• 보존과학회지
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• 제37권4호
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• pp.357-361
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• 2021

In order to determine the changes in microbial community due to termites, soil microorganisms surrounding the termites were investigated. First, bacterial communities from soil with termites collected at Seonamsa temple, Suncheon city, Korea were compared by next-generation sequencing (NGS, Illumina Miseq). The bacterial composition of soil from Daeungjeon without termites and the soil from Josadang, Palsangjeon, and Samjeon with termites were compared. Next, the bacterial composition of these soils was also compared with that of humus soil cultured with termites. A total high-quality sequences of 71,942 and 72,429 reads were identified in Seonamsa temple's soil and humus soil, respectively. The dominant phyla in the collected Seonamsa temple's soil were Proteobacteria (27%), Firmicutes (24%) and Actinobacteria (21%), whereas those in the humus soil were Bacteriodetes (56%) and Proteobacteria (37%). Using a two-dimensional plot to explain the principal coordinate analysis of operational taxonomic unit compositions of the soil samples, it was confirmed that the samples were divided into soil with and without termites, and it was especially confirmed that the Proteobacteria phylum was increased in humus soil with termites than in humus soil without termites.

• Animal Bioscience
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• 제35권8호
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• pp.1121-1128
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• 2022

Objective: This study aimed to identify the genetic diversity and population structure of Mongolian horse populations according to the province of residence (Khentii, KTP; Uvs, USP; Omnogovi and Dundgovi, GOP; Khovsgol, KGP) using 14 microsatellite (MS) markers. Methods: A total of 269 whole blood samples were obtained from the four populations (KTP, USP, GOP, KGP) geographically distinct provinces. Multiplex polymerase chain reaction (PCR) was conducted using 14 MS markers (AHT4, ASB2, ASB17, ASB23, CA425, HMS1, HMS2, HMS3, HMS6, HMS7, HTG4, HTG6, HTG7, and VHL20), as recommended by the International Society for Animal Genetics. Capillary electrophoresis was conducted using the amplified PCR products, alleles were determined. Alleles were used for statistical analysis of genetic variability, Nei's DA genetic distance, principal coordinate analysis (PCoA), factorial corresponding analysis (FCA), and population structure. Results: On average, the number of alleles, expected heterozygosity (H_Exp), observed heterozygosity (H_Obs), and polymorphic information content among all populations were 11.43, 0.772, 0.757, and 0.737, respectively. In the PCoA and FCA, GOP, and KGP were genetically distinct from other populations, and the KTP and USP showed a close relationship. The two clusters identified using Nei's DA genetic distance analysis and population structure highlighted the presence of structurally clear genetic separation. Conclusion: Overall, the results of this study suggest that genetic diversity between KTP and USP was low, and that between GOP and KGP was high. It is thought that these results will help in the effective preservation and improvement of Mongolian horses through genetic diversity analysis and phylogenetic relationships.

• 한국환경농학회지
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• 제28권4호
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• pp.365-370
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• 2009

The aim of this study was to investigate the vegetation types of Minarimot, in Jeju Islands. The vegetation types were classified by the Z-M school method and cluster analysis. The vegetation in Minarimot was classified into 6 communities and 2 subcommunities: Persicaria thunbergii-Isachne globosa community (vegetation type: A), Scirpus tribangulatus-Eleocharis manillata var. cyclocarpa community (B) (Aneilema keisak subcommunity (B-1) and Caldesia parnassifolia-Potamogeton distinctus subcommunity (B-2)), Eleocharis kuroguwai community (C), Phragmites communis community (D), Scirpus tabernaemontani community(E) and Typha orientalis community (F). These communities were grouped into three main categories according to cluster analysis. The community (A) established at the edge of the wetland which has the driest condition was distinguished as Group I, while the community (B) emerged in the submerged zone was distinguished as Group III. The Group II was designated as the communities (C, D, E, F) between Group I and III, whose communities were occasionally submerged. The result of principal coordinate analysis (PCoA) appeared that the different vegetation established along the wetland were depending on water environment such as water depth and the period submerged.

• 한국약용작물학회지
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• 제28권3호
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• pp.183-194
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• 2020

Background: This study investigated the effect of soil properties and soil bacterial community on early growth characteristics of wild-simulated ginseng (Panax ginseng C. A. Meyer) in coniferous and mixed forest experimental fields. Methods and Results: The soil bacterial community was analyzed using a high throughput sequencing technique (Illumina MiSeq sequencing). The relationship between the soil bacterial community, soil properties, and growth characteristics of wild-simulated ginseng were analyzed using principal coordinate analysis (PCoA) and the Pearson's correlation analysis. Soil properties and soil bacterial community showed significant difference with forest physiognomy. Results of Pearson's correlation analysis and PCoA showed that the soil properties (soil pH, organic matter, total nitrogen, and cation exchange capacity) and soil bacterial community had significant correlation with tree species ratio and early growth characteristics of wild-simulated ginseng. Conclusions: This study clearly demonstrated the effect of soil properties and soil bacterial community on early growth characteristics of wild-simulated ginseng in coniferous and mixed forest. Moreover, these results will help in the selection of suitable cultivation sites for wild-simulated ginseng.

