• Title/Summary/Keyword: region contrast

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Genetic Difference Analysis and Environmental Assessment of Miscanthus sinensis and Phragmites australis to Apply Regional Seed for Restoration in Korea (복원 소재로서 지역 종자 적용을 위한 억새와 갈대의 유전적 변이분석)

  • Hong, Sun Hee;Park, Sang Yong;Min, Kyeoung Do;Kim, Jae Yoon
    • Korean Journal of Environmental Biology
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    • v.36 no.4
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    • pp.463-470
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    • 2018
  • Restoration ecology is the practical study of renewing and restoring a spoilt, degraded, or devastated ecosystems in the environment. Because the Korean industry has been drastically developed for the past few decades, the Korean ecosystem requires restoration using regional seed. In this study, we identified the variation of phylogenic relationship of Miscanthus sinensis or Phragmites australis by locations in Korea. Chloroplast DNA atpF-H and psbA-trnH interspace region were used as a molecular marker to resolve the phylogenic relationship in 10 different locations. We performed the molecular phylogenetic analysis with 10 chloroplast DNAs from each location using Kimura 2-parameter. The analysis of Miscanthus showed that all atpF-H genes were exact matches except for Ose san. In contrast to Mischanthus, the atpF-H genes from Phragmites were observed to have more variation. A total of 7 locations revealed the variation in chloroplast gene. According to the phylogenic tree in Phragmites, 2 of 10 samples in 6 locations and 3 of 10 in 1 location showed variation with 0.160-0.181 genetic distance. According to the genetic distance of the Miscanthus sinensis, there were no mutations in all regions except the Hongsung. These results support regional differences and show the necessity for seed collection by region. In the case of Phragmites australis, genetic variation occurred in all regions.

A Study on the Geographical Distribution of Functional Classification and SWOT-PEST Analysis for China's Inland Ports (중국 내륙항의 기능적 유형화의 지리적 분포와 SWOT-PEST 분석)

  • Liu, Yanfeng;Lee, Choong-Bae
    • Journal of Korea Port Economic Association
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    • v.35 no.2
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    • pp.77-92
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    • 2019
  • As China's economic growth pole has shifted from the coastal area to the Midwest and the inland since the beginning of 2000, construction of China's inland ports was promoted in the coastal area. The inland port functions as offshore port, thereby streamlining import and export logistics and customs clearance and so on. The purpose of this study is to identify the competitiveness and potential of China's inland ports via functional and geographical classification, as well as SWOT-PEST analysis. According to the results of the study, inland ports can be functionally categorized as sea port-based, industrial-based, distribution-based and customs clearance-based. The majority of the sea port-based inland ports are located in the eastern part of China while industry-based and distribution-based inland ports are situated in the Midwest. On contrast, the inland ports in Northwest mainly perform the function of customs clearance to promote international trade with neighbouring countries. The inland ports in the eastern region have high competitiveness owing to a large volume of international trade in the region, whereas those in the Midwest have high potential. The 'One Belt to One Road' initiative proposed by the Xi's Government is expected to play a significant role in promoting the development of inland ports in the Midwest and border areas.

Image Evaluation by Metallic Hip Prosthesis in Computed Tomography Examination (컴퓨터단층촬영검사에서 고관절 삽입물에 의한 영상평가)

  • Min, Byung-In;Im, In-Chul
    • Journal of the Korean Society of Radiology
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    • v.16 no.3
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    • pp.281-288
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    • 2022
  • In this study, four algorithms (Soft, Standard, Detail, Bone) were used for general CT scan (Before MAR) images and MAR (After MAR) images for patients with metal implants inserted into the hip joint. was applied to compare and analyze Noise, SNR, and CNR to find out the optimal algorithm for quantitative evaluation. As the analysis method, Image J program, which can calculate image analysis and area and pixel values on the image reconstructed with four algorithms, was used. In order to obtain Noise, SNR, and CNR, the HU mean value and HU SD value were obtained by designating the bone (ischium) closest to the metal implant in the image for the measurement site, and the background noise was the surrounding muscle. The region of interest (ROI) was equally designated as 15 × 15 mm in consideration of the size of the bone, and the values of SNR and CNR were calculated according to the given equation. As a result, for noise, After MAR and Soft algorithms showed the lowest noise, and SNR and CNR showed the highest for Before MAR and Soft algorithms. Therefore, the soft algorithm is judged to be the most appropriate algorithm for metal implant hip joint CT.

