 제36권4호
• /
• pp.299-305
• /
• 2000

생분해성 플라스틱으로 현재 상업화에 가장 근접해 있는 poly-3-hydroxybutyrate (PHB), $Sky-Green^R$(SG) 및 $Mater-Bi^R$(MB)를 활성오니토 및 경작토에 매립하여 PHB 분해세균 3주, SG 분해세균 3주 및 MB 분해세균 1주를 분리하였다. PHB 분해세균은 Flavimonas oryzihabitans, Corynebacterium pseudodiphtheriticum 및 Micrococcus diversus로, SG 분해세균은 Pseudomonas vesicuraris, Pasteurlla multocida 및 Flavobacterium odoratum으로, MB 분해세균은 Pseudomonas vesicuraris로 동정되었다. 각 플라스틱 film을 함유한 무기염 액체배지에서 28일 간의 생분해성 실험 결과 평균 중량감소는 PHB와 SG은 각각 44~69% 및 25~32%, MB는 29%를 나타내어 PHB의 생분해성이 가장 우수하였다. 각 플라스틱 film의 활성오니토 매립 전과 후의 표면 변화를 조사한 결과 미생물이 다공성의 film 표면에 많은 colony를 형성하는 것이 SEM으로 관찰되었다. PHB, SG 및 MB의 무생물적 분해와 F. oryzihabitans에 의한 미생물학적 생분해를 TOC와 pH 변화로 측정하여 비교 분석하였을 때, SG과 MB는 분해 정도가 서로 유사하였으나 PHB는 SG는 MB에 비하여 dir 3배 더 빠르게 무생물적 분해가 일어났다. Yeast extract를 포함한 배지에서 PHB, GS 및 MB의 분해는 yeast extract를 포함하지 않은 배지에서 보다 훨씬 빠르게 안정되었으며, 두 경우 모두 PHB의 분해는 SG 및 MB에 비하여 더 빠르게 일어졌다.

• 미생물학회지
• /
• 제42권2호
• /
• pp.116-124
• /
• 2006

직접 생균수 측정법(DVC)과 평판계수법(PC)을 이용하여 소나무림과 상수리나무림 토양에 분포하는 세균군집의 정량적 평가를 실시한 결과, DVC법에 의해 계수된 생균수에 대해 평판법에 의해 계수된 생균수 1% 미만으로 나타났다. 이상의 결과로부터 산림토양 내에 평판배양법으로는 배양이 곤란한 난배양성(viable but non culturable; VBNC) 세균이 99% 이상 존재해 있는 것으로 판단되었다. 이들 VBNC 세균의 군집구조 해석을 위하여 토양으로부터 직접 DNA를 추출하고 16S rDNA-ARDRA 분석을 통하여 계통학적 특성을 검토하였다. 소나무림과 삼수리나무림 토양으로부터 각각 111 clones, 108 clones을 획득하고 HaeIII 절편양상에 따라 30 groups과 26 groups의 ARDRA group으로 분류하였다. 각 ARDRA group으로부터 대표 clone을 선발하여 16S rDNA 염기서 열을 결정한 결과, 소나무림 토양의 경우 ${\alpha}$-proteobacteria (12 clones), ${\gamma}$-proteobacteria (3 clones), ${\delta}$-proteobncteria (1clone), Flexibacter/Cytophaga (1 clone), Actinobacteria (4 clones), Acidobacteria (4 clones), 그리고 Planctomycetes (5 clone)의 7개의 계통군이 확인되었으며, 상수리나무림 토양에서는 ${\alpha}$-proteobacteria (4 clones), ${\gamma}$-proteobacteria (2 clones), Actinobacteria (10 clones), Acidobacteria (8 clones), Planctomycetes (1 clone), 그리고 Verrucomicrobia (1clone)로 6개의 다양한 계통군이 확인되었다. 이상, 소나무림과 상수리나무림 토양 내에 존재하는 99% 이상의 VBNC 세균군집의 대부분은 미배양성 혹은 미동정균으로 계통학적으로 다양한 미지의 미생물로 구성되어 있음이 확인되었다.

