• Title/Summary/Keyword: seed component

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Automatic Liver Segmentation Method on MR Images using Normalized Gradient Magnitude Image (MR 영상에서 정규화된 기울기 크기 영상을 이용한 자동 간 분할 기법)

  • Lee, Jeong-Jin;Kim, Kyoung-Won;Lee, Ho
    • Journal of Korea Multimedia Society
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    • v.13 no.11
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    • pp.1698-1705
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    • 2010
  • In this paper, we propose a fast liver segmentation method from magnetic resonance(MR) images. Our method efficiently divides a MR image into a set of discrete objects, and boundaries based on the normalized gradient magnitude information. Then, the objects belonging to the liver are detected by using 2D seeded region growing with seed points, which are extracted from the segmented liver region of the slice immediately above or below the current slice. Finally, rolling ball algorithm, and connected component analysis minimizes false positive error near the liver boundaries. Our method was validated by twenty data sets and the results were compared with the manually segmented result. The average volumetric overlap error was 5.2%, and average absolute volumetric measurement error was 1.9%. The average processing time for segmenting one data set was about three seconds. Our method could be used for computer-aided liver diagnosis, which requires a fast and accurate segmentation of liver.

Accelerated Resting-State Functional Magnetic Resonance Imaging Using Multiband Echo-Planar Imaging with Controlled Aliasing

  • Seo, Hyung Suk;Jang, Kyung Eun;Wang, Dingxin;Kim, In Seong;Chang, Yongmin
    • Investigative Magnetic Resonance Imaging
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    • v.21 no.4
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    • pp.223-232
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    • 2017
  • Purpose: To report the use of multiband accelerated echo-planar imaging (EPI) for resting-state functional MRI (rs-fMRI) to achieve rapid high temporal resolution at 3T compared to conventional EPI. Materials and Methods: rs-fMRI data were acquired from 20 healthy right-handed volunteers by using three methods: conventional single-band gradient-echo EPI acquisition (Data 1), multiband gradient-echo EPI acquisition with 240 volumes (Data 2) and 480 volumes (Data 3). Temporal signal-to-noise ratio (tSNR) maps were obtained by dividing the mean of the time course of each voxel by its temporal standard deviation. The resting-state sensorimotor network (SMN) and default mode network (DMN) were estimated using independent component analysis (ICA) and a seed-based method. One-way analysis of variance (ANOVA) was performed between the tSNR map, SMN, and DMN from the three data sets for between-group analysis. P < 0.05 with a family-wise error (FWE) correction for multiple comparisons was considered statistically significant. Results: One-way ANOVA and post-hoc two-sample t-tests showed that the tSNR was higher in Data 1 than Data 2 and 3 in white matter structures such as the striatum and medial and superior longitudinal fasciculus. One-way ANOVA revealed no differences in SMN or DMN across the three data sets. Conclusion: Within the adapted metrics estimated under specific imaging conditions employed in this study, multiband accelerated EPI, which substantially reduced scan times, provides the same quality image of functional connectivity as rs-fMRI by using conventional EPI at 3T. Under employed imaging conditions, this technique shows strong potential for clinical acceptance and translation of rs-fMRI protocols with potential advantages in spatial and/or temporal resolution. However, further study is warranted to evaluate whether the current findings can be generalized in diverse settings.

The Effects of Fertilization Level on the Growth and Oil Quality in Sesame (Sesamum indicum L.) (참깨의 생육 및 함유율에 미치는 시비량의 영향)

  • 서관석;조재성;최창열
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.31 no.1
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    • pp.24-29
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    • 1986
  • Experiments were conducted to know the inorganic compound absorption of leaf, and the organic component, oil content, fatty acid composition of seeds by different fertilizer levels and growth stage of Pungn-yeonggage. Ripening rate and seed yield were highest under the standard of nitrogen fertilizer level. Nitrogen and potassium amount of leaves were highest at 20 days after seedlings, but there was no difference in phosphate between growth stages. Absorptions of nitrogen and potassium were increased by applying double amount of nitrogen fertilizer. Oleic fatty acid content was found highest under the double amount of nitrogen, phosphate and potassium fertilizer level, and linoleic fatty acid content was increased with double amount of phosphate fertilizer level.

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The Effects of Natural Disinfectants Naringin on Corneal Epithelium and Endothelium of Rabbit - By Scanning Electron Microscopy (천연보존제 나린진이 가토안의 각막 상피와 내피에 미치는 영향 - 주사전자현미경을 통한 고찰)

  • Kim, In-Suk;Yoo, Geun-Chang;Chae, Soo-Chul;Jeon, Chang-Jin
    • Journal of Korean Ophthalmic Optics Society
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    • v.10 no.1
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    • pp.63-69
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    • 2005
  • The effects of R products of B company and natural disinfectant naringin, well-known chemical disinfectant on Corneal endothelium and epithelium of rabbit were observed by scanning electron microscope. The main component of naringin is extract of grapefruit seed, which is one of the flavonoid widely recognized as natural antioxidants and used as preservative agent of food and cosmetics. The chemical disinfectants cytotoxicity in cell cultures were announced by MIT assay and LDH leakage assay. But there has been no study about that chemical disinfectants and natural disinfectants is inserted drops on rabbit's cornea directly. In this test R products B company and natural disinfectants has been dropped on the cornea of rabbits for one weeks and observed cytotoxiciy by light camera after rose bengal staining. Also, we analysed the damage of corneal epithelium and endothelium morphologically after enucleating the cornea by scanning electron microscope.

