• 제목/요약/키워드: rbcL sequence

검색결과 65건 처리시간 0.026초

Re-evaluation of green tide-forming species in the Yellow Sea

  • Kang, Eun Ju;Kim, Ju-Hyoung;Kim, Keunyong;Choi, Han-Gu;Kim, Kwang Young
    • ALGAE
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    • 제29권4호
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    • pp.267-277
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    • 2014
  • Green tides occur every year in the Yellow Sea (YS), and numerous investigations are proceeding on various aspects of the phenomenon. We have identified bloom-forming species collected from diverse locations in the YS using morphological traits and the chloroplast gene for the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL). Morphological and rbcL sequence data analyses characterized the blooming species on both sides of the YS as belonging to the Ulva linza-procera-prolifera (LPP) complex clade or U. prolifera of earlier reports. However, U. procera within the LPP complex must be regarded as synonym of U. linza. Moreover, U. prolifera in free-floating samples collected from the Qingdao coast in 2009 was clearly in a distinct clade from that of the blooming species. Therefore, U. linza is the main green tide alga in the YS and has the procera-morphology. The green drift mats in the southeastern part of the YS (southwest sea of Korea) consisted predominantly of U. linza and rarely of U. compressa or U. prolifera.

Morphology and molecular study of Pterosiphonia arenosa sp. nov. (Rhodomelaceae, Rhodophyta) from Jeju Island, Korea

  • Kim, Myung Sook;Kim, Su Yeon;Yang, Mi Yeon;Kim, Byeongseok;Diaz-Tapia, Pilar
    • ALGAE
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    • 제27권4호
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    • pp.259-268
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    • 2012
  • The genus Pterosiphonia is composed of 22 species worldwide and four of these species have been reported in the North-East Asia. In Korea, P. pennata originally described from the Mediterranean Sea has been previously recorded from the southern coast as a widespread species. In order to confirm the same species from Korea and Mediterranean, we observed the morphology of Korean Pterosiphonia specimen and analyzed rbcL sequences for inferring phylogenetic relationships among similar congeners. Korean entity was recognized as a new species, Pterosiphonia arenosa sp. nov. The new species is characterized by ecorticate axes with 7-10 pericentral cells, branches formed every two segments, and coalesced with main axis over 1-1.25 axial segments, and tetrasporangia formed in straight series on determinate branches of the upper parts of erect axes. A phylogenetic analysis of rbcL sequences demonstrated that P. arenosa was distinct from P. pennata found in Spain as well as other species. In conclusion, morphological and molecular sequence data indicated that P. arenosa sp. nov. has been previously misidentified as P. pennata in Korea.

Taxonomic revision of the genus Herposiphonia (Rhodomelaceae, Rhodophyta) from Korea, with the description of three new species

  • Koh, Young Ho;Kim, Myung Sook
    • ALGAE
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    • 제33권1호
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    • pp.69-84
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    • 2018
  • We examined the species diversity of Herposiphonia on Korean coasts, based on a combination of morphology and molecular analyses of the mitochondrial COI-5P DNA barcode marker and plastid rbcL gene. We report the presence of eight species including three novel species: H. donghaensis sp. nov., H. jejuinsula sp. nov., H. sparsa sp. nov., H. caespitosa, H. fissidentoides, H. insidiosa, H. parca, and H. subdisticha. Specimens were separated into eight clades in both the COI-5P and rbcL gene analyses, with 1.3-19.6 and 6.6-15% interspecific sequence divergence, respectively. These eight species are also distinguishable by several morphological characteristics such as: branching pattern (d/i pattern in H. donghaensis sp. nov. and H. sparsa sp. nov.; d/d/d/i pattern in others), shape of determinate branch (ligulate in H. fissidentoides; terete in others), number of vegetative trichoblasts (1-2 in H. insidiosa and H. sparsa sp. nov.; 3-4 in H. caespitosa; absent in others), and number of segments and pericentral cells in determinate branches. About three novel species revealed by our analyses, H. donghaensis sp. nov. is newly discovered, and H. jejuinsula sp. nov. and H. sparsa sp. nov. were previously reported in Korea as H. nuda and H. secunda, respectively. Our results show that DNA barcoding and rbcL analyses are useful for delimiting species boundaries and discovering cryptic species diversity in the genus Herposiphonia.

