• 제목/요약/키워드: repeat unit

검색결과 74건 처리시간 0.022초

잣나무(Pinus koraiensis)의 cDNA library 제작 및 EST 분석 (Construction of a full-length cDNA library from Pinus koraiensis and analysis of EST dataset)

  • 김준기;임수빈;최선희;이종석;노승문;임용표
    • 농업과학연구
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    • 제38권1호
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    • pp.11-16
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    • 2011
  • In this study, we report the generation and analysis of a total of 1,211 expressed sequence tags (ESTs) from Pinus koraiensis. A cDNA library was generated from the young leaf tissue and a total of 1,211 cDNA were partially sequenced. EST and unigene sequence quality were determined by computational filtering, manual review, and BLAST analyses. In all, 857 ESTs were acquired after the removal of the vector sequence and filtering over a minimum length 50 nucleotides. A total of 411 unigene, consisting of 89 contigs and 322 singletons, was identified after assembling. Also, we identified 77 new microsatellite-containing sequences from the unigenes and classified the structure according to their repeat unit. According to homology search with BLASTX against the NCBI database, 63.1% of ESTs were homologous with known function and 22.2% of ESTs were matched with putative or unknown function. The remaining 14.6% of ESTs showed no significant similarity to any protein sequences found in the public database. Gene ontology (GO) classification showed that the most abundant GO terms were transport, nucleotide binding, plastid, in terms biological process, molecular function and cellular component, respectively. The sequence data will be used to characterize potential roles of new genes in Pinus and provided for the useful tools as a genetic resource.

Synthesis, and Structural and Thermal Characterizations of Tetrasulfonated Poly(arylene biphenylsulfone ether) Copolymer Ion Conducting Electrolytes

  • Yoo, Dong-Jin;Hyun, Seung-Hak;Kim, Ae-Rhan;Kumar, G. Gnana;Nahm, Kee-Suk
    • Bulletin of the Korean Chemical Society
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    • 제32권11호
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    • pp.4041-4048
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    • 2011
  • High molecular weight tetrasulfonated poly(arylene biphenylsulfone ether) (TsPBPSEH) copolymers containing up to four pendant sulfonate groups per repeat unit were synthesized via aromatic nucleophilic displacement condensation from 4,4'-bis(4-chloro-3-sulfonatophenylsulfonyl)biphenyl-2,2'-disulfonate (SBCSBPD), 4,4'-dichlorodiphenylsulfone (DCDPS) and 4,4'-(hexafluoroisopropylidene)diphenol (6F-BPA). The synthesized copolymers were structurally characterized using $^1H$ NMR and FT-IR techniques. They were analytically pure, amorphous and were readily soluble in a wide range of organic solvents. Electrolyte membranes were successfully cast using the synthesized polymers with various sulfonation levels and N-methyl-2-pyrrolidinone. This new class of polymer membranes exhibited elevated thermal and physical stabilities and reduced swelling at high temperatures. An increase of acidic functional groups in the copolymer yielded high ion exchange capacity and moderate ionic conductivity values even at higher temperatures, which makes them potential ion conducting candidates.

Evaluation of Genetic Differentiation of Albizia lucida Populations from Eastern Region of the Indian Sub-continent by ISSR Markers

  • Aparajita, Subhashree;Rout, G.R.
    • Journal of Forest and Environmental Science
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    • 제24권1호
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    • pp.27-34
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    • 2008
  • Level and distribution of genetic diversity in seven populations of Albizia lucida Benth. in eastern region of the Indian sub-continent were estimated using ISSR markers. Relatively higher level of genetic diversity within populations was observed in seven populations of A. lucida (mean of 0.38). From the result of AMOVA, majority of genetic diversity was allocated within populations (96.2%) resulting in a moderate degree of population differentiation. The observed distribution pattern of I-SSR variant among the populations was coincided with the typical pattern of long-lived woody tree species. Genetic relationships among the populations, reconstructed by UPGMA method, revealed two genetic groups. The population of Anugul and Bargarh turned out to be the most closely related despite a distance location between them. These formations will be of great value in the development of conservation plans for species exhibiting high levels of genetic differentiation due to fragmentation, such as indication of conservation unit size, which populations should be chosen as priority in conservation plans and which samples should be introduced in areas with a low number of individuals of A. lucida.