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Effects of Chemical Contents Variation in Covered Barley Seed on Near Infrared Reflectance Spectroscopy (겉보리 종실 성분 변이가 근적외 분광분석치에 미치는 영향)

  • 김병주;박의호;정찬식
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.41 no.3
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    • pp.354-361
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    • 1996
  • Near Infrared Reflectance Spectroscopy(NIRS) is accepted as today's most versatile method for rapid chemical analysis. The technique offers rapid multicomponent analysis. This study was conducted to improve the efficiency of quality analysis in covered barley grain, and to search for the effects of chemical components variation in covered barley grain on NIRS. Among the three groups with different range in the contents, each equation for starch contents increased standard error of prediction(SEP) and increased correlation coefficient from 0.872 to 0.883. According as, $\beta$-glucan and protein contents decreased SEP and increased correlation coefficient by expanded chemical components variation. Effective equation for ash contents analysis was obtained from group 3. Among the covered barley chemical components, starch and ash contents were required to conduct futher studies in term of accuracy and variation of contents. It was concluded that NIRS method would be applicable for the rapid determination of $\beta$-glucan and protein contents in covered barley grains.

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Characterization and evaluation of response to heat and chilling stress in exotic weeds using chlorophyll a fluorescence OJIP transient

  • Sohn, Soo In;Lee, Yong Ho;Hong, Sun Hee;Kim, Chang Seok;Kim, Myung Hyun;Na, Chae Sun;Oh, Young Ju
    • Korean Journal of Environmental Biology
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    • v.38 no.3
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    • pp.450-460
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    • 2020
  • The occurrence of exotic weeds and their influx into farmlands due to climate change poses many problems. Therefore, it is necessary to generate a prediction model for the occurrence pattern of these exotic weeds based on scientific evidence and devise prevention measures. The photosynthetic apparatus is known as the most temperature-sensitive component of a plant cell and its initial response to temperature stress is to inhibit the activation of photosystem II. This study investigated the potential of OJIP transients in assessing temperature stress in exotic weeds. The four exotic weeds currently flowing into Korean farmlands include Amaranthus spinosus, Conyza bonariensis, Crassocephalum crepidioides, and Amaranthus viridis. These weeds were treated at 5℃, 10℃, 15℃, 20℃, 25℃, 30℃, 35℃, and 40℃ and the OJIP curves and JIP parameters were measured and analyzed. The results showed that heat and chilling stress affected the photosystem II(PSII) electron transport of A. spinosus, whereas C. crepidioides and A. viridis were more affected by high-temperature stress than by low-temperature stress. Lastly, C. bonariensis showed resistance to both high and low-temperature stress. The results of this study suggest that OJIP transients and JIP parameters can be used to analyze damage to the photosynthetic apparatus by temperature stress and that they can serve as sensitive indicators for the occurrence pattern of exotic weeds.

Discrimination of cultivation ages and cultivars of ginseng leaves using Fourier transform infrared spectroscopy combined with multivariate analysis

  • Kwon, Yong-Kook;Ahn, Myung Suk;Park, Jong Suk;Liu, Jang Ryol;In, Dong Su;Min, Byung Whan;Kim, Suk Weon
    • Journal of Ginseng Research
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    • v.38 no.1
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    • pp.52-58
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    • 2014
  • To determine whether Fourier transform (FT)-IR spectral analysis combined with multivariate analysis of whole-cell extracts from ginseng leaves can be applied as a high-throughput discrimination system of cultivation ages and cultivars, a total of total 480 leaf samples belonging to 12 categories corresponding to four different cultivars (Yunpung, Kumpung, Chunpung, and an open-pollinated variety) and three different cultivation ages (1 yr, 2 yr, and 3 yr) were subjected to FT-IR. The spectral data were analyzed by principal component analysis and partial least squares-discriminant analysis. A dendrogram based on hierarchical clustering analysis of the FT-IR spectral data on ginseng leaves showed that leaf samples were initially segregated into three groups in a cultivation age-dependent manner. Then, within the same cultivation age group, leaf samples were clustered into four subgroups in a cultivar-dependent manner. The overall prediction accuracy for discrimination of cultivars and cultivation ages was 94.8% in a cross-validation test. These results clearly show that the FT-IR spectra combined with multivariate analysis from ginseng leaves can be applied as an alternative tool for discriminating of ginseng cultivars and cultivation ages. Therefore, we suggest that this result could be used as a rapid and reliable F1 hybrid seed-screening tool for accelerating the conventional breeding of ginseng.