한국 남서해안 자연채묘 양식 김의 DNA 염기서열과 종 동정 (DNA Sequences and Identification of Porphyra Cultivated by Natural Seeding on the Southwest Coast of Korea)

  • 황미숙;김선미;하동수;백재민;김형섭;최한구
    • ALGAE
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    • 제20권3호
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    • pp.183-196
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    • 2005
  • Nuclear SSU and ITS1 rDNA and plastid rbcL sequences were determined to identify the seven samples of Porphyra cultivated by means of natural seeding on the southwest coast of Korea and analyzed to access the phylogenetic relationships of them with the natural populations of P. tenera and P. yezoensis from Korea and Japan. SSU, rbcL and ITS1 data from 18, 21 and 31 samples, respectively, including previously published sequences were investigated in the study. Results from our individual and combined data indicated that the seven samples were all P. yezoensis and the entities except one from Muan 2 aquafarm strongly grouped together with the natural populations of P. yezoensis from the south and the west coast of Korea. The sample from Muan 2 seems to be derived from a strain of P. yezoensis introduced from Japan by Porphyra farmers, based on DNA sequence data.

Morphology and phylogenetic position of a freshwater Prasiola species (Prasiolales, Chlorophyta) in Korea

  • Kim, Moon Sook;Jun, Man-Sig;Kim, Cho A;Yoon, Jihae;Kim, Jin Hee;Cho, Ga Youn
    • ALGAE
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    • 제30권3호
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    • pp.197-205
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    • 2015
  • The genus of leafy green algae, Prasiola Meneghini, includes marine, terrestrial, and freshwater species. A total of 11 species and one variety have been identified in China, Korea, and Japan. In Korea, Prasiola formosana var. coreana has been reported in Muncheon, North Korea, while a different type of Prasiola species has been reported in South Korea. The South Korean species has been found growing along a small stream originating from Chodanggul Cave, a limestone cave in Samcheok, Gangwon Province. Here, we revised the morphological characteristics of the South Korean Prasiola species and analyzed plastid rbcL, psaB, and tufA genes to clarify its identity. Although the external and anatomical morphologies varied among individuals, our results were very similar to previous reports. Plastid three genes sequences of the South Korean specimens were identical to those of P. japonica collected from Japan as well as to published sequences of P. yunnanica from China. A short rbcL-3P sequence (196 bp) from P. formosana var. coreana, which was identified in the type specimen, was also identical to a sequence from P. japonica. These Prasiola species and variety from Korea, Japan, and China are all distributed in areas characterized by limestone bedrock. Based on morphological, phylogenetic, and distributional features, the South Korean Prasiola species is regarded herein as P. japonica. Here, we also propose to synonymize P. formosana var. coreana and P. yunnanica with P. japonica.

Thorea indica sp. nov. (Thoreales, Rhodophyta) from Uttar Pradesh, India

  • Necchi, Orlando Jr;Paiano, Monica O.;West, John A.;Ganesan, E. K.;Goer, Susan Loiseaux-de
    • ALGAE
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    • 제30권4호
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    • pp.265-274
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    • 2015
  • Thorea indica sp. nov. is described from the Sai River, Uttar Pradesh, India (26°39′00.7″ N, 80°47′38.3″ E). Its classification is based on molecular sequences of the plastid-encoded RuBisCO large-subunit gene, rbcL and the barcode region of the mitochondrial encoded cytochrome c oxidase subunit 1, cox1, and morphological data. The sequence analyses confirm a new species of Thorea. The cox1 barcode sequence had 90.4-90.8% identity with Thorea sp. from Australia and Thorea hispida from Hawaii and China. Based on rbcL sequences the Indian specimen was positioned in a major clade with high support (>95 bootstrap and 0.95 posterior probability) containing two other species: T. okadae from Japan and T. hispida from the continental USA, Hawaii, the UK, and China. The divergences among these sequences were T. indica vs. T. okadae (2.8%) and T. indica vs. T. hispida (2.9-3.4%). The comparison of morphological characters of Thorea from India was not conclusive due to the inadequate descriptions in previous reports: most specimens reported as T. hispida fit within the circumscription of T. indica as described here. The previous report of T. siamensis from the Sai River is incorrect and the specimens fit within our description of T. indica. Thorea indica and T. okadae can be distinguished by minor morphometric characters and sexuality (dioecious vs. monoecious).

