• Earthquakes and Structures
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• v.22 no.3
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• pp.263-275
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• 2022

Structural collapses can occur as a result of a dynamic amplification of either, the building's seismic response or the ground shaking by local site effects; one of the reasons is a resonance effect due to the proximity of the structural elastic fundamental period TE and the soil fundamental period TS. We evaluate the vulnerability to resonance effects in Guadalajara, México, in a three-step schema: 1) we define structural systems in the building environment of western Guadalajara, in terms of their construction materials and structural components; 2) we estimate TE with different equations, to obtain a representative value in elastic conditions for each structural system; and, 3) we evaluate the resonance vulnerability by the analysis of the ratio between TE and TS. We observe that the larger the soil fundamental period, the higher the resonance vulnerability for buildings with height between 17 and 39 m. For the sites with a low TS, the most vulnerable buildings will be those with a height between 2 and 9 m. These results can be a helpful tool for disaster prevention, by avoiding the construction of buildings with certain heights and structural characteristics that would result in a dangerous proximity between TE and TS.

• Proceedings of the KSR Conference
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• 2011.10a
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• pp.3201-3207
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• 2011

This paper reviewed wave propagation of train vibration based on the study of high speed railway soft ground section with pile slab construction. In a filed of railway, concrete track has been adapted in a railway construction. And in order to maintain its track, soil improving method was required to control residual settlement. Within many soft ground settlement prevention techniques, pile slab method has an effect of minimizing residual settlement of soft ground. This is possible using support embankment load method by construct pile slab or cap the upper soft ground. This paper reviewed vibration wave characteristic of soft ground section with pile slab using numerical analysis application through finite element analysis. Pile slab method is established between high stiffened soft ground and embankment this creates a possibility of vibration block or slab amplification. Thus analyzed of wave propagation was done with roadbed and structure property to confirm application performance of pile slab method of high speed railway structure.

• Proceedings of the Earthquake Engineering Society of Korea Conference
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• 2002.03a
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• pp.341-348
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• 2002

This manuscript introduces the Building Standard Law of Japan revised at 2000, June. Recently, The Building Standard Law of Japan was revised into the performance-based design format following the trend of international. The structural performance was evaluated for two limiting states; serviceability and soundness limit state, and safety limit state. The design earthquake forces were determined on the basis of seismic activities of the construction site, taking into consideration (a)characteristics of focal mechanism, (b)amplification by local surfaces geology, and (c)soil-structure interaction, in addition to the properties of the planned building including scale, configuration, foundation system, and structural characteristics.

• Journal of Microbiology and Biotechnology
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• v.22 no.11
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• pp.1575-1579
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• 2012

Paenibacillus polymyxa is known to be a plant-growth-promoting rhizobacterium. The present study describes a quantitative polymerase chain reaction (qPCR) assay for the specific detection and quantitation of P. polymyxa using a primer pair based on the sequence of a membrane-fusion protein for the amplification of a 268 bp DNA fragment. This study reports that the qPCR-based method is applicable for the rapid and sensitive detection of P. polymyxa and can be used as an alternative method for agricultural soil monitoring.

• Genomics & Informatics
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• v.11 no.3
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• pp.121-128
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• 2013

The introduction of metagenomics into the field of virology has facilitated the exploration of viral communities in various natural habitats. Understanding the viral ecology of a variety of sample types throughout the biosphere is important per se, but it also has potential applications in clinical and diagnostic virology. However, the procedures used by viral metagenomics may produce technical errors, such as amplification bias, while public viral databases are very limited, which may hamper the determination of the viral diversity in samples. This review considers the current state of viral metagenomics, based on examples from Korean viral metagenomic studies-i.e., rice paddy soil, fermented foods, human gut, seawater, and the near-surface atmosphere. Viral metagenomics has become widespread due to various methodological developments, and much attention has been focused on studies that consider the intrinsic role of viruses that interact with their hosts.

• Journal of Applied Biological Chemistry
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• v.42 no.2
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• pp.57-61
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• 1999

Seven numerically dominant 2-methyl-4-chlorophenoxyacetic acid (MCPA)-degrading bacteria were isolated from agricultural soils. The isolates utilized the herbicide MCPA as a sole carbon source, producing significant biomass in MCPA mineral medium. They exhibited diverse herbicide degradation capabilities, but most of them grew very slowly in mineral medium containing herbicide. The chromosomal DNA patterns of the isolates obtained by polymerase chain reaction amplification of repetitive extragenic palindromic sequences were distinct from each other. One isolate, SH3, which was identified as Sphingomonas species by fatty acid methyl ester analysis, was able to degrade 5 different phenoxyacetic acid herbicides within 4 days. This strain contains two plasmids, and the smaller one has a crucial role in herbicide degradation. MCPA treated into agricultural soils without indigenous MCPA-degraders persisted for a long time, but the application of the isolate SH3 resulted in rapid decline of MCPA concentration in the soil.

