• Title/Summary/Keyword: series model

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Dynamics of a Globular Protein and Its Hydration Water Studied by Neutron Scattering and MD Simulations

  • Kim, Chan-Soo;Chu, Xiang-Qiang;Lagi, Marco;Chen, Sow-Hsin;Lee, Kwang-Ryeol
    • Proceedings of the Korean Vacuum Society Conference
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    • 2011.02a
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    • pp.21-21
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    • 2011
  • A series of Quasi-Elastic Neutron Scattering (QENS) experiments helps us to understand the single-particle (hydrogen atom) dynamics of a globular protein and its hydration water and strong coupling between them. We also performed Molecular Dynamics (MD) simulations on a realistic model of the hydrated hen-egg Lysozyme powder having two proteins in the periodic box. We found the existence of a Fragile-to-Strong dynamic Crossover (FSC) phenomenon in hydration water around a protein occurring at TL=$225{\pm}5K$ by analyzing Intermediate Scattering Function (ISF). On lowering of the temperature toward FSC, the structure of hydration water makes a transition from predominantly the High Density Liquid (HDL) form, a more fluid state, to predominantly the Low Density Liquid (LDL) form, a less fluid state, derived from the existence of a liquid?liquid critical point at an elevated pressure. We showed experimentally and confirmed theoretically that this sudden switch in the mobility of the hydration water around a protein triggers the dynamic transition (so-called glass transition) of the protein, at a temperature TD=220 K. Mean Square Displacement (MSD) is the important factor to show that the FSC is the key to the strong coupling between a protein and its hydration water by suggesting TL${\fallingdotseq}$TD. MD simulations with TIP4P force field for water were performed to understand hydration level dependency of the FSC temperature. We added water molecules to increase hydration level of the protein hydration water, from 0.30, 0.45, 0.60 and 1.00 (1.00 is the bulk water). These confirm the existence of the FSC and the hydration level dependence of the FSC temperature: FSC temperature is decreased upon increasing hydration level. We compared the hydration water around Lysozyme, B-DNA and RNA. Similarity among those suggests that the FSC and this coupling be universal for globular proteins, biopolymers.

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Development of RESTful Web Service for Loading Data focusing on Daily Meteorological Data (데이터 로딩 자동화를 위한 RESTful 웹서비스 개발 - 일별 기상자료 처리를 중심으로 -)

  • Kim, Taegon;Lee, JeongJae;Nam, Won-Ho;Suh, Kyo
    • Journal of The Korean Society of Agricultural Engineers
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    • v.56 no.6
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    • pp.93-102
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    • 2014
  • Generally data loading is a laborous job to develop models. Meteorological data is basic input data for hydrological models, it is provided through websites of Korea Meteorological Administration (KMA). The website of KMA provides daily meteorological observation data with tabular format classified by years, items, stations. It is cumbersome to manipulate tabular format for model inputs such as time series and multi-item or multi-station data. The provider oriented services which broadcast restricted formed information have caused inconvenient processes. Tim O'Reilly introduces "Web 2.0" which focuses on providing a service based on data. The top ranked IT companies such as google, yahoo, daum, and naver provide customer oriented services with Open API (Application Programming Interface). A RESTful web service, typical implementation for Open API, consists URI request and HTTP response which are simple and light weight protocol than SOAP (Simple Object Access Protocol). The aim of this study is to develop a web-based service that helps loading data for human use instead of machine use. In this study, the developed RESTful web service provides Open API for manipulating meteorological data. The proposed Open API can easily access from spreadsheet programs, web browsers, and various programming environments.

Evaluation of GPM IMERG Applicability Using SPI based Satellite Precipitation (SPI를 활용한 GPM IMERG 자료의 적용성 평가)

  • Jang, Sangmin;Rhee, Jinyoung;Yoon, Sunkwon;Lee, Taehwa;Park, Kyungwon
    • Journal of The Korean Society of Agricultural Engineers
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    • v.59 no.3
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    • pp.29-39
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    • 2017
  • In this study, the GPM (Global Precipitation Mission) IMERG (Integrated Multi-satellitE retrievals for GPM) rainfall data was verified and evaluated using ground AWS (Automated Weather Station) and radar in order to investigate the availability of GPM IMERG rainfall data. The SPI (Standardized Precipitation Index) was calculated based on the GPM IMERG data and also compared with the results obtained from the ground observation data for the Hoengseong Dam and Yongdam Dam areas. For the radar data, 1.5 km CAPPI rainfall data with a resolution of 10 km and 30 minutes was generated by applying the Z-R relationship ($Z=200R^{1.6}$) and used for accuracy verification. In order to calculate the SPI, PERSIANN_CDR and TRMM 3B42 were used for the period prior to the GPM IMERG data availability range. As a result of latency verification, it was confirmed that the performance is relatively higher than that of the early run mode in the late run mode. The GPM IMERG rainfall data has a high accuracy for 20 mm/h or more rainfall as a result of the comparison with the ground rainfall data. The analysis of the time scale of the SPI based on GPM IMERG and changes in normal annual precipitation adequately showed the effect of short term rainfall cases on local drought relief. In addition, the correlation coefficient and the determination coefficient were 0.83, 0.914, 0.689 and 0.835, respectively, between the SPI based GPM IMERG and the ground observation data. Therefore, it can be used as a predictive factor through the time series prediction model. We confirmed the hydrological utilization and the possibility of real time drought monitoring using SPI based on GPM IMERG rainfall, even though results presented in this study were limited to some rainfall cases.