Comparison of Angelica Species Roots Using Taste Sensor and DNA Sequencing Analysis (미각센서와 DNA 염기서열을 이용한 당귀류 비교)

  • Kim, Young Hwa;Choi, Goya;Lee, Hye Won;Lee, Gwan Ho;Chae, Seong Wook;Kim, Yun Hee;Lee, Mi Young
    • The Korea Journal of Herbology
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    • v.27 no.6
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    • pp.37-42
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    • 2012
  • Objectives : Angelica Gigantis Radix is prescribed as the root of different Angelica species on the pharmacopoeia in Korea, Japan and China. Chemical components and their biological activities were also different according to their species. A study for the development of simple method to compare Angelica roots was needed. In order to classify them, the methods such as DNA sequencing analysis and taste sensor were applied to three Angelica species like Angelica gigas, Angelica acutiloba and Angelica sinensis. Methods : PCR amplification of intergenic transcribed spacer (ITS) region was performed using ITS1 and ITS4 primer from nine Angelica roots, and then nucleotide sequence was determined. Taste pattern of samples were measured using the taste-sensing system SA402B equipped with a sensing unit, which consists of artificial lipid membrane sensor probes of anionic bitterness, astringency, saltiness, umami, and cationic bitterness (C00, AE1, CT0, AAE, and AN0, respectively). Results : As a result of comparing the similarity of the ITS region sequences, A. sinensis was discriminated from the others (A. gigas and A. acutiloba). Equally this genetic result, A. gigas and A. acutiloba showed similar taste pattern as compared to A. sinensis. Sourness, bitterness, aftertaste of bitterness, astringency, and aftertaste of astringency of A. sinensis were significantly high as compared with A. gigas and A. acutiloba. In contrast, richness was significantly low. Conclusions : These taste pattern can be used as a way of comparison of Angelica species and this technic could be applied to establish a taste pattern marker for standardization of herbs in various purposes.

Distribution and Change of Radon Concentration of Groundwater in the Area of Yeonpung-myeon, Goesan-gun, Korea (괴산군 연풍면 일대 지하수 중 라돈 함량 분포와 변동)

  • Byong-Wook Cho;Soo-Young Cho;Jong-Hyun Oh;Byeong-Dae Lee
    • The Journal of Engineering Geology
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    • v.33 no.4
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    • pp.587-598
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    • 2023
  • To assess the distribution and temporal changes in radon concentration within a region in Yeonpung-myeon, Goesan-gun, known for elevated groundwater radon levels, we conducted a series of analyses, measuring radon concentration and DTW (Depth to water table) at 2-month intervals over 12 cycles. The investigation covered 10 groundwater wells and one stream within the designated area. The groundwater in the central part of the region exhibited high radon concentrations, ranging from 37.0 to 2,675.2 Bq/L. Conversely, the peripheral zones displayed comparatively lower radon concentrations, ranging from 10.6 to 37.9 Bq/L. This variation is attributed to the presence of granite porphyry that intruded into the Okcheon Formation, forming a fracture zone and contributing to elevated radon levels in the central part. In contrast, the peripheral locations, located within the Okcheon Formation and away from the granite porphyry intrusion, demonstrated lower radon concentrations. The observed significant fluctuation in radon concentration in the central area is associated with its low-lying topography. The pronounced seasonal changes in groundwater levels contribute to the migration of shallow, low-radon groundwater into areas with higher radon concentrations, explaining the observed variations in radon levels within the central part of the studied area.