A new distribution record of Chrysosplenium grayanum Maxim. (Saxifragaceae) in Korea: Evidence from morphological and molecular data

  • Choi, Ji-Eun;In, Kyung-Ho;Kim, Bong Seok;Kim, Kyeonghee;Kim, Jin-Seok;Kim, Yong-In;Lee, Byoung Yoon;Lim, Chae Eun
    • Journal of Species Research
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    • 제9권1호
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    • pp.46-55
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    • 2020
  • Chrysosplenium grayanum Maxim. (Series Nepalensia), which had been known to be restricted to Japan, was newly discovered from Mt. Cheongtae in Yeonggwang-gun, Jeollanam-do, located in the southern part of the Korean Peninsula. Species identification was confirmed using morphological characteristics and DNA sequence data, while comparing with materials obtained from Japan and herbarium specimens. Chrysosplenium grayanum is clearly distinguished from the remaining taxa of the genus Chrysosplenium by having glabrous plant body, opposite leaves, cylindrical papillae with roundish head at the tip on the smooth seed surface, and four stamens. Molecular sequence data of the nuclear ribosomal ITS regions, chloroplast rbcL and matK genes strongly supported that this previously unknown Chrysosplenium species from Korea is C. grayanum. Taking the molecular and the morphological evidence into consideration, it is clear that newly discovered Chrysosplenium population in Korea is conspecific with the widely distributed C. grayanum in Japan. In this paper, we provide a description, illustration, and photo images of Chrysosplenium grayanum from Korea and also a key to the Chrysosplenium species in Korea.

Identification of three independent fern gametophytes and Hymenophyllum wrightii f. serratum from Korea based on molecular data

  • LEE, Chang Shook;LEE, Kanghyup;HWANG, Youngsim
    • 식물분류학회지
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    • 제50권4호
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    • pp.403-412
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    • 2020
  • Colonies of three independent gametophytes (one that is filamentous and two that are ribbon-like) without sporophytes occur in Gyeonggi-do, Gangwon-do, Gyeongsang-do, and Jeju-do, Korea. They have a moss-like appearance at first sight, with tiny plantlets and gemmae, and grow in cool, shaded, relatively deep dint places of large rocks, such as the small caves in high mountains, close to valleys. The gametophytes were identified based on morphological and molecular data by chloroplast DNA (cpDNA) sequence data (rbcL, rps4 gene and rps4-trnS intergenic spacer). Here, rbcL, rps4 gene and rps4-trnS intergenic spacer data of one independent gametophyte distributed in Korea have the same morphology, DNA sequence and monophyletic group as Crepidomanes intricatum from the eastern United States. They also share the same cpDNA data with Crepidomanes schmidtianum recently reported from Korea. The other independent gametophyte should be Hymenophyllum wrightii based on cpDNA data. The last one was presumed to be Pleurosoriopsis makinoi based on molecular data. The taxonomic status was confirmed to be the forma of Hymenophyllum wrightii through a revision of Hymenophyllum wrightii f. serratum based on molecular data.

Taxonomic re-examination of a carpet-like Codium (Chlorophyta) from Jeju, Korea

  • Lee, Hyung-Woo;Kim, Myung-Sook
    • ALGAE
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    • 제26권3호
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    • pp.221-227
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    • 2011
  • There are three carpet-like Codium species with a broadly expanded thallus reported from Korea and Japan: C. latum Suringar, C. tapetum Y. Lee, and C. tenuifolium Shimada, Tadano and J. Tanaka. During surveys of green algal diversity, we encountered a Codium species with carpet-like thalli from several sites on Jeju Island. To confirm the taxonomic identity of these specimens, we studied the morphological features and obtained rbcL gene sequences. The morphological and sequence data indicated that the carpet-like Codium specimens from Jeju are C. tenuifolium from Japan, but distant from Japanese C. latum. We propose that the carpet-like specimens from Jeju should be renamed C. tenuifolium, instead of C. tapetum or C. latum. C. tenuifolium is characterized by a tenuous, carpet-like and erect thallus with a very short and slightly compressed stipe arising from a discal holdfast, sub-pyriform and clavate utricles with a tumid and swollen apical head, and globular or sub-globular gametangia issued at the basal portion of the utricles.