• 한국자원식물학회지
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• 제29권3호
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• pp.322-330
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• 2016

Understanding the genetic variation among landrace collections is important for crop improvement and utilization of valuable genetic resources. The present study was carried out to analyse the genetic diversity and associated population structure of 621 foxtail millet accessions of Korean landraces using 22 EST-SSR markers. A total of 121 alleles were detected from all accessions with an average of 5.5 alleles per microsatellite locus. The average values of gene diversity, polymorphism information content, and expected heterozygosity were 0.518, 0.594, and 0.034, respectively. Following the unweighted neighbor-joining method with arithmetic mean based clustering using binary data of polymorphic markers, the genotypes were grouped into 3 clusters, and population structure analysis also separated into 3 populations. Principal coordinate analysis (PCoA) explained a variation of 13.88% and 10.99% by first and second coordinates, respectively. However, in PCoA analysis, clear population-level clusters could not be found. This pattern of distribution might be the result of gene flow via germplasm exchanges in nearby regions. The results indicate that these Korean landraces of foxtail millet exhibit a moderate level of diversity. This study demonstrated that molecular marker strategies could contribute to a better understanding of the genetic structure in foxtail millet germplasm, and provides potentially useful information for developing conservation and breeding strategies.

• 한국자원식물학회:학술대회논문집
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• 한국자원식물학회 2020년도 춘계학술대회
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• pp.47-47
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• 2020

The Korean National Agrobiodiversity Center holds the more than 1300 accessions of proso millet, but a large portion of accessions are landrace of Korea that has very similar traits. To comprehend the maximum genetic diversity of this crop, a core collection with minimum number of accessions will facilitate easy access to genetic material. Here we assessed the genetic diversity and population structure in a germplasm collection of 830 accessions by employing EST-SSR markers and morphological traits. A total of 107 alleles were detected with an average allele number of 4.9 per locus among the 830 accessions based on 37 EST-SSR markers. The number of alleles per locus ranged from 2 to 7. Polymorphism information content and expected heterozygosity ranged from 0.06 to 0.68 (mean = 0.21) and 0.06 to 0.73 (mean = 0.23), respectively. The germplasm collection was separated into two groups based on population structure analysis, whereas principal coordinate analysis (PCoA) could not cluster accessions according to their geographic origin. Subsequently, a preliminarily developed core collection with a total of 141 accessions (17%) was selected from the whole set of germplasm by combining allelic variations of EST-SSR markers and eight different phenotypic traits. The core collection optimally represented the whole germplasm collection and displayed a similar level of PCoA value and genetic variation from the initial collection. The results obtained here provide a primary resource for further genetic analysis and establish a reference for further development of appropriate genetic breeding strategies.

• 정보처리학회논문지:소프트웨어 및 데이터공학
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• 제11권1호
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• pp.41-50
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• 2022

본 논문에서는 멜라닌과 헤모글로빈 등의 피부 색상을 구성하는 주요한 요소들을 카메라의 RGB 신호로부터 직접 계산하는 방법을 제안한다. 피부 색상의 주요한 요소들은 통상적으로 특정한 장비를 이용하여 분광 반사도를 측정하고, 측정된 빛의 일부 파장에서의 값들을 중심으로 재구성하는 방법을 사용한다. 이와 같은 방법으로 산출된 값들은 멜라닌 지수, 홍반 지수와 같은 것들이 있으며, 분광반사도 측정 장치나 다중스펙트럼 카메라 등의 특수한 장비를 필요로 한다. 일반적인 디지털 카메라로부터 이와 같은 성분요소들에 대한 직접적인 계산방법은 찾아보기 어려우며, 독립성분 분석(Independent Component Analysis)을 이용하여 멜라닌과 헤모글로빈의 농도를 간접적으로 계산하는 방법은 제안되어 있다. 이 방법은 일정한 RGB 영상의 영역을 대상으로 하여, 주성분 분석(Principal Component Analysis)과 유사한 방식으로 멜라닌과 헤모글로빈의 특성벡터를 추출하고, 농도를 계산할 수 있다. 이 방법의 단점은 일정한 영역의 화소 그룹을 입력으로 이용하기 때문에 화소단위의 직접적인 계산이 어렵고, 추출된 특성벡터는 최적화 방식으로 구현하기 때문에 실행할 때마다 다른 값으로 계산되는 경향이 있다. 최종적인 계산은 특성벡터 자체를 활용하지 않고, RGB 좌표계로 다시 변환하여 멜라닌과 헤모글로빈의 성분을 나타내는 영상 형태로 결정된다. 이 방법의 단점을 개선하기 위하여 제안하는 방법은 특성벡터를 활용하여 RGB 좌표계가 아닌 특징 공간에서 멜라닌과 헤모글로빈의 성분 값을 계산하는 것과, 일반적인 디지털 카메라를 이용하여 피부색에 해당하는 분광 반사도를 계산하는 방법, 분광 반사도를 이용하여 멜라닌과 옥시헤모글로빈, 디옥시헤모글로빈, 카로티노이드 등의 피부색소를 구성하는 세부 성분들의 계산방법 등이다. 제안한 방법은 분광 반사도 측정 장치나 다중 스펙트럼 카메라 등의 특수한 장비를 필요로 하지 않으며, 기존 방법과는 달리 화소단위의 직접적인 계산이 가능하고, 반복 실행에도 동일한 특성을 얻을 수 있다. 제안한 방법은 기존에 비하여 성능의 안정성을 나타내는 표준편차가 15% 수준으로 낮게 나타나 6배 정도의 안정적인 성능을 가진 것으로 추정된다.