• Journal of Microbiology and Biotechnology
• /
• 제30권11호
• /
• pp.1688-1696
• /
• 2020

Soil physical and chemical characteristics, soil potential denitrification rates (PDR), community composition and nirK-, nirS- and nosZ-encoding denitrifiers were studied by using MiSeq sequencing, quantitative polymerase chain reaction (qPCR), and terminal restriction fragment polymorphism (T-RFLP) technologies base on short-term (5-year) tillage field experiment. The experiment included four tillage treatments: conventional tillage with crop residue incorporation (CT), rotary tillage with crop residue incorporation (RT), no-tillage with crop residue retention (NT), and rotary tillage with crop residue removed as control (RTO). The results indicated that soil organic carbon, total nitrogen and NH₄⁺-N contents were increased with CT, RT and NT treatments. Compared with RTO treatment, the copies number of nirK, nirS and nosZ in paddy soil with CT, RT and NT treatments were significantly increased. The principal coordinate analysis indicated that tillage management and crop residue returning management were the most and the second important factors for the change of denitrifying bacteria community, respectively. Meanwhile, this study indicated that activity and community composition of denitrifiers with CT, RT and NT treatments were increased, compared with RTO treatment. This result showed that nirK, nirS and nosZ-type denitrifiers communities in crop residue applied soil had higher species diversity compared with crop residue removed soil, and denitrifying bacteria community composition were dominated by Gammaproteobacteria, Deltaproteobacteria, and Betaproteobacteria. Therefore, it is a beneficial practice to increase soil PDR level, abundance and community composition of nitrogen-functional soil microorganism by combined application of tillage with crop residue management.

• 환경생물
• /
• 제29권4호
• /
• pp.265-273
• /
• 2011

Bacterial diversity based on the denaturing gradient gel electrophoresis (DGGE) analysis of PCR-amplified 16S rRNA gene sequences was determined for soil samples from two abandoned mine sites and the corresponding enrichment cultures using soil sample as key inoculum. Sequencing analysis of DGGE bands obtained from both the soil samples matched mostly with sequences of uncultured and newly described organisms, or organisms recently associated with the acid mine drainage environment. However, the enrichment of soil samples in ferrous sulfate and elemental sulfur media yielded sequences that were consistent with well-known iron- and sulfur-oxidizing acidophilic bacteria. Analysis of enrichment cultures of soil samples from Dalsung mine revealed abundant ${\gamma}$-$Proteobacteria$, whereas that of Gubong mine sample displayed acidophilic groups of ${\gamma}$-$Proteobacteria$, ${\alpha}$-$Proteobacteria$, $Actinobacteria$ and $Firmicutes$. Chemical elemental analysis of the mine samples indicated that the Dalsung site contained more iron and sulfate along with other toxic components as compared with those of the Gubong site. Biogeochemistry was believed to be the primary control on the acidophilic bacterial group in the enrichment samples.

• Journal of Microbiology and Biotechnology
• /
• 제13권2호
• /
• pp.251-255
• /
• 2003

The bacterial compositions of seven hot-pepper sown soil were compared in this study. From the 624 isolates, 95 species and 49 genera were identified by fatty acid methyl ester analysis (FAME). The FAME results of seven soil showed two distinct clusters for aerobic and Gram-negative bacteria in the high productivity and monoculture soil samples. While Arthrobacter ($17\%$), Kocuria ($11\%$), Pseudomonas ($8\%$), and Bacillus ($8\%$) were predominant among bacteria which were cultured on heterotrophic (YG) agar medium, Pseudomonas ($56\%$), Stenotrophomonas ($16\%$), and Burkholderia ($8\%$) were predominant on crystal violet agar medium. Shannon Weaver indices (H) indicated that colonies obtained from heterotrophic agar medium (3.1) were found to be more diverse than those obtained from the crystal violet media (1.9). The results suggest that FAME analysis may be a potential indicator for of soil quality.

• Journal of Microbiology and Biotechnology
• /
• 제31권7호
• /
• pp.978-989
• /
• 2021

Allyl isothiocyanate (AITC), as a fumigant, plays an important role in soil control of nematodes, soil-borne pathogens, and weeds, but its effects on soil microorganisms are unclear. In this study, the effects of AITC on microbial diversity and community composition of Capsicum annuum L. soil were investigated through Illumina high-throughput sequencing. The results showed that microbial diversity and community structure were significantly influenced by AITC. AITC reduced the diversity of soil bacteria, stimulated the diversity of the soil fungal community, and significantly changed the structure of fungal community. AITC decreased the relative abundance of dominant bacteria Planctomycetes, Acinetobacter, Pseudodeganella, and RB41, but increased that of Lysobacter, Sphingomonas, Pseudomonas, Luteimonas, Pseudoxanthomonas, and Bacillus at the genera level, while for fungi, Trichoderma, Neurospora, and Lasiodiplodia decreased significantly and Aspergillus, Cladosporium, Fusarium, Penicillium, and Saccharomyces were higher than the control. The correlation analysis suggested cellulase had a significant correlation with fungal operational taxonomic units and there was a significant correlation between cellulase and fungal diversity, while catalase, cellulose, sucrase, and urease were the major contributors in the shift of the community structure. Our results will provide useful information for the use of AITC in the assessment of environmental and ecological security.