Various MRI Findings of Toxocara canis Myelitis (개회충 척수염의 다양한 자기공명영상 소견)

  • Sun Young Park;Kyung Seok Park;Eugene Lee;Joon Woo Lee;Yun Jung Bae;Yusuhn Kang;Joong Mo Ahn;Heung Sik Kang
    • Journal of the Korean Society of Radiology
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    • v.81 no.1
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    • pp.135-146
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    • 2020
  • Purpose To describe magnetic resonance imaging (MRI) findings in 10 cases of Toxocara canis myelitis and to analyze these findings to aid in the diagnosis of this condition. Materials and Methods From June 2015 to March 2018, we retrospectively analyzed the electronic medical records and MR images of patients who were diagnosed with Toxocara canis myelitis. The analysis of the MR images was based on a discussion between an experienced spinal radiologist and a radiology resident. Results This study classified MRI findings into the following two types. Type 1 was defined as central and diffuse T2 high signal intensity on the axial plane, which was observed in 50% of all cases. All lesions showed avid enhancement, mostly in the posterolateral or posterior region (4 cases, 80%). Type 2 was defined as wedge-shaped or focal T2 high signal intensity in the posterolateral or posterior region and corresponded to the remaining 50% of the cases. In this case, the extent of the lesion was relatively small and contrast enhancement was observed in only one case. Conclusion This study revealed that various imaging findings could be observed in cases of Toxocara canis myelitis, and the findings were classified into two types.

Comparison and Analysis of Web Accessibility for the Korea, USA, and Japan's Broadcast Web Sites (한·미·일 지상파 방송사의 웹 접근성 비교·분석)

  • Park, Seong-Je;Kim, Yung-Keun;Kim, Jong-Weon
    • Journal of Korea Society of Industrial Information Systems
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    • v.19 no.4
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    • pp.105-117
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    • 2014
  • Acquisition of information through the broadcast media is essential for modern life and each broadcaster has progressed its service over the internet with the development of digital technology. Under this circumstance, this study presented the results which compared and analyzed the web accessibility evaluation for Korea, USA, and Japan's leading broadcaster web sites. According to the study results, there was no significant difference in the level of accessibility in all web sites of three countries, but accessibility compliance rate such as alternate text, skip-navigation of repeated region, and title was somewhat insufficient for Korean web sites. In addition, accessibility errors in the brightness contrast of the text contents, the run of the functions that a user doesn't have any intention, the clear statement of the default language, and the label provision were investigated. Therefore, Korean broadcasters should urgently improve and modify these errors and problems for effective web accessibility.

Antimicrobial Activity of Bacteriophage Endolysin Produced in Nicotiana benthamiana Plants

  • Kovalskaya, Natalia;Foster-Frey, Juli;Donovan, David M.;Bauchan, Gary;Hammond, Rosemarie W.
    • Journal of Microbiology and Biotechnology
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    • v.26 no.1
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    • pp.160-170
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    • 2016
  • The increasing spread of antibiotic-resistant pathogens has raised the interest in alternative antimicrobial treatments. In our study, the functionally active gram-negative bacterium bacteriophage CP933 endolysin was produced in Nicotiana benthamiana plants by a combination of transient expression and vacuole targeting strategies, and its antimicrobial activity was investigated. Expression of the cp933 gene in E. coli led to growth inhibition and lysis of the host cells or production of trace amounts of CP933. Cytoplasmic expression of the cp933 gene in plants using Potato virus X-based transient expression vectors (pP2C2S and pGR107) resulted in death of the apical portion of experimental plants. To protect plants against the toxic effects of the CP933 protein, the cp933 coding region was fused at its Nterminus to an N-terminal signal peptide from the potato proteinase inhibitor I to direct CP933 to the delta-type vacuoles. Plants producing the CP933 fusion protein did not exhibit the severe toxic effects seen with the unfused protein and the level of expression was 0.16 mg/g of plant tissue. Antimicrobial assays revealed that, in contrast to gram-negative bacterium E. coli (BL21(DE3)), the gram-positive plant pathogenic bacterium Clavibacter michiganensis was more susceptible to the plant-produced CP933, showing 18% growth inhibition. The results of our experiments demonstrate that the combination of transient expression and protein targeting to the delta vacuoles is a promising approach to produce functionally active proteins that exhibit toxicity when expressed in plant cells.