Investigation on the Design Wave Forces for Ear-do Ocean Research Station II: Fluid Force in the Breaking Wave Field (이어도 종합해양과학기지에 대한 설계파력의 검토 II: 쇄파역에서의 유체력)

  • 전인식;심재설;최성진
    • Journal of Korean Society of Coastal and Ocean Engineers
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    • v.12 no.4
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    • pp.168-180
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    • 2000
  • In the Part I, the three dimensional model testing with NNW deep water wave direction gave the results such that the occurrence of breaking waves over the peak of Ear-Do caused very small wave height at the structure position. But the measured wave forces were rather greater than the calculated forces based on deep water wave height. Furthermore, It was also perceived that the time series of the forces looked like corresponding to the case that waves were superimposed by an unidirectional current. In the present Part II, the current is presumed to be a flow secondly induced by breaking waves, and an extensive study to clarify the current in a quantitative sense is performed through numerical analysis and hydraulic experiment. The results showed that a strong circulation can surely occur in the vicinity of the structure due to radiation stress differentials given by the breaking waves. It was also recognized that the velocity of the induced current varied with the magnitude of energy dissipation rate introduced in the numerical analysis. The numerical analysis was tuned adjusting the dissipation rate so that the calculated wave field could closely match with the experimental results of Part I. The fluid force (in prototype) for the optimal match showed approximately 2.2% increased over the calculated value based on the deep water wave height (24.6m) whereas the force corresponding to the average of the experimental values showed the increase of about 13.0%.

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Participatory Design Process with Concept Generation Toolkits - A Case Study of Designing the Stroller and Its Renting System for Department Stores - (컨셉도출 툴킷을 활용한 참여적 디자인 프로세스 - 백화점 유모차 및 대여 시스템의 디자인 사례연구 -)

  • 성기원;신현경;강학화;남택진
    • Archives of design research
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    • v.16 no.1
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    • pp.73-82
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    • 2003
  • This paper presents a case study of designing the stroller and its renting system for department stores in order to verify the feasibility of the participatory design approach, in particular the concept generation toolkits and the participatory design workshops, in the product development process. As the concept generation toolkits to draw active user participation, a Velcro Covered stroller model and a Block Layout System were developed and used in a series of the participatory design workshops. The results suggest that the participatory design approach provides better understanding of what the users want and allows designers to avoid false expectation about the design context. It was also found that the experience of design team with the users in the workshop was a good source of design ideation. The study also suggests that participatory design approach can become more effective by developing the concept generation toolkits which are more appropriate for design problems and the methods to smoothly transform the concepts from users into synthesized design solutions.

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Size selectivity of the gill net for spinyhead sculpin, Dasycottus setiger in the eastern coastal waters of Korea (동해안 자망에 대한 고무꺽정이 (Dasycottus setiger )의 망목 선택성)

  • PARK, Chang-Doo;BAE, Jae-Hyun;CHO, Sam-Kwang;AN, Heui-Chun;KIM, In-Ok
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.52 no.4
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    • pp.281-289
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    • 2016
  • Spinyhead sculpin Dasycottus setiger, a species of cold water fish, is distributed along the eastern coastal waters of Korea. A series of fishing experiments was carried out in the waters near Uljin from June, 2002 to November, 2004, using the experimental monofilament gill nets of different mesh sizes (82.2, 89.4, 104.8, and 120.2 mm) to describe the selectivity of the gill net for the fish. The SELECT (Share Each Length's Catch Total) analysis with maximum likelihood method was applied to fit the different functional models (normal, lognormal, and bi-normal models) for selection curves to the catch data. The bi-normal model with the fixed relative fishing intensity was selected as the best-fit selection curve by AIC (Akaike's Information Criterion) comparison. For the best-fit selection curve, the optimum relative length (the ratio of fish total length to mesh size) with the maximum efficiency and the selection range ($R_{50%,large}-R_{50%,small}$) of 50% retention were obtained as 2.363 and 0.851, respectively. The ratios of body girth to mesh perimeter at 100% retention where the selection curve of each mesh size represented the optimum total length were calculated as the range of 0.86 ~ 0.87.

