• 제목/요약/키워드: rbcL

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Verifying a new distribution of the genus Amalthea (Halymeniales, Rhodophyta) with description of A. rubida sp. nov. from Korea

  • Lee, Hyung Woo;Yang, Mi Yeon;Kim, Myung Sook
    • ALGAE
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    • 제31권4호
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    • pp.341-349
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    • 2016
  • The red algal genus Amalthea was first described from New Zealand with one species, A. freemaniae. We discovered a new species of Amalthea from Korea, Amalthea rubida sp. nov., and described it based on morphology and rbcL sequences. A. rubida is characterized by a foliose, membranous and soft thallus having loosely arranged anticlinal medullary filaments, much like A. freemaniae, except for a difference of the cortex thickness in the basal part of vegetative structure. In the rbcL phylogenetic analyses, A. rubida formed a clade with A. freemaniae from New Zealand and Halymenia abyssicola from Mexico. A. rubida showed 5.7% interspecific divergence to A. freemaniae and 4.7% to H. abyssicola. Our discovery of A. rubida expands the distribution of Amalthea from the oceanic southwestern Pacific into the continental northwestern. A targeted global study is needed to fully reveal the species diversity and phylogenetic relationships of the genus Amalthea and members of the order Halymeniales.

Ralfsia longicellularis (Ralfsiales, Phaeophyceae): a Far East Asian endemic brown alga from Korea

  • Oteng'o, Antony Otinga;Won, Boo Yeon
    • 환경생물
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    • 제38권1호
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    • pp.101-105
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    • 2020
  • Ralfsia longicellularis is known as an endemic species in Far East Asia. In this study, we report R. longicellularis as a new record from Korea based on morphological and molecular analyses. Molecular analyses based on plastid-encoded rbcL gene sequences and morpho-anatomical studies were undertaken on Ralfsia species, a poorly studied genus from Korea. Ralfsia longicellularis is mainly characterized by a dark brown thallus; 770-1200 ㎛ thick, curved cells in the creeping and ascending parts of the filaments; basal layer and erect filament cells with a width-to-length ratio of 1 : 1.5 to 10; narrowshaped sporangia on-stalk cells at the base of the paraphyses; and mostly uniseriate plurilocular reproductive organs capped with 1-2 sterile cells. The R. longicellularis samples from Korea in this study were similar to ones collected from the type locality (Peter the Great Bay, Russia) in morphology. The rbcL analyses also revealed that our Korean R. longicellularis samples were placed in the same clade with Russian materials, within a Ralfsia clade but distinct from the congeners.

First Record of Cladosiphon umezakii (Ectocarpales, Phaeophyceae)in Korea

  • Cho, Ga-Youn;Boo, Sung-Min
    • ALGAE
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    • 제24권2호
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    • pp.79-83
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    • 2009
  • Recently deschbed new species, Cladosiphon umezakii Ajisaka (Ectocarpales,Phaeophyceae) is reported in Korea based on morphology and plastid rbcL sequences. Cladosiphon umezakii occurred on low intertidal to subtidal zone along the south and southeast coasts in Korea. Thalli are gold to dark brown, ercct, cylindrical, irregularly branched,and very mucoid. Unitocular zoidangium is developed at the base uf assimilatory filaments. Assimilatory filaments are very long. Eight specimens of the pecies collected from Korea clustered with those of C. umezakii in Japan in rbcL tree. The pecies showed a sister relationship with C. okamuranus. The occurrence of this warm water species is thought an example of northward migration of marine algae caused by global warming. Because C. umezakii is of the economica! importance of the genus as foods and medidnes, the study on mass culture of the species is necessary in korea.

Cryptic species diversity of ochtodenes-producing Portieria species (Gigartinales, Rhodophyta) from the northwest Pacific

  • Yang, Mi Yeon;Kim, Myung Sook
    • ALGAE
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    • 제33권3호
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    • pp.205-214
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    • 2018
  • Red algae in the genus Portieria produce secondary halogenated monoterpenes, which are effective deterrents against herbivores, as secondary metabolites. Portieria hornemannii samples from various sites contain different concentrations of these metabolites, suggesting the existence of genetic diversity and cryptic species. To evaluate the genetic diversity and species distribution of Portieria in the northwest Pacific, we analyzed rbcL sequences of samples collected from Korea, Japan, and Taiwan. The phylogenetic analysis revealed five distinct lineages at the species level. One was recognized as Portieria japonica and the others were cryptic lineages in P. hornemannii. The rbcL haplotypes of P. japonica were genetically fragmented into two subgroups of geographic origin; Korean and Japanese. The four cryptic lineages within P. hornemannii were also geographically structured at a much finer scale. These results suggest that different genetic lineages in Portieria evolved from variable microhabitats, consequently influencing secondary metabolites. Further study is required to resolve the relationships between genetic and secondary metabolite variations in Portieria.