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Content Based Dynamic Texture Analysis and Synthesis Based on SPIHT with GPU

  • Ghadekar, Premanand P.;Chopade, Nilkanth B.
    • Journal of Information Processing Systems
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    • 제12권1호
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    • pp.46-56
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    • 2016
  • Dynamic textures are videos that exhibit a stationary property with respect to time (i.e., they have patterns that repeat themselves over a large number of frames). These patterns can easily be tracked by a linear dynamic system. In this paper, a model that identifies the underlying linear dynamic system using wavelet coefficients, rather than a raw sequence, is proposed. Content based threshold filtering based on Set Partitioning in a Hierarchical Tree (SPIHT) helps to get another representation of the same frames that only have low frequency components. The main idea of this paper is to apply SPIHT based threshold filtering on different bands of wavelet transform so as to have more significant information in fewer parameters for singular value decomposition (SVD). In this case, more flexibility is given for the component selection, as SVD is independently applied to the different bands of frames of a dynamic texture. To minimize the time complexity, the proposed model is implemented on a graphics processing unit (GPU). Test results show that the proposed dynamic system, along with a discrete wavelet and SPIHT, achieve a highly compact model with better visual quality, than the available LDS, Fourier descriptor model, and higher-order SVD (HOSVD).

The Effect of Dual-task Training on a Serial Reaction Time Task for Motor Learning

  • Choi, Jin-Ho;Park, So Hyun
    • The Journal of Korean Physical Therapy
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    • 제24권6호
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    • pp.405-408
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    • 2012
  • Purpose: We examined the effect of dual-task and single-task training on serial reaction time (SRT) task performance to determine whether SRT is based more on motor or perception in a dual-task. Methods: Forty healthy adults were divided into two groups: the dual-task group (mean age, $21.8{\pm}1.6$ years) and the single-task group (mean age, $21.7{\pm}1.6$ years). SRT task was conducted total 480 trial. The four figures were presented randomly 16 times. A unit was set as 1 block that would repeat 10 times. Thus, there were a total of 160 trials for each of the three color conditions. The dual-task group performed an SRT task while detecting the color of a specific shape. The end of the task, subjects answered the specific shape number; the single-task group only performed the SRT task. The study consisted of three parts: pre-measurement, task performance, and post-measurement. Results: Differences of pre and post reaction time between two group was higher for the dual-task group as compared to the single task group and there was a significant interaction between time and group (p<0.05). Conclusion: Our results indicate that. short term period SRT is not quiet effective under dual-task conditions, individuals need additional cognitive processes to successfully navigate a task This suggests that dual-task training might not be appropriate for motor learning enhancement, at least when the training is over a short period.

[P(AA-co-PEGMM)] 공중합체 필름의 합성 및 물리화학적 특성 (Synthesis of [P(AA-co-PEGMM)] Copolymer Films and its Physicochemical Characteristics)

  • 김준식;박정숙;한건
    • Journal of Pharmaceutical Investigation
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    • 제31권3호
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    • pp.173-180
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    • 2001
  • The physicochemical characteristics such as glass transition temperature (Tg), surface energy, swelling and FT-IR of [P(AA-co-PEGMM)], a copolymer of acrylic acid (AA) and polyethyleneglycol monoethylether mono methacrylate (PEGMM), were evaluated. The Tg of [P(AA-co-PEGMM)] decreased with increasing PEGMM content. [P(AA-co-PEGMM)] with 18 mole% PEGMM had the Tg of about $40^{\circ}C$, the similar physiological temperature of human. Moreover, [P(AA-co-PEGMM)] with lower PEGMM content had higher hydration and expected lower mucoadhesive strengths. To predict the mucoadhesiveness of [P(AA-co-PEGMM)] films, the contact angle of films were measured. With the increasing content of PEGMM of films, the contact angle was increased and the higher mucoadhesive forces was expected. ATR-FTIR studies revealed that the addition of the PEG moiety in AA increased the potential of hydrogen bonding for [P(AA-co-PEGMM)] as compared to cross linking polyacrylic acid (cr-PAA) because the oxygen in the repeat unit of PEG contributed in the formation of hydrogen bonding in the presence of mucin solution.