Bacterial Diversity at Different Sites of the Digestive Tract of Weaned Piglets Fed Liquid Diets

  • Hong, Tran Thi Thu;Passoth, Volkmar;Lindberg, Jan Erik
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.6
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    • pp.834-843
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    • 2011
  • Bacterial diversity was studied using PCR-DGGE, cloning and sequencing. DNA was isolated from digesta samples from stomach, ileum and colon of 28 weaned piglets (Large White${\times}$Mong Cai) fed dry control feed, naturally fermented liquid feed (FE) and a liquid diet with inclusion of rice distiller's residue feed. General bacterial diversity was described using DGGE analysis of the V3 region of 16S rDNA. The microbial populations in the stomach and the ileum were considerably influenced by the diet, while only marginal effects were observed in the colon. There was a large variation of the microbial flora in the stomach between individuals fed non-fermented diets. In contrast, animals fed diet FE had a more uniform microbial flora in the stomach and the ileum compared to the other diets. In total 47 bands from the DGGE profiles were cloned. In stomach, most frequently lactic acid bacteria were found. Feeding diet FE resulted in the occurrence of Pediococcus species in stomach and ileum. In pigs fed the other diets, Lactobacillus gallinarum, Lactobacillus johnsonii and Lactobacillus fermentum were found in stomach and ileum. Most of the sequences of bands isolated from colon samples and several from ileum matched to unknown bacteria, which often grouped within Prevotellaceae, Enterobacteriaceae, Bacteroidaceae and Erysipelotrichaceae. This study demonstrates that fermented liquid feed affects bacterial diversity and the specific microflora in stomach and ileum, which provides a potential to modulate the gut microflora with dietary means to increase the abundance of beneficial bacteria and improve piglets' health.

Interaction of Cu(II)-meso-tetrakis(n-N-methylpyridiniumyl)porphyrin (n = 2,3,4) with Native and Synthetic Polynucleotides Probed by Polarized Spectroscopy

  • Lee, Mi-Jin;Lee, Gil-Jun;Lee, Dong-Jin;Kim, Seog-K.;Kim, Jong-Moon
    • Bulletin of the Korean Chemical Society
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    • v.26 no.11
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    • pp.1728-1734
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    • 2005
  • The interactions of Cu(II)-meso-Tetrakis(n-N-methylpyridiniumyl)porphyrin (n = 2,3,4), respectively referred to as o-, m- and p-CuTMPyP, and DNA, poly$[d(A-T)_2]$ and poly$[d(G-C)_2]$ were investigated by circular and linear dichroism (CD and LD). In the o-CuTMPyP case, in which the rotation of the pyridinium ring is prevented, the shape of the CD spectrum when associated to DNA and poly$[d(A-T)_2]$ resembles and is characterized by a positive band at a low drug to DNA concentration ratio (R ratio) and is bisignate at a high R ratio. The former CD spectrum shape has been attributed to porphyrin that is bound monomerically outside of DNA while the latter can be attributed to those that are stacked. When o-CuTMPyP is bound to poly$[d(G-C)_2]$, the excitonic CD appeared at a relatively high R ratio. In contrast, a characteristic negative CD band in the Soret region was apparent for both m- and p-CuTMPyP when bound to DNA and poly$[d(G-C)_2]$ at the low R ratios, indicating that the porphyrin molecule intercalates. However, the DNA is bent near the intercalation site and the plane of the porphyrin molecule tilts relative to the DNA helix axis, as judged by the magnitude of the reduced LD. Various stacking patterns were identified by the shape of the CD spectrum for m- and p-CuTMPyP when bound to poly$[d(A-T)_2]$. Three species for the former complex and two for the latter complex were found which may reflect the extent of the stacking.