• 제목/요약/키워드: re-sequencing

검색결과 90건 처리시간 0.311초

재가공형 숏폼 콘텐츠의 특성 연구 (A Study on the Characteristics of Re-Organized Shortform Contents)

  • 이진;윤현정;윤혜영
    • 한국콘텐츠학회논문지
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    • 제22권5호
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    • pp.67-80
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    • 2022
  • 본 연구는 미디어 기업이 중심이 되어 기존의 방송 콘텐츠를 짧은 분량으로 편집하여 서비스하는 재가공형 숏폼 콘텐츠의 의미와 특성을 밝힘을 목적으로 한다. 이를 위해 2014년부터 2021년까지 네이버 TV 플랫폼에 개설된 지상파 3사와 JTBC, tvN의 드라마 채널 전체 영상과 대표 예능 프로그램을 분석대상으로 선정하여 통시적, 공시적 접근을 동시에 진행하였다. 분석 결과 통시적 관점에서 드라마와 예능 프로그램 모두 제공 영상의 개수와 형태가 다양해지는 등 양적, 질적 확장이 이루어졌다. 특히 기획형 영상의 경우 캐릭터, 주제, 소재 중심의 계열화가 나타나는 등 독립적 콘텐츠로서의 의미 역시 강화되고 있었다. 썸네일과 제목 역시 검색의 태그이자 큐레이션 역할을 하는 파라텍스트로 정형화됨을 확인할 수 있었다. 공시적 관점에서는 실시간 조회수와 원본 영상과의 비교를 통해 재가공형 숏폼 콘텐츠가 독립적인 시청 맥락을 가진 콘텐츠이자 캐릭터 중심의 콘텐츠로 여겨지고 있음을 알 수 있었다. 본 연구는 부수적으로 여겨지던 숏폼 콘텐츠의 의미와 위상 변화를 포착하는 시도로 의의를 지닌다.

Characterizations of Broad Benn Wilt Virus isolated from Rehmania glutinosa Liboschitz

  • Park, In-Sook;Park, Min-Kyoung;Kim, Jong-Yeop;Lim, Ju-Rak;Lee, Kui-Jae;Lee, Wang-Hyu
    • 한국자원식물학회:학술대회논문집
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    • 한국자원식물학회 2002년도 제9차 국제심포지움 및 추계정기학술발표회
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    • pp.54-54
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    • 2002
  • The nucleotide sequence of a Korea isolate of broad bean wilt favavirus from Rehmannia glutinosa Lib., designated BBWV-RE, was determined. Direct amino acid sequencing of the virus coat proteins suggests that a comparison of several favaviruses in terms of nucleotide sequence and amino acid sequences showed that BBWV-2 isolates display high sequence identity. The small coat protein genes of RNA-2 were also determined for three other Japanese isolates(E, L, and 1-2) and two ATCC isolates(PV132 and PV176) of BBWV. the CP sequence suggested distinct evolution lineages. Serotype 2 favaviruses are more prevalent in Asia, Australia and North America, Wheres serotype 1 is more prevalent in europe.(중략)

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Sequence Analysis of the Internal Transcribed Spacer of Ribosomal DNA in the Genus Rhizopus

  • Park, You-Jung;Min, Byung-Re
    • Mycobiology
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    • 제33권2호
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    • pp.109-112
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    • 2005
  • The internal transcribed spacer (ITS) regions including the 3'-end of 18S rRNA gene, 5.8S rRNA gene and the 5'-end of the 28S rRNA gene of Rhizopus spp. were amplified by PCR and analyzed by DNASIS program. Length polymorphism of these region ranged from 564 bp in R. oryzae to 789bp in R. stolonifer. The length and sequence of 5.8S was very conserved with $154{\sim}155\;bp$. The sequence of ITS2 was more variable than that of ITS1. The base substitution rates were ranged from 0 to 0.6069 per site, and higher rate was found in R. stolonifer. In general, transition was usually more frequent than transversion. On the basis of sequencing results, four groups were clustered with value of 61.9% similarity; R. oryzae, R. micros pores, R. homothallicus, and R. stolonifer groups.

