• Title/Summary/Keyword: score sequence

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Effect of Microwave Irradiation Time on Microwave-Assisted Weak Acid Protein Hydrolysis

  • Kim, Dahee;Joo, Minhee;Lee, Dabin;Nguyen, Huu-Quang;Kim, Jeongkwon
    • Mass Spectrometry Letters
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    • v.10 no.3
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    • pp.79-83
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    • 2019
  • Horse heart myoglobin (MYG) and bovine serum albumin (BSA) were hydrolyzed by microwave-assisted weak-acid hydrolysis for 10, 20, 30, 40, 50, and 60 min using 2% formic acid (FA) at $100^{\circ}C$. Generally, the number of identified peptides increased with increasing irradiation time, indicating that the duration of microwave irradiation is linked to the efficiency of hydrolysis. For MYG, irradiation for 60 min provided the highest number of identified peptides, the greatest sequence coverage values and the highest MASCOT score values among the investigated irradiation times. Irradiation of BSA for 50 min, however, yielded a greater number of peptides than irradiation for 60 min due to the generation of miscleaved peptides after microwave irradiation for 50 min.

Detecting Anomalous Trajectories of Workers using Density Method

  • Lan, Doi Thi;Yoon, Seokhoon
    • International Journal of Internet, Broadcasting and Communication
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    • v.14 no.2
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    • pp.109-118
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    • 2022
  • Workers' anomalous trajectories allow us to detect emergency situations in the workplace, such as accidents of workers, security threats, and fire. In this work, we develop a scheme to detect abnormal trajectories of workers using the edit distance on real sequence (EDR) and density method. Our anomaly detection scheme consists of two phases: offline phase and online phase. In the offline phase, we design a method to determine the algorithm parameters: distance threshold and density threshold using accumulated trajectories. In the online phase, an input trajectory is detected as normal or abnormal. To achieve this objective, neighbor density of the input trajectory is calculated using the distance threshold. Then, the input trajectory is marked as an anomaly if its density is less than the density threshold. We also evaluate performance of the proposed scheme based on the MIT Badge dataset in this work. The experimental results show that over 80 % of anomalous trajectories are detected with a precision of about 70 %, and F1-score achieves 74.68 %.

Integrated Char-Word Embedding on Chinese NER using Transformer (트랜스포머를 이용한 중국어 NER 관련 문자와 단어 통합 임배딩)

  • Jin, ChunGuang;Joe, Inwhee
    • Annual Conference of KIPS
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    • 2021.05a
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    • pp.415-417
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    • 2021
  • Since the words and words in Chinese sentences are continuous and the length of vocabulary is huge, Chinese NER(Named Entity Recognition) always based on character representation. In recent years, many Chinese research has been reconsidered how to integrate the word information into the Chinese NER model. However, the traditional sequence model has complex structure, the slow inference speed, and an additional dictionary information is needed, which is difficult to implement in the industry. The approach in this paper has the state of the art and parallelizable, which is integrated the char-word embeddings, so that the model learns word information. The proposed model is easy to implement, and outperforms traditional model in terms of speed and efficiency, which is improved f1-score on two dataset.

Effect of Sequence Variation in Bovine Mitochondrial DNA D-loop Region on Economic Traits for Hanwoo (한우 경제형질에 미치는 Mitochondrial DNA D-loop 영역의 염기서열 변이효과)

  • Oh, J.D.;Yoon, D.H.;Kong, H.S.;Lim, H.J.;Lee, H.K.;Cho, B.W.;Hong, K.C.;Jeon, G.J.
    • Journal of Animal Science and Technology
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    • v.45 no.6
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    • pp.933-938
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    • 2003
  • This study was performed to analyse the sequences of variations of mtDNA D-loop and their effects on carcass traits in Hnawoo(Korean cattle). The resulting sequences were compared with previously published sequences for other cattle breeds(GenBank J01394). The PCR was used to amplify a total of 964 bp between nucleotide 15758 and 383 within D-loop region of mtDNA using specific primers. Twenty five polymorphic sites by nucleotide substitution were found in mtDNA of Hanwoo. The frequencies of positions at 169, 16042, 16093, 16119, 16255 and 16302 nt with high levels of sequence polymorphism were 0.891, 0.117, 0.109, 0.182, 0.197 and 0.117, respectively. The substitution effect at 169 and 16119 nt was found significant on marbling score. Also substitution effect at 169 and 16042 nt was highly significant(p〈0.01) on backfat. thickness. Polymorphism of mtDNA sequence in D-loop region could be useful for the analysis of cytoplasmic genetic variation and associations with the other economically important traits and maternal lineage analysis in Hanwoo.