Intake and blood concentrations of folate and their association with health-related behaviors in Korean college students

  • Jang, Han-Byul;Han, Young-Hee;Piyathilake, Chandrika J.;Kim, Heon;Hyun, Taisun
    • Nutrition Research and Practice
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    • 제7권3호
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    • pp.216-223
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    • 2013
  • The purpose of this study is to assess folate intake, and serum and red blood cell (RBC) folate concentrations, and investigate the association between folate status and health-related behaviors among Korean college students. A total of 169 students, aged between 18 and 27 years, participated in this study. Dietary intake data were collected by trained interviewers using a 24-hour recall method for three non-consecutive days in 2009. Information on health-related behaviors was obtained by a self-administered questionnaire. Serum and RBC folate concentrations were measured by microbiological assay. The average intakes of folate were $456{\mu}gDFE$ and $347{\mu}gDFE$ in male and female students, respectively. While the average serum folate concentration was significantly lower in male students (8.9 ng/mL) compared to female students (12.5 ng/mL), RBC concentrations were not significantly different between male (398.6 ng/mL) and female students (405.3 ng/mL). In male students, low serum folate concentrations were associated with total folate intake less than the Estimated Average Requirement, non-use of folic acid supplements, smoking, alcohol drinking at least once a week and low physical activity. In female students, low serum folate concentrations were associated with smoking and alcohol drinking at least two drinks at a time and BMI ${\geq}25$. Alcohol drinking and low physical activity were also associated with low RBC folate concentrations in both male and female students. In order to improve folate nutritional status of college students, the practice of desirable health-related behaviors, such as non-smoking, moderate alcohol drinking, regular physical activity, and maintenance of healthy BMI should be encouraged along with consumption of folate-rich foods and supplements.

무산소-RBC 공정을 이용한 질소제거 특성 및 동력학적 인자 도출 (Characteristics and Biological Kinetics of Nitrogen Removal in Wastewater using Anoxic-RBC Process)

  • 최명섭;손인식
    • 한국환경과학회지
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    • 제12권10호
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    • pp.1085-1093
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    • 2003
  • This study was conducted to investigate anoxic-RBC (rotating biological contactor) and its application in advanced municipal wastewater treatment process to remove biologically organics and ammonia nitrogen. Effluent COD and nitrogen concentration increased as the increase of volumetric loading rate. But, the concentration changes of NO$_2$$\^$-/ -N and NO$_3$$\^$-/ -N were little, as compared to COD and NH$_4$$\^$+/ -N. When the volumetric loading rate increased, COD removal efficiency and nitrification appeared very high as 96.7∼98.8% and 92.5∼98.8%, respectively. However, denitrification rate decreased to 76.2∼88.0%. These results showed that the change of volumetric loading rate affected to the denitrification rate more than COD removal efficiency or nitrification rate. The surface loading rates applied to RBC were 0.13~6.0lg COD/㎡-day and 0.312∼1.677g NH$_4$$\^$+/-N㎡-day and they were increased as the increase of volumetric loading rate. However, the nitrification rate showed higher than 90%. The thickness of the biofilm in RBC was 0.130 ∼0.141mm and the density of biofilm was 79.62∼83.78mg/㎤. They were increased as surface loading rate increased. From batch kinetic tests, the k$\_$maxH/ and k$\_$maxN/ were obtained as 1.586 g C/g VSS-day, and 0.276 g N/g VSS-day, respectively. Kinetic constants of denitrifer in anoxic reactor, Y, k$\_$e/, K$\_$s/, and k were 0.678 mg VSS/mg N, 0.0032 day$\^$-1/, 29.0 mg N/l , and 0.108 day$\^$-l/, respectively. P and K$\_$s/, values of nitrification and organics removal in RBC were 0.556 g N/㎡-day and 18.71 g COD/㎡-day, respectively.