APPLICATIONS OF GRAPH THEORY

  • Pirzada, S.;Dharwadker, Ashay
    • Journal of the Korean Society for Industrial and Applied Mathematics
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    • 제11권4호
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    • pp.19-38
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    • 2007
  • Graph theory is becoming increasingly significant as it is applied of mathematics, science and technology. It is being actively used in fields as varied as biochemistry(genomics), electrical engineering(communication networks and coding theory), computer science(algorithms and computation) and operations research(scheduling). The powerful results in other areas of pure mathematics. Rhis paper, besides giving a general outlook of these facts, includes new graph theoretical proofs of Fermat's Little Theorem and the Nielson-Schreier Theorem. New applications to DNA sequencing (the SNP assembly problem) and computer network security (worm propagation) using minimum vertex covers in graphs are discussed. We also show how to apply edge coloring and matching in graphs for scheduling (the timetabling problem) and vertex coloring in graphs for map coloring and the assignment of frequencies in GSM mobile phone networks. Finally, we revisit the classical problem of finding re-entrant knight's tours on a chessboard using Hamiltonian circuits in graphs.

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Deciphering Macrophage Phenotypes upon Lipid Uptake and Atherosclerosis

  • Jihye Lee;Jae-Hoon Choi
    • IMMUNE NETWORK
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    • 제20권3호
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    • pp.22.1-22.21
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    • 2020
  • In the progression of atherosclerosis, macrophages are the key immune cells for foam cell formation. During hyperlipidemic condition, phagocytic cells such as monocytes and macrophages uptake oxidized low-density lipoproteins (oxLDLs) accumulated in subintimal space, and lipid droplets are accumulated in their cytosols. In this review, we discussed the characteristics and phenotypic changes of macrophages in atherosclerosis and the effect of cytosolic lipid accumulation on macrophage phenotype. Due to macrophage plasticity, the inflammatory phenotypes triggered by oxLDL can be re-programmed by cytosolic lipid accumulation, showing downregulation of NF-κB activation followed by activation of anti-inflammatory genes, leading to tissue repair and homeostasis. We also discuss about various in vivo and in vitro models for atherosclerosis research and next generation sequencing technologies for foam cell gene expression profiling. Analysis of the phenotypic changes of macrophages during the progression of atherosclerosis with adequate approach may lead to exact understandings of the cellular mechanisms and hint therapeutic targets for the treatment of atherosclerosis.

Monitoring conservation effects on a Chinese indigenous chicken breed using major histocompatibility complex B-G gene and DNA Barcodes

  • Tu, Yunjie;Shu, Jingting;Ji, Gaige;Zhang, Ming;Zou, Jianmin
    • Asian-Australasian Journal of Animal Sciences
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    • 제31권10호
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    • pp.1558-1564
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    • 2018
  • Objective: We report monitoring conservation effect for a Chinese indigenous chicken (Langshan) breed using major histocompatibility complex (MHC) and DNA barcords. Methods: The full length of MHC B-G gene and mitochondrial cytochrome oxidase I (COI) gene in generations 0, 5, 10, 15, 16, and 17 was measured using re-sequencing and sequencing procedures, respectively. Results: There were 292 single nucleotide polymorphisms of MHC B-G gene identified in six generations. Heterozygosity (He) and polymorphic information content (PIC) of MHC B-G gene in generations 10, 15, 16, and 17 remained stable. He and PIC of MHC B-G gene were different in six generations, with G10, G15, G16, G17 >G5>G0 (p<0.05). For the COI gene, there were five haplotypes in generations 0, 5, 10, 15, 16, and 17. Where Hap2 and Hap4 were the shared haplotypes, 164 individuals shared Hap2 haplotypes, while Hap1 and Hap3 were the shared haplotypes in generations 0 and 5 and Hap5 was a shared haplotype in generations 10, 15, 16, and 17. The sequence of COI gene in 6 generations was tested by Tajima's and D value, and the results were not significant, which were consistent with neutral mutation. There were no differences in generations 10, 15, 16, and 17for measured phenotypic traits. In other generations, for annual egg production, with G5, G10, G15, G16, G17>G0 (p<0.05). For age at the first egg and age at sexual maturity, with G10, G15, G16, G17>G5>G0 (p<0.05). Conclusion: Combined with the results of COI gene DNA barcodes, MHC B-G gene, and phenotypic traits we can see that genetic diversity remained stable from generations 10 to 17 and the equimultiple random matching pedigrees conservation population conservation effect of Langshan chicken was effective as measured by these criteria.