The effect of Natural Antimicrobial Agent (천연 물질의 항균 효과)

  • 조춘구;한창규
    • Journal of the Society of Cosmetic Scientists of Korea
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    • v.25 no.3
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    • pp.87-99
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    • 1999
  • Manuka oil named New Zealand’s tea tree oil is oil-soluble and comes firom nature. Manuka oil and its extract $\alpha$-pinene, Oxy’less clear, R-limonene which is one of the component of Citron extracted from Grapefruit seed and Citrex were used to estimate the antimicrobial activity and to improve the capability of antiseptic. Disk diffusion method was used to measure the antimicrobial activity. Escherichia coli which is gram-negative bacteria and Staphylococcus aureus which is gram-positive bacteria were used as strain. The antimicrobial activity of Manuka oil and $\alpha$-pinene for Escherichia coli, Staphylococcus aureus was similar when the concentration of Manuka oil and $\alpha$-pinene are 10u/paper disk. However, antimi-crobial activity of Manuka oil fDr Escherichia coli, Staphylococcus aurem was better than that of $\alpha$-pinene when the concentration of Manuka oil and $\alpha$-pinene was low. Antimicrobial activity of Oxy’less clear is better than that of propyl para hydroxybenzoate(PPHB), R-limonene at all the concentration and is similar to that of $\alpha$-pinene. Antimicrobial activity.

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Analysis of Phosphorylation of the BRI1/BAK1 Complex in Arabidopsis Reveals Amino Acid Residues Critical for Receptor Formation and Activation of BR Signaling

  • Yun, Hye Sup;Bae, Young Hee;Lee, Yun Ji;Chang, Soo Chul;Kim, Seong-Ki;Li, Jianming;Nam, Kyoung Hee
    • Molecules and Cells
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    • v.27 no.2
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    • pp.183-190
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    • 2009
  • The plasma membrane-localized BRASSINOSTEROID-INSENSITIVE1 (BRI1) and BRI1-ASSOCIATED KINASE1 (BAK1) are a well-known receptor pair involved in brassinosteroids (BR) signaling in Arabidposis. The formation of a receptor complex in response to BRs and the subsequent activation of cytoplasmic domain kinase activity share mechanistic characteristics with animal receptor kinases. Here, we demonstrate that BRI1 and BAK1 are BR-dependently phosphorylated, and that phosphorylated forms of the two proteins persist for different lengths of time. Mutations of either protein abolished phosphorylation of the counterpart protein, implying transphosphorylation of the receptor kinases. To investigate the specific amino acids critical for formation of the receptor complex and activation of BAK1 kinase activity, we expressed several versions of BAK1 in yeast and plants. L32E and L46E substitutions resulted in a loss of binding of BAK1 to BRI1, and threonine T455 was essential for the kinase activity of BAK1 in yeast. Transgenic bri1 mutant plants overexpressing BAK1(L46E) displayed reduced apical dominance and seed development. In addition, transgenic wild type plants overexpressing BAK1(T455A) lost the phosphorylation activity normally exhibited in response to BL, leading to semi-dwarfism. These results suggest that BAK1 is a critical component regulating the duration of BR efficacy, even though it cannot directly bind BRs in plants.

Evaluation of Millet (Panicum miliaceum subsp. miliaceum) Germplasm For Seed Fatty Acids Using Near-Infrared Reflectance Spectroscopy

  • Lee, Young-Yi;Kim, Jung-Bong;Lee, Ho-Sun;Jeon, Young-A;Lee, Sok-Young;Kim, Chung-Kon
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.57 no.1
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    • pp.29-34
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    • 2012
  • The objective of this study was to rapidly evaluate fatty acids in a collection of millet (Panicum miliaceum subsp. miliaceum) of different origins so that this information could be disseminated to breeders to advance germplasm use and breeding. To develop the calibration equations for rapid and nondestructive evaluation of fatty acid content, near-infrared reflectance spectroscopy (NIRs) spectra (1104-2494 nm) of samples ground into flour ($n$=100) were obtained using a dispersive spectrometer. A modified partial least-squares model was developed to predict each component. For foxtail millet germplasm, our models returned coefficients of determination ($R^2$) of 0.89, 0.89, 0.89, and 0.92 for palmitic acid, oleic acid, linoleic acid, and total fatty acids, respectively. The prediction of the external validation set (n=10) showed significant correlation between references values and NIRs values ($r^2$=0.64, 0.90, 0.79, and 0.89 for palmitic acid, oleic acid, linoleic acid, and total fatty acids, respectively). Standard deviation/standard errors of cross-validation (SD/SECV) values were close to 3 (2.62, 2.40, 1.85, and 2.23 for palmitic acid, oleic acid, linoleic acid, and total fatty acids, respectively). These results indicate that these NIRs equations are functional for the mass screening and rapid quantification of the oleic and total fatty acids characterizing millet germplasm. Among the samples, IT153514 showed an especially high content of fatty acids ($48.14mg\;g^{-1}$), whereas IT123909 had a very low content ($34.44mg\;g^{-1}$).