• 제목/요약/키워드: separated position

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Comparative Analysis of Chloroplast Genome of Dysphania ambrosioides (L.) Mosyakin & Clemants Understanding Phylogenetic Relationship in Genus Dysphania R. Br.

  • Kim, Yongsung;Park, Jongsun;Chung, Youngjae
    • 한국자원식물학회지
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    • 제32권6호
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    • pp.644-668
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    • 2019
  • Dysphania ambrosioides (L.) Mosyakin & Clemants which belongs to Chenopodiaceae/Amaranthaceae sensu in APG system has been known as a useful plant in various fields as well as an invasive species spreading all over the world. To understand its phylogenetic relationship with neighbour species, we completed chloroplast genome of D. ambrosioides collected in Korea. Its length is 151,689 bp consisting of four sub-regions: 83,421 bp of large single copy (LSC) and 18,062 bp of small single copy (SSC) regions are separated by 25,103 bp of inverted repeat (IR) regions. 128 genes (84 protein-coding genes, eight rRNAs, and 36 tRNAs) were annotated. The overall GC content of the chloroplast genome is 36.9% and those in the LSC, SSC and IR regions are 34.9%, 30.3%, and 42.7%, respectively. Distribution of simple sequence repeats are similar to those of the other two Dysphania chloroplasts; however, different features can be utilized for population genetics. Nucleotide diversity of Dysphania chloroplast genomes 18 genes including two ribosomal RNAs contains high nucleotide diversity peaks, which may be genus or species-specific manner. Phylogenetic tree presents that D. ambrosioides occupied a basal position in genus Dysphania and phylogenetic relation of tribe level is presented clearly with complete chloroplast genomes.

토폴로지를 반영한 단백질 반점 자동 정합 (Automatic Matching of Protein Spots by Reflecting Their Topology)

  • ;이정배;황영섭
    • 정보처리학회논문지B
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    • 제17B권1호
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    • pp.79-84
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    • 2010
  • 두 개의 이차원 단백질 전기영동 영상에서 한쪽 영상의 각 반점이 다른 영상의 어느 반점과 일치하는 지 알아내는 일은 단백질의 생성과 소멸, 변이 등을 알 수 있게 하는 중요한 일이다. 단백질 반점은 주로 2차원 전기영동에 의해 분리된다. 이 과정은 조직의 상태, 실험 조건 등에 따라 같은 단백질이라도 그 위치가 조금씩 다르게 된다. 각 반점을 정합하여 보면 균일하지 않은 비선형 변환 관계를 이룬다. 그러나 국지적으로 보면 반점 사이의 토폴로지가 유지되는 것을 볼 수 있다. 본 연구는 이러한 토폴로지의 유지에 착안하여 반점끼리 정합하는 방법을 제안한다. 토폴로지의 유사성을 비교하기 위하여 이웃한 반점과의 거리와 각도를 비교하였다. 실험을 통하여 제안한 방법이 우수함을 보였다.

PIV를 이용한 정렬 및 엇갈림 배열을 가진 관군을 지나는 유동장의 가시화 (The Visualization of the Flowfield through Tube Banks with In-line and Staggered Arrangements Using the PIV)

  • 노기덕;박지태;변용수
    • Journal of Advanced Marine Engineering and Technology
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    • 제33권1호
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    • pp.44-51
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    • 2009
  • The Characteristics of the flowfield through tube banks with in-line and staggered arrangements were investigated by PIV. Strouhal numbers, velocity vectors and velocity profiles around the cylinders with in-line and staggered arrangements were observed at the pitch ratio Pt/D=2.0 and Reynolds number of Re=$Re=4.0{\times}10^3$. As the results The flow patterns through tube banks were almost a straight line in case of the in-line arrangement while it was almost 八 type in case of the staggered arrangement in the direction of the wake. The average velocity in the rear region of the tube banks with the staggered arrangement was far smaller than that with the in-line arrangement. The Strouhal number in the last rank was far smaller than that in the front ranks in both of the in-line and staggered arrangements. The wake of each cylinder changed with time and with the position of the cylinder.