EST Knowledge Integrated Systems (EKIS): An Integrated Database of EST Information for Research Application

  • Kim, Dae-Won;Jung, Tae-Sung;Choi, Young-Sang;Nam, Seong-Hyeuk;Kwon, Hyuk-Ryul;Kim, Dong-Wook;Choi, Han-Suk;Choi, Sang-Heang;Park, Hong-Seog
    • Genomics & Informatics
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    • 제7권1호
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    • pp.38-40
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    • 2009
  • The EST Knowledge Integrated System, EKIS (http://ekis.kribb.re.kr), was established as a part of Korea's Ministry of Education, Science and Technology initiative for genome sequencing and application research of the biological model organisms (GEAR) project. The goals of the EKIS are to collect EST information from GEAR projects and make an integrated database to provide transcriptomic and metabolomic information for biological scientists. The EKIS constitutes five independent categories and several retrieval systems in each category for incorporating massive EST data from high-throughput sequencing of 65 different species. Through the EKIS database, scientists can freely access information including BLAST functional annotation as well as Genechip and pathway information for KEGG. By integrating complex data into a framework of existing EST knowledge information, the EKIS provides new insights into specialized metabolic pathway information for an applied industrial material.

PCR-RFLP and Sequence Analysis of the rDNA ITS Region in the Fusarium spp.

  • Min, Byung-Re;Lee, Young-Mi;Choi, Yong-Keel
    • Journal of Microbiology
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    • 제38권2호
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    • pp.66-73
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    • 2000
  • To investigate the genetic relationship among 12 species belonging to the Fusarium section Martiella, Dlaminia, Gibbosum, Arthrosporiella, Liseola and Elegans, the internal transcribed spacer(ITS) regions of ribosomal DNA (rDNA) were amplified with primer pITS1 and pITS4 using the polymerase chain reaction(PCR). After the amplified products were digested with 7 restriction enzymes, restriction fragment length polymorphism (RFLP) patterns were analyzed. The partial nucleotide sequences of the ITS region were determined and compared. Little variation was observed in the size of the amplified product having sizes of 550bp or 570bp. Based on the RFLP analysis, the 12 species studied were divided into 5 RFLP types. In particular, strains belonging to the section Martiella were separated into three RFLP types. Interestingly, the RFLP type of F. solani f. sp. piperis was identical with that of isolates belonging to the section Elegans. In the dendrogram derived from RFLP analysis of the ITS region, the Fusarium spp. examined were divided into two major groups. In general, section Martiella excluding F. solani f. sp. piperis showed relatively low similarity with the other section. The dendrogram based on the sequencing analysis of the ITS2 region also gave the same results as that of the RFLP analysis. As expected, 5.8S, a coding region, was highly conserved, whereas the ITS2 region was more variable and informative. The difference in the ITS2 region between the length of F. solani and its formae speciales excluding F. solani f. sp. piperis and that of other species was caused by the insertion/deletion of nucleotides in positions 143-148 and 179-192.

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Evaluation of the microbiome composition in particulate matter inside and outside of pig houses

  • Hong, Se-Woon;Park, Jinseon;Jeong, Hanna;Kim, Minseok
    • Journal of Animal Science and Technology
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    • 제63권3호
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    • pp.640-650
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    • 2021
  • Particulate matter (PM) produced in pig houses may contain microbes which can spread by airborne transmission, and PM and microbes in PM adversely affect human and animal health. To investigate the microbiome in PM from pig houses, nine PM samples were collected in summer 2020 inside and outside of pig houses located in Jangseong-gun, Jeollanam-do Province, Korea, comprising three PM samples from within a nursery pig house (I-NPH), three samples from within a finishing pig house (I-FPH), and three samples from outside of the pig houses (O-PH). Microbiomes were analyzed using 16S rRNA gene amplicon sequencing. Firmicutes was the most dominant phylum and accounted for 64.8%-97.5% of total sequences in all the samples, followed by Proteobacteria (1.4%-21.8%) and Bacteroidetes (0.3%-13.7%). In total, 31 genera were represented by > 0.3% of all sequences, and only Lactobacillus, Turicibacter, and Aerococcus differed significantly among the three PM sample types. All three genera were more abundant in the I-FPH samples than in the O-PH samples. Alpha diversity indices did not differ significantly among the three PM types, and a principal coordinate analysis suggested that overall microbial communities were similar across PM types. The concentration of PM did not significantly differ among the three PM types, and no significant correlation of PM concentration with the abundance of any potential pathogen was observed. The present study demonstrates that microbial composition in PM inside and outside of pig houses is similar, indicating that most microbe-containing PM inside pig houses leaks to the outside from where it, along with microbe-containing PM on the outside, may re-enter the pig houses. Our results may provide useful insights regarding strategies to mitigate potential risk associated with pig farming PM and pathogens in PM.