• Journal of Microbiology
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• v.43 no.6
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• pp.572-576
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• 2005

This study focused on detecting catabolic genes for polycyclic aromatic hydrocarbons (PAHs) distributed in the reed rhizosphere of Sunchon Bay, Korea. These marsh and mud environments were severely affected by human activities, including agriculture and fisheries. Our previous study on microbial roles in natural decontamination displayed the possibility that PAH-degrading bacteria, such as Achromobacter sp., Alcaligenes sp., Burkholderia sp. and Pseudomonas sp. play an important decontamination role in a reed rhizosphere. In order to gain further fundamental knowledge on the natural decontamination process, catabolic genes for PAH metabolism were investigated through PCR amplification of dioxygenase genes using soil genomic DNA and sequencing. Comparative analysis of predicted amino acid sequences from 50 randomly selected dioxygenase clones capable of hydroxylating inactivated aromatic nuclei indicated that these were divided into three groups, two of which might be originated from PAH-degrading bacteria. Amino acid sequences of each dioxygenase clone were a part of the genes encoding enzymes for initial catabolism of naphthalene, phenanthrene, or pyrene that might be originated from bacteria in the reed rhizosphere of Sunchon Bay.

• Journal of Ecology and Environment
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• v.35 no.1
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• pp.27-34
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• 2012

Typha angustifolia has ecological characteristics of clonal growth similar to Phragmites australis. The plant spreads byclonal growth and seed dispersal. In this study, for the three stands which have different settlement age at the Baksilji wetland in Korea, genetic diversity was estimated by random amplification of polymorphic DNA analysis to evaluate the change in genetic diversity of T. angustifolia during stand development in the same population. Stand (ST) 1 was the oldest and ST 4 was the youngest. ST 5 was in a small ditch out of the Baksilji. Although the ST 1, ST 2, and ST 3 did not differ significantly in vegetational or physical environment, the genetic diversity estimated according to Nei's gene diversity (h) and the Shannon index (i) increased in the order of ST 1 < ST 2 < ST 3 contrary to formative age. The genetic diversity of ST 4 was much higher than that of the other three stands. ST 4 has similar abiotic environmental conditions with slight T. angustifolia dominance, and seems to be in the early establishment stage. ST 5 differed from the other stands in vegetational and soil environments, which can result in stressful cattail conditions. Even though the ST 5 stand was not younger than the ST 4 stand, ST 5 showed the highest genetic diversity. Our results indicate that after early settlement of the T. angustifolia population, genetic diversity within the species decreased over time and that the decreasing pattern of genetic diversity within T. angustifolia stands is not likely to occur under stressful conditions.

• Journal of the Earthquake Engineering Society of Korea
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• v.8 no.3
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• pp.23-32
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• 2004

The local geologic and dynamic site characteristics, which include soil profiles, shear wave velocity profiles and depths to the bed rock were gathered from 148 sites all over the Korean peninsula and those values are compared to those in the western USA. Site response analyses were performed based on equivalent linear scheme using design rock-outcrop acceleration of 0.154g which corresponds to the collapse level of earthquake for seismic category I structure. The results show that the amplification factor based on Korean seismic design guideline underestimates the motion in short-period range and overestimates the motion in mid-period range. It is suggested that the existing Korean seismic guideline based on UBC is required to be modified considering dynamic site characteristics in Korea for the reliable estimation of site amplification.

• The Journal of Engineering Geology
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• v.32 no.1
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• pp.143-155
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• 2022

In this study, the response acceleration amplification according to different conditions was analyzed by changing the boundary condition of the soil called LSB (Laminar Shear Box), which is placed on a 1 g shaking table for earthquake simulation experiments. Experiments were carried out with different boundary conditions by fixing both sides of the LSB, and two samples were tested by installing an accelerometer at the same location. In addition, using DEEPSOIL v7 program, a one-dimensional ground response analysis was performed to compare and analyze with the free field condition. As a result, it was confirmed that the acceleration was amplified as it went from the lower layer to the upper layer, and as a result of comparing it with the ground response analysis, it was confirmed that it appeared similar to the analysis under the free field condition. As a result of the SA (Spectrum acceleration) analysis, a result similar to that of the ground response analysis was obtained, and in the case of fixing, it was confirmed that the PSA (Peak Spectral Acceleration) was further amplified.