• 환경생물
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• 제33권1호
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• pp.63-74
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• 2015

본 연구는 습지보호지역인 장도습지에 대한 식생의 다양성과 공간적 분포 특성 파악을 통해 습지의 보전 및 복원 방안 마련의 기초자료 제공을 위해 이루어졌다. 종조성을 기반으로 하는 Z.-M. 학파의 식물사회학적 연구 방법에 의한 식생 조사 및 버드나무의 매목 조사, 좌표결정법에 의한 식물군락과 환경요소들 간의 관계 규명이 이루어졌다. 총 88종으로 이루어진 7개의 식물군락이 분류되었으며 습생식생과 건생식생으로 대분류되었다. 식물군락의 공간적 분포는 일차적으로 토양 수분조건에 의해 결정되고, 이차적으로 유기물 양에 의해 결정되는 것으로 드러났다. 습지식생 면적은 $7,337m^2$로서 습지보호지역의 약 8%이며, 습지보호지역 이외의 공간에도 분포하고 있어 보호지역 경계 재조정 필요성이 제기되었다. 버드나무의 분포 확산은 1990년대 이후 휴경과 가축 방목이 통제 되면서 습지 가장자리부터 중앙부로 확장된 것으로 드러났다. 이상의 연구 결과들을 토대로 보호지역 보전 및 복원 방안이 제시되었다.

• Journal of Microbiology and Biotechnology
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• 제20권4호
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• pp.683-692
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• 2010

Morphologically, nine different slow-growing protoclones were screened from regenerated protoplasts of heterokaryotic Agaricus bisporus. As such, the present study is the first report on differentiating homo- and heterokaryotic protoclones using random amplified polymorphic DNA (RAPD) and inter-simple sequence repeat (ISSR) markers. Among 80 primers tested, the seven ISSR and seven RAPD primers selected for the analysis generated a total of 94 ISSR and 52 RAPD fragments, respectively. The ISSR fingerprinting also detected more polymorphic loci (38.29%) than the RAPD fingerprinting (34.61%). A principal coordinate analysis (PCA) was employed to evaluate the resolving power of the markers as regards differentiating protoclones. As a result, the mean polymorphism information content (PIC) for each marker system (i.e., 0.787 for RAPD and 0.916 for ISSR) suggested that ISSR is more effective for determining polymorphisms. The dendrograms constructed using RAPD, ISSR, and an integrated RAPD and ISSR marker system were highly correlated with one another as revealed by a high Mantel correlation (r= 0.98). The pairwise similarity index values also ranged from 0.64 to 0.95 (RAPD), 0.67 to 0.98 (ISSR), and 0.67 to 0.98 (RAPD and ISSR), whereas the mean similarity index values of 0.82, 0.81, and 0.84 were obtained for the RAPD, ISSR, and combined data, respectively. As there was a good correspondence between the RAPD and ISSR similarity matrices, ISSR would appear to be an effective alternative to RAPD in the genetic diversity assessment and accurate differentiation of homo- and heterokaryotic protoclones of A. bisporus.

• 한국약용작물학회지
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• 제28권3호
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• pp.209-220
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• 2020

Background: This study investigated the effects of soil properties on the soil fungal community in first and continuous cultivation areas of Cnidium officinale Makino. Methods and Results: The soil fungal community was analyzed for relative abundance and principal coordinate analysis (PCoA) was conducted using Illumina MiSeq sequencing. The correlation between the soil chemical properties and the soil fungal community was assessed with distance-based linear models (DISTLM). The soil fungal community showed distinct clusters consisting in the continuous cultivation area of C. officinale Makino. PCoA and DISTLM indicated that soil pH, calcium, and available P₂O₅ significantly affected the soil fungal community in the cultivation area of C. officinale Makino. In addition, considering 5 different pathogenic fungi the relative abundance of Fusarium in the continuous cultivation area was significantly higher compared to that in the first cultivation area of C. officinale Makino. Conclusions: This study is important because it has determinined the effects of soil properties on the soil fungal community in both first and continuous cultivation areas of C. officinale Makino. Moreover, these results will be helpful to investigate the cause of continuous cropping obstacle in C. officinale Makino by examining the changes of soil fungal community.