Distribution status, habitat characteristics, and extinction threat evaluation of the endangered species, Brachymystax lenok tsinlingensis were investigated in 2015 and 2019. Historical distribution reports of B. l. tsinlingensis were divided into before 1990, 1997~2006, 2000~2011, and 2010~2019. Among the 150 sampling sites investigated during the study period, number of individuals of B. l. tsinlingensis were collected 542 individuals from 67 sites. The streams inhabited of B. l. tsinlingensis were Naerincheon (11 stations), Odaecheon (11 stations), Bukcheon (10 stations), Bangtaecheon (8 stations), Songjeongricheon (4 stations), Suipcheon (3 stations), Inbukcheon (3 stations), Hyeondongcheon (3 stations) etc. The main habitat of B. l. tsinlingensis was upstream of the river with a high altitude of more than 400 m, 4~20 m water flow width, 1~2 m water depth, and high ratio (70~80%) boulder bottoms. The main reasons for the decline in population size were assumed as river works, construction of reservoirs and bridges, discharge of contaminated water into the river, the inflow of summer vacationers, and weir. Compared to our results there exists evidence that states a 20.7% reduction in occupancy within 10 years, in a small appearance range (7,732 km2) and occupancy area (268 km2), number of disconnected locations (15 locations), and a decline in habitat quality. Therefore, B. l. tsinlingensis is now considered as Near Threatened (NT) based on the results (Near meets VU A2acd, B1b(i,ii,iii)+B2b(i,ii,iii)) of IUCN Red List categories and criteria.