Characterization and Phylogenetic Analysis of Chitin Synthase Genes from the Genera Sporobolomyces and Bensingtonia subrorea

  • Nam, Jin-Sik
    • 환경생물
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    • 제23권4호
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    • pp.335-342
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    • 2005
  • We cloned seven genes encoding chitin synthases (CHSs) by PCR amplification from genomic DNAs of four strains of the genus Sporobolomyces and of Bensingtonia subrosea using degenerated primers based on conserved regions of the CHS genes. Though amino acid sequences of these genes were shown similar as 176 to 189 amino acids except SgCHS2, DNA sequences were different in size, which was due to various introns present in seven fragments. Alignment and phylogenetic analysis of their deduced amino acid sequences together with the reported CHS genes of basidiomycetes separated the sequences into classes I, II and III. This analysis also permitted the classification of isolated CHSs; SgCHS1 belongs to class I, BsCHS1, SaCHS1, SgCHS2, SpgCHS1, and SsCHS1 belong to class II, and BsCHS2 belongs to class III. The deduced amino acid sequences involving in class II that were discovered from five strains were also compared with those of other basidiomycetes by CLUSTAL X program. The bootstrap analysis and phylogenetic tree by neighbor-joining method revealed the taxonomic and evolutionary position for four strains of the genus Sporobolomyces and for Bensingtonia subrosea which agreed with the previous classification. The results clearly showed that CHS fragments could be used as a valuable key for the molecular taxonomic and phylogenetic studies of basidiomycetes.

잎담배 Alkaloid분석에 관한 연구 (Studies on the Analysis of Tobacco Leaf Alkaloids)

  • 장기철;한상빈;김용옥;이운철
    • 한국연초학회지
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    • 제13권2호
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    • pp.20-26
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    • 1991
  • This study was carried out to develop the method of alkaloids analysis and investigate the kinds and contents of alkaloids in flue-cured, burley and oriental tobacco leaves using developed analytical method. The developed analytical method of alkaloids was as followed : Tobacco sample was treated with acid(pH 2∼3) and extracted with chloroform to remove chemical components except alkaloids. Sample solution was treated with alkali(pH 12∼ 13) and was extracted with chloroform to obtain alkaloids from sample solution. After extraction of alkaloids from tobacco leaves, alkaloids were separated and identified by GC, GC/MS using SE-54 fused silica capillary column. Nicotine, nornicotine, myosmine, 9-nicotyline, anabasine, anatabine, 2, 3-bipyridyl, cotinine, formyl nornicotine, acetyl nornicotine and formal anatabine were isolated and identified from the extracts of tobacco leaves. The contents of alkaloids were burley > flue-cured > oriental tobacco leaves, but oriental tobacco leaves were higher nornicotine, cotinine, formyl nornicotine and acetyl nornicotine contents than those of flue-cured tobacco leaves. The burley tobacco harvested in Korea was higher nornicotine contents by 2-6 times in the portions of cutter, leaf and tips position than that of burley tobacco(B3F) harvested in V. S. A.

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A multiple scales method solution for the free and forced nonlinear transverse vibrations of rectangular plates

  • Shooshtari, A.;Khadem, S.E.
    • Structural Engineering and Mechanics
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    • 제24권5호
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    • pp.543-560
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    • 2006
  • In this paper, first, the equations of motion for a rectangular isotropic plate have been derived. This derivation is based on the Von Karmann theory and the effects of shear deformation have been considered. Introducing an Airy stress function, the equations of motion have been transformed to a nonlinear coupled equation. Using Galerkin method, this equation has been separated into position and time functions. By means of the dimensional analysis, it is shown that the orders of magnitude for nonlinear terms are small with respect to linear terms. The Multiple Scales Method has been applied to the equation of motion in the forced vibration and free vibration cases and closed-form relations for the nonlinear natural frequencies, displacement and frequency response of the plate have been derived. The obtained results in comparison with numerical methods are in good agreements. Using the obtained relation, the effects of initial displacement, thickness and dimensions of the plate on the nonlinear natural frequencies and displacements have been investigated. These results are valid for a special range of the ratio of thickness to dimensions of the plate, which is a characteristic of the Multiple Scales Method. In the forced vibration case, the frequency response equation for the primary resonance condition is calculated and the effects of various parameters on the frequency response of system have been studied.