History and Current Situation of River Management using Physical Habitat Models in the U.S. and Japan

  • Sekine, Masahiko
    • Korean Journal of Ecology and Environment
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    • v.46 no.1
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    • pp.10-17
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    • 2013
  • History of Instream Flow Incremental Methodology (IFIM) Following the large reservoir and water development era of the mid-twentieth century in North America, resource agencies became concerned over the loss of many miles of riverine fish and wildlife resources in the arid western United States. Consequently, several western states began issuing rules for protecting existing stream resources from future depletions caused by accelerated water development. Many assessment methods appeared during the 1960's and early 1970's. These techniques were based on hydrologic analysis of the water supply and hydraulic considerations of critical stream channel segments, coupled with empirical observations of habitat quality and an understanding of riverine fish ecology. Following enactment of the National Environmental Policy Act (NEPA) of 1970, attention was shifted from minimum flows to the evaluation of alternative designs and operations of federally funded water projects. Methods capable of quantifying the effect of incremental changes in stream flow to evaluate a series of possible alternative development schemes were needed. This need led to the development of habitat versus discharge functions developed from life stage-specific relations for selected species, that is, fish passage, spawning, and rearing habitat versus flow for trout or salmon. During the late 1970's and early 1980's, an era of small hydropower development began. Hundreds of proposed hydropower sites in the Pacific Northwest and New England regions of the United States came under intensive examination by state and federal fishery management interests. During this transition period from evaluating large federal reservoirs to evaluating license applications for small hydropower, the Instream Flow Incremental Methodology (IFIM) was developed under the guidance of the U.S. Fish and Wildlife Service (USFWS).

$F_2$ Formant Frequency Characteristics of the Aging Male and Female Speakers (한국어 모음에서 연령증가에 따른 제2음형대의 변화양상)

  • 김찬우;차흥억;장일환;김선태;오승철;석윤식;이영숙
    • Journal of the Korean Society of Laryngology, Phoniatrics and Logopedics
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    • v.10 no.2
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    • pp.119-123
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    • 1999
  • Background and Objectives : Conditions such as muscle atrophy, stretching of strap muscles, and continued craniofacial growth factors have been cited as contributing to the changes observed in the vocal tract structure and function in elderly speakers. The purpose of the present study is to compare F$_1$ and F$_2$ frequency levels in elderly and young adult male and female speakers producing a series of vowels ranging from high-front to low-back placement. Material and Methods : The subjects were two groups of young adults(10 males, 10 females, mean age 21 years old range 19-24 years) and two groups of elderly speakers(10 males, 10 females, mean age 67 years : range 60-84 years). Each subject participated in speech pathologist to be a speaker of unimpared standard Korean. The headphone was positioned 2 cm from the speakers lips. Each speaker sustained the five vowels for 5 s. Formant frequency measures were obtained from an analysis of linear predictive coding in CSL model 4300B(Kay co). Results : Repeated measure AVOVA procedures were completed on the $F_1$ and $F_2$ data for the male and female speakers. $F_2$ formant frequency levels were proven to be significantly lower fir elderly speakers. Conclusions : We presume $F_2$ vocal cavity(from the point of tongue constriction to lip) lengthening in elderly speakers. The research designed to observe dynamic speech production more directly will be needed.

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Impact of Mathematical Modeling Schemes into Accuracy Representation of GPS Control Surveying (수학적 모형화 기법이 GPS 기준점 측량 정확도 표현에 미치는 영향)

  • Lee, Hungkyu;Seo, Wansoo
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.30 no.5
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    • pp.445-458
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    • 2012
  • The objective of GPS control surveying is ultimately to determine coordinate sets of control points within targeted accuracy through a series of observations and network adjustments. To this end, it is of equivalent importance for the accuracy of these coordinates to be realistically represented by using an appropriate method. The accuracy representation can be quantitively made by the variance-covariance matrices of the estimates, of which features are sensitive to the mathematical models used in the adjustment. This paper deals with impact of functional and stochastic modeling techniques into the accuracy representation of the GPS control surveying with a view of gaining background for its standardization. In order to achieve this goal, mathematical theory and procedure of the single-baseline based multi-session adjustment has been rigorously reviewed together with numerical analysis through processing real world data. Based on this study, it was possible to draw a conclusion that weighted-constrained adjustment with the empirical stochastic model was among the best scheme to more realistically describe both of the absolute and relative accuracies of the GPS surveying results.

A Study on the Improvement Scheme of Quality Management System for Shipping & Port Operation Company (해운항만업체의 품질경영시스템 개선방안에 관한 연구)

  • Ahn, Ki-Myung;Hong, Sog-Min;Kim, Hyun-Duk
    • Journal of Navigation and Port Research
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    • v.30 no.8 s.114
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    • pp.675-683
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    • 2006
  • From Quality Management System in early 1990, through Safety Management System in 1998, to Maritime Security System in 2002, the shipping/port industries had no choice but to accept such management systems as occasion demands or compulsory in recent 10 years. Furthermore some companies have introduced other system such as Environment Management System(ISO 14000), Occupational Health & Safety Assesment Series(OHSAS 18000) additionally. But most companies have introduced & implemented the quality, safety & security management system generally. This paper is to suggest the effective measurement & improvement plan of Quality Management System.