• 제목/요약/키워드: protein

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단백질 상호작용 데이터의 효율적 관리와 자동 갱신을 위한 시스템 설계와 구현 (System Design and Implementation for the Efficient Management and Automatic Update of Protein-Protein Interaction Data.)

  • 김기봉
    • 생명과학회지
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    • 제18권3호
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    • pp.318-322
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    • 2008
  • 단백질 상호작용 관련 데이터들이 기하급수적으로 증가하고 있는데 그러한 데이터들을 수동으로 갱신하고 관리하는 작업은 엄청나게 많은 시간과 노력을 요구한다. 뿐만 아니라 개발자가 아닌 비전문가인 생물학자들이 시스템 구성 데이터베이스들을 갱신하고 관리하며 분석 시스템을 운영한다는 것은 현실적으로 거의 불가능하다. 이러한 측면에서 단백질 상호작용 정보를 이용한 효율적인 단백질 기능분석 시스템인 WASPIFA에 대해 자동적으로 데이터를 갱신하고 관리할 수 있는 시스템을 설계하고 개발하였다. WASPIFA 시스템은 단백질의 상호작용 관련 데이터들을 통합하여 사용자가 편리하게 데이터를 검색할 수 있으며 단백질 상호작용에 관련된 정보 즉, 기능 및 주석 정보, 도메인 정보, 도메인 간의 상호 작용 정보 등을 제공해 주는 유용한 단백질 기능분석 시스템이다.

Effect of dietary protein and lipid level on growth, feed utilization, and muscle composition in golden mandarin fish Siniperca scherzeri

  • Sankian, Zohreh;Khosravi, Sanaz;Kim, Yi-Oh;Lee, Sang-Min
    • Fisheries and Aquatic Sciences
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    • 제20권5호
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    • pp.7.1-7.6
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    • 2017
  • A feeding trial was designed to assess the effects of dietary protein and lipid content on growth, feed utilization efficiency, and muscle proximate composition of juvenile mandarin fish, Siniperca scherzeri. Six experimental diets were formulated with a combination of three protein (35, 45, and 55%) and two dietary lipid levels (7 and 14%). Each diet was fed to triplicate groups of fish ($8.3{\pm}0.1g$) to apparent satiation for 8 weeks. The results showed that growth performance in terms of weight gain (WG) and specific growth rate (SGR) increased with increasing dietary protein level from 35 to 55% at the same dietary lipid level. At the same dietary lipid content, WG and SGR obtained with diets containing 55% protein was significantly higher than those obtained with diets containing 45 and 35% protein. No significant effect on growth rate was found when the dietary level of lipid was increased from 7 to 14%. While the levels of protein and lipid in the diets had no significant effect on feed intake, other nutrient utilization efficiency parameters including daily protein intake (DPI), feed efficiency (FE), and protein efficiency ratio (PER) showed a similar trend to that of growth rates, with the highest values obtained with diets containing 55% protein. Muscle chemical composition was not significantly affected by the different dietary treatments for each dietary lipid or protein level tested. These findings may suggest that a practical diet containing 55% protein and 7% lipid provides sufficient nutrient and energy to support the acceptable growth rates and nutrient utilization of mandarin fish juveniles.

단백질 상호작용 추론 및 가시화 시스템 (A Visualization and Inference System for Protein-Protein Interaction)