부분 반사 프로브를 사용한 공통경로 OCT 이미지 획득 (Common-path OCT Image Using Partial Reflecting Probe)

  • 박재석;정명영;김창석
    • 한국광학회지
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    • 제19권2호
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    • pp.103-107
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    • 2008
  • 기존 OCT 시스템의 Michelson 간섭계와 다르게 간섭신호가 프로브 끝단에서 유도되어 기준신호와 샘플신호가 동일한 경로를 통해 진행하는 공통경로 OCT 시스템을 제작하였다. 최적의 기준신호가 생성되도록 하기 위해 부분반사 프로브(Probe)의 굴절률을 최적화하였고 생체 샘플의 이미지 획득이 가능하도록 프로브의 끝단에서 초점이 맺히도록 볼록 렌즈형 프로브를 제작하였다. 이를 통해서 실제 샘플의 2차원 이미지의 획득이 가능하였다.

역상계에서 방향족 카르복시산류의 이온-쌍 크로마토그래피 (Ion-Pair Chromatography of Aromatic Carboxylic Acids on the Reversed-phase System)

  • 오해범;강삼우;이승석
    • 대한화학회지
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    • 제30권3호
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    • pp.312-319
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    • 1986
  • 알킬 처리된 실리카(ODS)칼럼을 정지상으로하여 역상에서의 이온-쌍 크로마토그래피 법으로 방향족 카르복시산들의 크기 인자를 조사하고 분리하는데 반대 이온으로 브롬화 도데실트리메틸암모늄(DTAB)을 사용하였다. 시료의 크기 인자는 반대 이온의 농도, 메탄올의 농도, 전해질의 종류 및 농도, 시료 분자에 붙어 있는 다른 작용기의 종류 및 위치등에 따라 영향을 받았다. 최적 조건하에서 몇 가지 혼합 시료를 분리할 수 있었다.

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Bulk건조시 미숙엽의 황변시간 조절이 잎담배 이화학성에 미치는 영향 (Effect of Yellowing Times During Yellowing Stage on Physico-chemical Properties of Immature Tobacco Leaves in Bulk Curing)

  • 이철환;진정의;한철수;이승철
    • 한국연초학회지
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    • 제21권1호
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    • pp.10-16
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    • 1999
  • Leaves harvested were separated with visual characters into 2 classes such as immature and mature leaves. In the curing process, the prolonged yellowing treatment during yellowing stage was automatically controlled at the different stalk position, and condition of curing process after this period was all the same with conventional ones. In case of prolonged yellowing in immature leaves, increase of price per kg reached to 8 % compared with those of conventional ones. In physical properties, filling capacity and shatter index was decreased with the degree of maturity, and it was equal level in filling capacity of immature leaves between curing method, while shatter index was decreased in prolonged yellowing treatment than that of conventional ones. There was no difference in chemical components between immature leaves of prolonged yellowing and conventional ones. As to the prolonged yellowing of immature leaves, there was decreased in citric and malic acid contents of the nonvolatile organic acids, and it was equal level in all higher fatty acids content of leaves cured by prolonged yellowing treatment compared with in that of conventional curing method. The contents of key compounds such as solanone, damascenone, damascone in the essential oil were lower in prolonged yellowing of immature leaves than those of mature leaves cured by conventional ones.

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Magnetic field characteristics from HTS quadruple magnet of in-flight separator for a heavy ion accelerator

  • Zhang, Zhan;Lee, Sangjin;Jo, Hyun Chul;Kim, Do Gyun;Kim, Jongwon
    • 한국초전도ㆍ저온공학회논문지
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    • 제17권3호
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    • pp.23-27
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    • 2015
  • Quadruple magnet is an essential component for the accelerator, and the field uniformity in the good field region reflects the quality of quadruple magnet. In this paper, the total magnetic field B was separated into the coil-induced magnetic field $B_s$ and the iron-induced magnetic field $B_c$ to explain why the total magnetic field B has some inhomogeneity. Using Fourier analysis, harmonic components of $B_s$, $B_c$ and B have been analyzed at good field region, respectively. The harmonics of multipole magnet and Fourier analysis are helpful to show the uniformity of magnetic field. Several geometries of yoke and coils were defined to analyze the effect on field uniformity of an HTS quadruple magnet. By the analysis, it was found that the sixth harmonics which is the main factor of field inhomogeneity can be reduced to zero. It means that the sixth harmonics of the magnetic field B can be removed by adjusting the geometry of the magnet pole and the position of coils. We expect that this result can effectively improve the uniformity of an HTS quadruple magnet.