• Title/Summary/Keyword: pilsed-field gel electrophoresis

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Restriction Fragment Fingerprint of an Alkaliphilic Micrococcus sp. Y-1 Genome by Pulsed-field Gel Electrophoresis

  • Kim, Cheorl-Ho
    • Journal of Microbiology and Biotechnology
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    • v.5 no.1
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    • pp.1-5
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    • 1995
  • A genomic DNA of alkaliphilic bacterium, Micrococcus sp. Y-l, was analysed using the physical mapping method of pulsed-field gel electrophoresis (PFGE). Five restriction enzymes of Sspl, Hpal, Xbal, Ndel or EcoRI, which recognize the Adenine-Thymine-rich sequences of genomic DNA, were used for the generation of few (7 to 20) distinctly separate fragments, with average sizes in the range of 200~500 kb. However, the sites for Notl and SfiI, 8 base-recognizing enzymes, were highly frequent. The genome size of this strain was determined to be 4 mega base pairs (Mb) from restriction fragments separated by PFGE. This is the first case of restriction mapping in alkaliphilic bacterium.

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