  • 이미경;김기봉
    • 한국정보과학회논문지:소프트웨어및응용
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    • 제31권12호
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    • pp.1602-1610
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    • 2004
  • 다양한 유전체 프로젝트로 말미암아 엄청난 서열 데이타들이 쏟아지고, 이에 따라 핵산 및 단백질 수준의 서열 데이타 분석이 매우 중요하게 인식되고 있다. 특히 최근에는 단백질이 단순하게 개별적인 기능을 가진 독립적인 요소가 아닌 전체 단백질 상호작용 네트워크 상에서 다른 객체들과 유기적인 관계를 갖으며 나름대로의 중요한 역할을 수행하고 있다는 점에 초점을 맞추어 연구가 진행되고 있다. 특히 단백질 상호작용 관계 분석을 위해서는 실제로 상호작용이 일어나는 도메인 모듈 정보가 아주 중요하게 작용하는데, 본 논문에서는 이러한 점을 고려하여 우리가 개발한 단백질 기능 및 상호작용 분석을 위한 PIVS(Protein-protein interaction Inference and Visualization System)에 대해 소개하고 있다 PIVS는 기존의 단백질 상호작용 데이타베이스들을 합쳐서 통합 데이타베이스를 생성하고, 다양한 전처리 과정으로 통합 데이타베이스 서열의 기능 및 주석 정보를 추출하여 로컬 데이타베이스화 하였다. 그리고 특히 단백질 상호작용 관계 분석을 위해 중요하게 작용하는 도메인 모듈 정보들을 추출하여 로컬 데이터베이스를 구축하였고, 기존의 단백질 상호작용 관계 데이타를 이용하석 도메인 사이의 상호작용 관계 정보도 수집하여 분석하였다. PIVS는 단백질의 종합적인 분석 정보, 즉, 기능 및 주석, 도메인, 상호작용 관계 정보 등을 손쉽고 편리하게 얻고자 하는 사용자에게 매우 유용하게 사용될 수 있을 것이다.

The predictive value of serum myeloma protein in solitary plasmacytoma

  • Chang, Won Ick;Koh, Hyeon Kang;Yoon, Sung-Soo;Kim, Han-Soo;Eom, Keun-Yong;Kim, Il Han
    • Radiation Oncology Journal
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    • 제38권2호
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    • pp.129-137
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    • 2020
  • Purpose: To identify the clinical usefulness of serum M protein and to establish a rationale for regular follow-up with serum protein electrophoresis in solitary plasmacytoma. Materials and Methods: Sixty-nine patients with solitary plasmacytoma and solitary plasmacytoma with minimal marrow involvement according to the International Myeloma Working Group criteria were retrospectively reviewed. Results: At a median follow-up of 6.2 years, 5-year local control (LC), 5-year multiple myeloma-free survival (MMFS), 5-year failure-free survival (FFS), and 5-year overall survival (OS) were 82.6%, 44.1%, 41.8%, and 85.1%, respectively. Among the patients whose initial serum M protein was present or not evaluated, 37.3% of patients showed disappearance of serum M protein after various treatment. MMFS of these patients were comparable to non-secretory plasmacytoma with undetectable levels of M protein, and significantly better than patients with persistent M protein. Increase of serum M protein ≥0.1 g/dL was most predictive of treatment failure with area under the curve of 0.731. Conclusion: Patients who eventually showed persistence of serum M protein after treatment showed worse MMFS and FFS compared to those whose serum M protein disappeared or who had initially non-secretory disease. The increase of serum M protein level ≥0.1 g/dL from current nadir was predictive of treatment failure. Therefore, regular follow-up with serum M protein is highly recommended especially unless the patient had initially non-secretory disease.

Electrophoretic Mobility to Monitor Protein-Surfacant Interactions

  • Hong, Soon-Taek
    • Preventive Nutrition and Food Science
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    • 제3권2호
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    • pp.143-151
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    • 1998
  • Protein -surfactant interactions have been investigate by measuring ζ-potential of $\beta$-lactoglobulin-coated emulsion droplets and $\beta$-lactoglobulin in solution in the rpesenceof surfactant, with particular emphasis on the effect of protein heat treatment(7$0^{\circ}C$, 30min). When ionic surfactant (SDS or DATEM) is added to the protein solution, the ζ-potential of the mixture is found to increase with increasing surfactant concentration, indicating surfactant binding to the protein molecules. For heat-denatured protein,it has been observed that the ζ-potential tends to be lower than that of the native protein. The effect of surfactant on emulsions is rather complicated .With SDS, small amounts of surfactant addition induce a sharp increase in zeta potential arising from the specific interaction of surfactant with protein. With further surfacant addition, there is a gradual reductio in the ζ-potential, presumably caused by the displacement of adsorped protein (and protein-surfactant complex) from the emulsion droplet surfac by the excess of SDS molecules. At even higher surfactant concentrations, the measured zeta potential appears to increase slightly, possibly due to the formation of a surfactant measured zeta potential appears to increase slightly, possibly due to the formation of surfactant micellar structure at the oil droplet surface. This behaviour contrastswith the results of the corresponding systems containing the anionic emulsifier DATEM, in which the ζ-potential of the system is found to increase continuously with R, particularly at very low surfactant concentration. Overall, such behaviour is consisten with a combination of complexation and competitive displacement between surfactant and protein occurring at the oil-water interface. In addition, it has also been found that above the CMC, there is a time-dependent increase in the negative ζ-potential of emulsion droplets in solutions of SDS, possibly due to the solublization of oil droplets into surfactant micelles in the aqueous bulk phase.