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시설재배를 위한 웹 기반의 원격 관리 시스템의 개발 및 성능평가 (Development and Performance Evaluation of a Web-based Management System for Greenhouse Teleoperation)

  • 심주현;백운재;박주현;이석규
    • Journal of Biosystems Engineering
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    • 제29권2호
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    • pp.159-166
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    • 2004
  • In this study, we have developed a web-based management system for greenhouse teleoperation. The remote control system consisted of a database, a web-server, a controller in greenhouse, and clients. The database in the server stored user's information and greenhouse conditions was used to manage user's login and conditioning data. The management system developed by using Java applet, which was a client program for effective and easy management of greenhouse, monitored the greenhouse in real time. Master and driver boards were installed in the greenhouse control unit. Database on flowering to collect and analyze data exchanged data with the server. The master board could be managed effectively by timer routine, repeat control within setting time, and algorithm of setting points. Also, the greenhouse conditions could be controlled by manual or remote controller(PC) through a web browser in internet. Furthermore, all of the control devices of the greenhouse were managed by remote control of using PC and checked via camera installed in greenhouse. Finally, we showed the experimental results of the system which was installed in Pusan Horticultural Experiment Station.

SFRP Synthesis of Acenaphthylene Oligomers and Block Copolymers. Potential Light Harvesting Structures

  • Ali, Dildar;Ahmed, Zaheer;Dust, Julian M.;Kazmaier, Peter M.;Buncel, Erwin
    • Bulletin of the Korean Chemical Society
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    • 제32권7호
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    • pp.2377-2384
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    • 2011
  • Azo-acenaphthylene oligomers with repeating acenaphthylene units "n" up to 4, 5, 7, 17 and 19 have been prepared successfully using nitroxide mediated Stable Free Radical Polymerization (SFRP). Azo-acenaphthylene oligomers, reversibly end-capped by the stable nitroxide 2,2,6,6-tetramethyl-1-piperidinoxyl (TEMPO), were further reacted via radical addition to 4-(naphthalenemethoxy)styrene monomer for diblock co-polymer formation. Characterization of the oligomers and diblock co-polymers was accomplished using MALDI-MS supported by GPC (Gel Permeation Chromatography) and $^1H$ NMR spectrometry. MALDI-MS afforded definitive results by providing an inter-peak interval of 152 (m/z), corresponding to acenaphthylene monomer, and inter-peak interval of 260 (m/z) for the naphthalenemethoxystyrene monomer unit in block copolymers. Our study opens the way to control the number of repeat units in the oligomers. Further these oligomers can be tailored with various monomers for the formation of block copolymers.

마이크로 격자트러스모델을 이용한 반복강성제어법에 의한 콘크리트 구조형태의 최적화 (Structural Layout Design for Concrete Structures Based on the Repeated Control Method by Using Micro Lattice Truss Model)

  • 최익창;유미일랑
    • 콘크리트학회논문집
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    • 제20권6호
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    • pp.705-712
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    • 2008
  • 본 연구에서는 그라운드 구조법을 이용하여 콘크리트 구조형태의 최적화에 대한 수치 실험을 하였다. 마이크로 격자 모델은 단위 셀의 집합체로 구성되었다. 해석 과정은 각 부재의 응답계를 강성에 피드백 시켜서 유한요소해석을 반복하였다. 이 해석의 반복을 통하여, 트러스 모델은 수리적 최적화 수법이 아니라 국소적인 응력 상태를 이용하여 위상적인 구조 형태와 구조적 형상을 표현하였다. 격자 트러스 모델을 여러 예제에 적용하여 형상 배치 문제를 해석하는데 성공하였다.

Cloning and Organization of the Ribosomal RNA Genes of the Mushroom Trichloma matsutake

  • Hwang, Seon-Kap;Kim, Jong-Guk
    • Journal of Microbiology and Biotechnology
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    • 제5권4호
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    • pp.194-199
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    • 1995
  • A portion (7.4 kb) of ribosomal DNA tandem repeat unit from a genome of the mushroom T. matsutake has been cloned. A 1.75 kb EcoRI fragment was cloned first using S. cerevisiae 255 rRNA gene as a probe, and this was then used for further cloning. A chromosomal walking experiment was carried out and the upstream region of the 1.75 kb fragment was cloned using SmaI/BamHI enzyme, the size was estimated to be 5.2 kb in length. Part of the downstream region of the 1.75 kb fragment was also cloned using XbaI/BamHI enzymes. Restriction enzyme maps of three cloned DNA fragments were constructed. Northern hybridization, using total RNA of T. matsutake, and the restriction fragments of three cloned DNAs as probes, revealed that all four ribosomal RNA genes (large subunit[LSU], small subunit [SSU], 5.85 and 5S rRNA genes) are present in the cloned region. The gene organization of the rDNA are regarded as an intergenic spacer [IGS]2 (partial) - SSU rRNA - internal transcribed spacer [ITS]1 - 5.8S rRNA - ITS2 - LSU rRNA - IGS1 -5S rRNA - IG52 (partial).

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