Purchase Transaction Similarity Measure Considering Product Taxonomy (상품 분류 체계를 고려한 구매이력 유사도 측정 기법)

  • Yang, Yu-Jeong;Lee, Ki Yong
    • KIPS Transactions on Software and Data Engineering
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    • v.8 no.9
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    • pp.363-372
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    • 2019
  • A sequence refers to data in which the order exists on the two items, and purchase transaction data in which the products purchased by one customer are listed is one of the representative sequence data. In general, all goods have a product taxonomy, such as category/ sub-category/ sub-sub category, and if they are similar to each other, they are classified into the same category according to their characteristics. Therefore, in this paper, we not only consider the purchase order of products to compare two purchase transaction sequences, but also calculate their similarity by giving a higher score if they are in the same category in spite of their difference. Especially, in order to choose the best similarity measure that directly affects the calculation performance of the purchase transaction sequences, we have compared the performance of three representative similarity measures, the Levenshtein distance, dynamic time warping distance, and the Needleman-Wunsch similarity. We have extended the existing methods to take into account the product taxonomy. For conventional similarity measures, the comparison of goods in two sequences is calculated by simply assigning a value of 0 or 1 according to whether or not the product is matched. However, the proposed method is subdivided to have a value between 0 and 1 using the product taxonomy tree to give a different degree of relevance between the two products, even if they are different products. Through experiments, we have confirmed that the proposed method was measured the similarity more accurately than the previous method. Furthermore, we have confirmed that dynamic time warping distance was the most suitable measure because it considered the degree of association of the product in the sequence and showed good performance for two sequences with different lengths.

Deletion-Based Sentence Compression Using Sentence Scoring Reflecting Linguistic Information (언어 정보가 반영된 문장 점수를 활용하는 삭제 기반 문장 압축)

  • Lee, Jun-Beom;Kim, So-Eon;Park, Seong-Bae
    • KIPS Transactions on Software and Data Engineering
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    • v.11 no.3
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    • pp.125-132
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    • 2022
  • Sentence compression is a natural language processing task that generates concise sentences that preserves the important meaning of the original sentence. For grammatically appropriate sentence compression, early studies utilized human-defined linguistic rules. Furthermore, while the sequence-to-sequence models perform well on various natural language processing tasks, such as machine translation, there have been studies that utilize it for sentence compression. However, for the linguistic rule-based studies, all rules have to be defined by human, and for the sequence-to-sequence model based studies require a large amount of parallel data for model training. In order to address these challenges, Deleter, a sentence compression model that leverages a pre-trained language model BERT, is proposed. Because the Deleter utilizes perplexity based score computed over BERT to compress sentences, any linguistic rules and parallel dataset is not required for sentence compression. However, because Deleter compresses sentences only considering perplexity, it does not compress sentences by reflecting the linguistic information of the words in the sentences. Furthermore, since the dataset used for pre-learning BERT are far from compressed sentences, there is a problem that this can lad to incorrect sentence compression. In order to address these problems, this paper proposes a method to quantify the importance of linguistic information and reflect it in perplexity-based sentence scoring. Furthermore, by fine-tuning BERT with a corpus of news articles that often contain proper nouns and often omit the unnecessary modifiers, we allow BERT to measure the perplexity appropriate for sentence compression. The evaluations on the English and Korean dataset confirm that the sentence compression performance of sentence-scoring based models can be improved by utilizing the proposed method.

Study Gene Interaction Effect Based on Expanded Multifactor Dimensionality Reduction Algorithm (확장된 다중인자 차원축소 (E-MDR) 알고리즘에 기반한 유전자 상호작용 효과 규명)

  • Lee, Jea-Young;Lee, Ho-Guen;Lee, Yong-Won
    • The Korean Journal of Applied Statistics
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    • v.22 no.6
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    • pp.1239-1247
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    • 2009
  • Study the gene about economical characteristic of human disease or domestic animal is a matter of grave interest, preserve and elevation of gene of Korea cattle is key subject. Studies have been done on the gene of Korea cattle using EST based SNP map, but it is based on statistical model, therefore there are difference between real position and statistical position. These problems are solved using both EST_based SNP map and Gene on sequence by Lee et al. (2009b). We have used multifactor dimensionality reduction(MDR) method to study interaction effect of statistical model in general. But MDR method cannot be applied in all cases. It can be applied to the only case-control data. So, method is suggested E-MDR method using CART algorithm. Also we identified interaction effects of single nucleotide polymorphisms(SNPs) responsible for average daily gain(ADG) and marbling score(MS) using E-MDR method.