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한국 성인의 단백질 섭취량 추이 및 적절성 평가: 2010 ~ 2019년 국민건강영양조사 자료를 활용하여 (Trends in Dietary Protein Intake and Its Adequacy among Korean Adults: Data from the 2010 ~ 2019 Korea National Health and Nutrition Examination Survey (KNHANES))

  • 함현지;하경호
    • 대한지역사회영양학회지
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    • 제27권1호
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    • pp.47-60
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    • 2022
  • Objectives: This study aimed to evaluate dietary protein intake and its adequacy among Korean adults during recent 10 years. Methods: Based on the 2010 ~ 2019 Korea National Health and Nutrition Examination Survey (KNHANES) data, a total of 51,296 adults aged 19 years old or more who participated in a one-day 24-hr dietary recall were included. Dietary protein intake was estimated as percentages of total energy (% of energy) and grams per body weight (g/kg/day) and compared with the 2020 Dietary Reference Intakes for Koreans to evaluate the adequacy of protein intake. In addition, proportions of people whose protein intakes were less than the estimated average requirement (EAR) and above the upper limit of the acceptable macronutrient distribution range (AMDR) (> 20% of energy) were calculated according to sociodemographic characteristics. Results: Protein intake was increased from 14.7% of energy in 2010 to 15.6% of energy in 2019 among Korean adults. However, there was no increase in protein intake relative to the recommended nutrient intake (% RNI) during the recent 10 years. Protein intake relative to the RNI was decreased from 130.2% in 2010 to 121.1% in 2019 (P for trend < 0.0001) among total participants, and a significant decreasing trend was observed in all age groups except for over 65 years old. However, protein intake relative to the RNI was lowest in the elderly (98.6%). Proportions of low protein intake (< EAR) and high protein intake (> AMDR) increased in the past 10 years (P for trend < 0.0001 for all), and these were associated with socioeconomic statuses, such as education and household income levels. Conclusions: These findings suggest that protein adequacy in Korean adults has not been improved over the past decade compared with recommended levels. Nutritional education and intervention programs should consider different intake levels according to sociodemographic characteristics.

Effects of whey protein supplementation prior to, and following, resistance exercise on body composition and training responses: A randomized double-blind placebo-controlled study

  • Park, Yeram;Park, Hun-Young;Kim, Jisu;Hwang, Hyejung;Jung, Yanghoon;Kreider, Richard;Lim, Kiwon
    • 운동영양학회지
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    • 제23권2호
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    • pp.34-44
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    • 2019
  • [Purpose] The composition of protein supplements, the consumption timing immediately before and after resistance exercise training (RET), and the quantity of protein supplementation may be important factors for the im-provement of muscle mass and function. Although these factors should be considered comprehensively for effective improvement of muscular function in protein supplementation, relatively few studies have focused on this area. Therefore, this study was designed to investigate whether a protein blend supplement before and after resistance exercise for 12 weeks would be effective in increasing muscular function. [Methods] In total, 18 participants were randomly assigned to a placebo (PLA) or protein blend supplement (PRO) group. All subjects followed the same training routine 3 times per week for 12 weeks, taking placebo or protein supplements immediately before and after each exercise session. The protein supplement consisted of 40 g of blend protein, including hydrolyzed whey protein. The RET consisted of lower body (barbell squat, dead lift, seated leg extension, and lying leg curl) and upper body (bench press, barbell rowing, preacher bench biceps curl, and dumbbell shoulder press) exercises. A repetition was defined as three sets of 10-12 times with 80% of one repetition maximum (1RM). [Results] Although the PRO group had a lower protein intake in terms of total food intake than the PLA group, the mean changes in muscle circumference, strength, and exercise volume increased, especially at week 12, compared to the PLA group. [Conclusion] These results suggest that the composition and timing of protein intake are more important than the total amount.