엽록체 DNA 염기서열 분석을 이용한 한국산 초롱꽃과 (Campanulaceae)의 계통유연관계 (Phylogenetic relationships of Korean campanulaceae based on chloroplast DNA sequences)

  • 김경아;유기억
    • 식물분류학회지
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    • 제42권4호
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    • pp.282-293
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    • 2012
  • 한국산 초롱꽃과 8속 28분류군과 외군 2분류군 등 총 30분류군에 대한 계통유연관계를 알아보기 위하여 엽록체 DNA의 atpB, atpB-rbcL, atpF-H, matK, rbcL, rpl16, rpoC1 그리고 trnL-F 지역의 염기서열 분석을 실시하였다. 8개 유전자 지역의 염기서열 자료를 융합하여 분석한 결과 도라지속과 더덕속이 가장 기부에 분계조를 형성하였고 애기도라지속과 초롱꽃속은 각각 독립적으로 유집되었다. 홍노도라지속과 영아자속은 잔대속-금강초롱꽃속 분계조를 위한 자매군을 형성하였으며, 금강초롱꽃속은 잔대속의 모시대절과 분계조를 형성하였고 잔대속은 크게 하나의 군을 형성하였다. 본 연구에서 다룬 엽록체 DNA 8개 지역의 염기서열 자료에 기초한 한국산 초롱꽃과의 계통분석 결과, 속 수준에서의 구분은 가능하였으나 절 또는 계열 등 잔대속 내에서의 일부 분류계급은 형태 형질에 의한 분류체계와 일치하지 않았다.

DNA 바코드 분석을 통한 패장 기원종 감별용 분자 마커 개발 (Development of Molecular Marker for the authentication of Patriniae Radix by the analysis of DNA barcodes)

  • 김욱진;지윤의;이영미;강영민;최고야;김호경;문병철
    • 대한본초학회지
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    • 제29권6호
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    • pp.45-53
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    • 2014
  • Objectives : Due to the morphological similarity of in the roots of herbal medicine, the official herbal medicine is very difficult to authenticate between the original plants of Patriniae Radix and two adulterant Patrinia species. Therefore, we introduced DNA barcode analysis to establish a powerful tool for the authentication of Patriniae Radix from its adulterants. Methods : To analyze DNA barcode regions, genomic DNA was extracted from twenty-nine specimens of Patrinia scabiosaefolia, Patrinia villosa, Patrinia saniculifolia, and Patrinia rupestris, and internal transcribed spacer 2(ITS2), matK and rbcL genes were amplified. For identification of species specific sequences, a comparative analysis was performed by the ClastalW based on entire sequences of ITS2, matK and rbcL genes, respectively. Results : In comparison of three DNA barcode sequences, we identified 22, 22, and 12 species-specific nucleotides enough to distinguish each four species from ITS2, matK and rbcL gene, respectively. The sequence differences at the corresponding positions were available genetic marker nucleotides to discriminate the correct species among analyzed four species. These results indicated that comparative analysis of ITS2, matK and rbcL genes were useful genetic markers to authenticate Patriniae Radix. Conclusions : The marker nucleotides enough to distinguish P. scabiosaefolia, P. villosa, P. saniculifolia, and P. rupestris, were obtained at 22 SNP marker nucleotides from ITS2 and matK DNA barcode sequences, but they were confirmed at 12 SNP marker nucleotides from rbcL. These differences could be used to authenticate Patriniae Radix from its adulterants as well as discriminating each four species.

Molecular Classification of the Genus Grateloupia (Halymeniaceae, Rhodophyta) in Korea

  • Lee, Ju-Il;Kim, Hyung-Geun;Geraldino, Paul John L.;Hwang, Il-Ki;Boo, Sung-Min
    • ALGAE
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    • 제24권4호
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    • pp.231-238
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    • 2009
  • The genus Grateloupia is the largest with more than 96 currently recognized species in the family Halymeniaceae, but morphological features of the genus are highly homoplasious making species identification difficult. In this study, we analyzed rbcL gene from 34 samples collected in Korea and compared the haplotypes of Korean species with those already published. The rbcL tree confirmed the occurrence of eight species in Korea: G. asiatica, G. catenata, G. divaricata, G. elliptica, G. imbricata, G. lanceolata, G. subpectina, and G. turuturu. All, except G. asiatica and G.catenata, been introduced from their native northeastern Asian waters to Australasian, European, and North American waters. The introduced haplotypes of G. lanceolata in Europe and North America were absent in Korea, while haplotype sharing of G. turuturu in Korea and Europe was common. Further sampling will show a source population of each introduced species and also provide a correct list of Grateloupia from Korea, including the other remaining 11 species of the genus.