Perfusion RRI of the Brain Using Oxygen Inhalation (산소 호흡을 이용한 뇌의 관류 자기공명영상)

  • 최순섭
    • Investigative Magnetic Resonance Imaging
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    • v.4 no.2
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    • pp.113-119
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    • 2000
  • Purpose : To know the possibility of clinical application of MRI using oxygen inhalation as a perfusion MRI Materials and methods : Two healthy volunteers and three patients of one moyamoya disease, one acute infarction and one meningioma were studied using a 1.5 Tesla MRI unit. Oxygen (15 liters/min) mixed with room air was given using face mask from 8 second to 35 second during the study. Images were acquired 25 times (scan time per study were 1.6 seconds) using susceptibility contrast EPI (echo planar image) sequence. Difference maps were acquired by early (study 12-18), and late (study 19-25) O2 inhalation image groups minus pre-O2 inhalation image group (study 3-9) with a Z-score of 0.7-1.0 using VB31C program of Magneton Vision. The resulting perfusion images were created by superimposition of difference maps on corresponding T1 weighted anatomic images. On moyamoya patient, similar perfusion images were acquired after Gd-DTPA injection, and compared with O2 inhalation perfusion images. Results ; The author can get the perfusion images of the brain by oxygen inhalation with susceptibility contrast EPI sequence at the volunteers, and the patient of moyomoya disease, acute infarction and meningioma. On moyamoya patient, perfusion images with O2 inhalation are similar with perfusion images by Gd-DTPA injection. Conclusion 1 This study has demonstrated that the susceptibility contrast EPI by oxygen inhalation can be used as the clinically useful perfusion MRI technique

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Industrial Fatigue and Low Back Pain of the Workers (산업장 근로자들의 피로자각증상과 요통)

  • Kim, Soon-Lae;Moon, Jung-Soon
    • Research in Community and Public Health Nursing
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    • v.7 no.2
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    • pp.400-409
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    • 1996
  • To investigate industrial fatigue and low back pain, the questionaire survey for subjective symptoms of fatigue and low back pain was carried out among 591 male workers aged 20-55 employed in an automobile industry in Korea. Workers participated to this study were divided into low back pain group(LBP) and control group, according to the self-reports by written questionaires. The subjective sysptoms of fatigue comprised three groups of 10 items each, representing dullness and sleepiness(level of cerebral activation), difficulty in concentration(level of motivation) and bodily projection of fatigue. The resultant data were processed for $\chi^2-test$, t-test and a pearson's correlation coefficient to confirm the relationships. The results were as follows: 1. 30 items of fatigue subjective symptoms exeptone item, 'lack in perseverance', were directly associated with low back pain. 2. The percentage of fatigue complaint were sig nificantly higher in LBP group. 3. Of the 30 items of fatigue subjective symptoms, the highest percentage was accounted for 'eye strain'(27.9%), followed by 'whole body feels tired' and 'legs feel heavy'(22.9%), 'feel like lying'(21.4%), 'feel a pain in the low back'(18.7%), 'feel drowsy'(16.4%) and 'feel stiffness in the neck or the shoulders'(16.2%) in the order of sequence. 4. The average weighted score for the first group of fatigue items(dullness and sleepiness) was the largest among three groups and was followed by the second group(difficulty in concentration) and the third group(bodily projection of fatigue) in the order of sequence, suggesting the heavier shift work stress of the workers. 5. In the groups of the aged 30-40, work duration of 5-7yrs, heavy work amount and irregular work speed, significant high fatigue complaints were revealed in terms of eye strain, whole body feels tired, legs feel heavy, feel like lying, feel a pain in the low back and feel stiffness in the neck or the shoulders. 6. A significant negative correlations were shown between age, work duration and eleven subjective symptoms while positive reciprocal correlations were shown between eleven items with one another.

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A Study of the Validating Evaluation of Science Curriculum Sequence and Instructional Effectiveness with the Application and Hierarchical Analysis of Science Conceptions (과학개념의 위계적 분석 및 그 적용을 통한 교수 효과와 과학교육과정 계열성의 타당화 평가 연구)

  • Jeong, Jin-Woo;Cho, Seon-Hyeng;Lim, Cheong-Hwan
    • Journal of The Korean Association For Science Education
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    • v.16 no.1
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    • pp.1-12
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    • 1996
  • The purpose of this study is to investigate the psychological hierarchy structure of science concepts and to determine the effective teaching order by comparing the teaching effects of the psychological hierarchy order with those of teaching order of the current text in order to inquire validating evaluation framework of science curriculum sequence. Key concepts were selected by tasks analysis in the seven units of elementary and secondary school curriculum. Concept formation tests were developed to evaluate each concepts achievement,. The test items were made according to each of the concepts based on 12 prototype tasks developed by Frayer(1969). To identify the students' psychological hierarchy the test items were administrated to elementary and secondary school students. Ordering theory was used to identify the students' psychological hierarchy. Nonequivalent control group pretest-posttest design was used in this study as an experimental design. Teaching with psychological hierarchy order was applied tp experimental group and teaching with concept order described in the current text was applied to control group. The major results of this study are as followings: 1. The students' psychological hierarchy structures are different from logical hierarchy structures. 2. The science teachers' psychological hierarchy structures are different from not only logical hierarchy structures but also students' psychological hierarchy structures. 3. The mean score of experimental group applied psychological hierarchy order is significantly higher(p<.05) than the control group in the concept achievement.

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