제주지역 일부 20-30대 성인의 단백질 건강기능식품/강화식품 섭취실태 (Consumption of protein supplements/protein-fortified foods among young adults in Jeju)

  • 이효주;장유정;김수민;하경호
    • Journal of Nutrition and Health
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    • 제57권2호
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    • pp.261-274
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    • 2024
  • Purpose: Recently, high-protein diets have become highly popular, and the market for protein products has steadily increased in Korea together with the development of various types of such products. However, there is limited information on the consumption of protein supplements (PS) or protein-fortified foods (PF). Thus, this study aimed to evaluate the use of PS/PF among young adults in Jeju. Methods: A total of 350 adults (140 men and 210 women) aged 19-39 years voluntarily participated in this study from June 2022 to May 2023. PS/PF use was measured using a questionnaire. Dietary intake was assessed using a 24-hour dietary recall. Results: Approximately 31.4% of the participants (n = 110) had consumed PS/PF for more than 2 weeks during the past year and 71.8% of them (n = 79) were still consuming these products (PS/PF consumers). The PS/PF consumers tended to be male and physically active (p < 0.05 for all). The most frequent reason for PS/PF use was muscle gain (59.5%), followed by protein supplementation (19.0%) and body fat loss (13.9%), and the most frequent type of PS/PF consumed was powders (70.6%), followed by drinks (17.7%) and bars (8.8%). The PS/PF consumers tended to consume a high-protein low-carbohydrate diet compared to the non-consumers. The prevalence of consuming dietary protein less than the estimated average requirement (EAR) was significantly lower in PS/PF consumers (13.9%) compared to non-consumers (25.4%; p = 0.0316). Conclusion: These findings indicate that the necessity of protein supplementation should be determined based on the current dietary protein intake and individual requirements. The study also provides the basic information for establishing guidelines for appropriate protein intake.

Effects of Ultra-high Pressure Homogenization on the Emulsifying Properties of Whey Protein Isolates under Various pH

  • Lee, Sang-Ho;Subirade, Muriel;Paquin, Paul
    • Food Science and Biotechnology
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    • 제17권2호
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    • pp.324-329
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    • 2008
  • The effect of ultra-high pressure homogenization on the emulsifying properties of whey protein was investigated in a model emulsion made with whey protein isolate and soya oil under various pH. The emulsifying properties, the average diameter of the oil droplets ($d_{vs}$), and the protein load, were measured for each emulsion produced at different homogenization pressures (50 to 200 MPa) and pH values (4.6 to 8.0). According to the results of variance analysis and response surface, the pH had more influence on oil droplet size and protein load than homogenization pressure. The model equations, which were obtained by response surface analysis, show that pH and homogenization pressure had the major effect on oil droplet size and protein load. Higher homogenization pressure decreased the average droplet size and the protein load. Homogenization at high pressure, as opposed to low pressure, causes no overprocessing, but the effect was pH-dependent. The average diameter of the oil droplets increased slightly by decreasing the pH from 8.0 to 6.5 and then increased dramatically toward the isoelectric point of whey protein (i.e., at pH 4.6). Moreover associated droplets were found at acidic pH and their size was increased at high temperature.

메기, Parasilurus asotus 사료의 최적 단백질 함량 (Optimum Protein Levels in Diet for Fingerling Korean Catfish, Parasilurus asotus)

  • 강석중;정우건
    • 한국양식학회지
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    • 제6권1호
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    • pp.47-53
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    • 1993
  • 새로운 양식 대상종으로 메기의 생산량 증가를 위하여 사료 중 최적 단백질 함량을 설정 하고자 실험한 결과는 다음과 같다. 평균 체중 약 7g되는 메기 치어의 체중은 사료중 단백질 함량 $25\%\~55\%$ 사이에서 단백질 함량이 높은 사료를 공급할수록 증가하였으나, 근육 단백질의 증가는 $45\%$ 부근에서 최고치에 달하였으며, 그 이상으로 사료 단백질 함량을 증가시켜도 변화가 없었다. 단백질 효율 및 정미단백 이용율은 $25\%$ 부근에서 최고치에 달했지만 $45\%$ 부근에서 일시적으로 증가하여 단백질 함량 $45\%$ 실험구가 가장 양호한 것으로 나타났다. 따라서 멸치분을 단백질 원으로 하였을 때 메기 치어 사료의 최적 단백질 함량은 $45\%$로 사료된다.

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