• Title/Summary/Keyword: photochemistry

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Photochemistry of pharaonis phoborhodopsin and its interaction with the transducer

  • Kamo, Naoki;Shimono, Kazumi;Iwamoto, Masayuki;Sudo, Yuki;Yoshida, Hideaki
    • Journal of Photoscience
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    • v.9 no.2
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    • pp.102-105
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    • 2002
  • Phoborhodopsin (pR or sensory rhodopsin II, sRII; the absorption maximum of ∼ 500 nm) is a retinoid protein and works as a photoreceptor of the negative phototaxis of Halobacterium salinarum. pharaonis phoborhodopsin (ppR or pharaonis sensory rhodopsin II, psRII) is a corresponding protein of Natronobacterium pharaonis. These sensory proteins form a complex with a cognate transducer protein in the membrane, and this complex transmits the light-signal to the cytoplasm to evoke avoidance reaction from blue-green light. Recently, the functional expression in Escherichia coli membrane of ppR was achieved, which can afford a large amount of the protein and enables mutant studies to clarify the role of various amino acid residues. A truncated transducer which can bind to ppR is also expressed in Escherichia. coli membrane. In this article, we will review properties of ppR mainly using observations of our laboratory; which contains photochemistry (photocycle), light-driven proton uptake, release and transport, F -helix titling during photocycle and association of the transducer.

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Photochemical Kinetics of Maleic to Fumaric Acid on Silver Nanoparticle Surfaces

  • Jang, Nak-Han;Jeong, Dae-Hong;Suh, Jung-Sang
    • Bulletin of the Korean Chemical Society
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    • v.26 no.5
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    • pp.791-794
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    • 2005
  • A visible photochemistry of maleic to fumaric acid adsorbed on silver nanoparticle surfaces was investigated as probed by SERS using a simple flow method. Photoisomerization of maleic to fumaric acid was consecutively observed in the condition of various flow rates, which varied the exposure time of laser beam. The sequential SERS spectra of maleic acid indicated that the photochemical isomerization and desorption took place simultaneously on silver nanoparticle surfaces as a function of laser fluency and wavelength. For 530.9nm laser line excitation, the rate constant coefficients were obtained with a = 5.9 $sec^{-1}$ mW for isomerization and b = 13.9 $sec^{-1}$ mW for desorption, which $k_1\;=\;aI^n\;and\;k_2\;=\;bI^m$. Both reactions were one photon process (n = 1, m = 1) of a visible light and relatively fast process whose decay time was in the range of milli-second for 50 mW laser power. The rate of photochemical reaction increased on going toward the blue and photodesorption was a dominant process. A simple flow method used in this study was very useful to study a relatively fast photochemical reaction of molecules adsorbed on silver nanoparticle surfaces.

A New Analytical Method to Determine the Purity of Synthetic Fluorophores using Single Molecule Detection Technique

  • Song, Nam-Yoong;Kim, Hyong-Ha;Park, Tae-Sook;Yoon, Min-Joong
    • Journal of Photoscience
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    • v.12 no.2
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    • pp.87-93
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    • 2005
  • A new assay technique to distinguish between pure compounds and the isomeric mixtures has been suggested using single molecule (SM) fluorescence detection technique. Since the number of emission spots in a fluorophorespread film prepared from a genuine dye solution was determined by experimental condition, the deviation of spot numbers from the expected values could be considered to be an indication of lower purity of the sample solution. The lower limit of sample concentration for this assay was determined to be $5{\times}10^{-10}$ M to show uniform number of expected spots within 10% uncertainties in our experimental condition. An individual fluorescence intensity distribution for a mixture of isomers having doubly different emissivities was simulated by adding distributions obtained from Cy3 and nile red (NR) independently. The result indicated that the mixture could be identified from the pure compounds through the difference in the number of Gaussian functions to fit the distribution. This new assay technique can be applied to the purity test for synthetic biofluorophores which are usually prepared in small quantities not enough for classical ensemble assays.

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Atmospheric Photochemistry in Low-and High-NOx Regimes

  • Kim, Do-Yong;Soda, Satoshi;Kendo, Akira;Oh, Jai-Ho
    • Journal of Environmental Science International
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    • v.16 no.1
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    • pp.1-8
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    • 2007
  • Atmospheric photochemistry of $O_3-NOx-RH$ were considered theoretically, to clarify the reasons for the different trends of between the formation of photochemical oxidants (Ox) and its primary pollutants for the Low-and High-NOx regimes. Equations of OH, $HO_2$, and production of ozone ($O_3$) as a function of nitrogen oxides (NOx) and reactive hydrocarbons (RH) were represented in this study. For the Low-NOx regime, $HO_2$ radical is proportional to RH but independent of NOx. OH radical is proportional to NOx but inversely-proportional to RH. $O_3$ production is proportional to NOx but has a weak dependence on RH. For the High-NOx regime, OH and $HO_2$ radicals concentrations and $O_3$ production are proportional to RH but inversely-proportional to NOx. In addition, the Osaka Bay and surrounding areas of Japan were evaluated with the mass balance of odd-hydrogen radicals (Odd-H) using CBM-IV photochemical mechanism, in order to distinguish the Low- and High-NOx regimes. The Harima area (emission ratio, RH/NOx = 6.1) was classified to the Low-NOx regime. The Hanshin area (RH/NOx = 3.5) and Osaka area (RH/NOx = 4.3) were classified to the High-NOx regime.

Microflow Photochemistry - Acetone sensitized Addition of Isopropanol to (5R)-5-Menthyloxy-2-(5H)-furanone

  • Aida, Shin;Nishiyama, Yasuhiro;Kakiuchi, Kiyomi;Hoffmann, Norbert;Fon, Adeline;Oelgemoller, Michael
    • Rapid Communication in Photoscience
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    • v.2 no.3
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    • pp.68-71
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    • 2013
  • Acetone sensitized photoadditions of isopropanol to (5R)-5-menthyloxy-2-(5H)-furanone were investigated in two different microflow reactor systems. Setup A employed a commercially available glass reactor under a UVB-panel. Setup B utilized a FEP microcapillary wrapped tightly around a Pyrex cylinder with a single UVB fluorescent tube at its center. The reactions under flow conditions were subsequently compared to analogue reactions conducted in a batch chamber reactor. Overall, the microflow systems gave faster conversions and higher isolated yields. The flexible microcapillary setup, however, showed the best performance and promise in terms of future scale-up and reactor optimization.

Case study of ozone photochemistry in the Seoul metropolitan area during the summer 2003 (2003년 여름동안 서울지역에서의 오존의 광화학적 특성에 대한 사례 연구)

  • Shon Zang-Ho
    • Journal of Environmental Science International
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    • v.14 no.8
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    • pp.749-760
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    • 2005
  • This study examines the local ozone photochemistry in the urban air. The photochemical formation and destruction of ozone was modeled using a photochemical box model. For the model prediction of ozone budget, measurements were carried out from an urban monitoring station in Seoul ($37.6^{\circ}N,\;127^{\circ}E$), Korea for intensive sampling time period (Jun. $1\~15$, 2003). Photochemical process is likely to play significant role in higher ozone concentrations during the sampling period. The results of model simulation indicated that photochemical ozone production pathway was the reaction of NO with $HO_2$ while ozone destruction was mainly controlled by a photochemical destruction pathway, a reaction of $H_2O$ with $O(^1D).$ The contribution of NMHCs to formation and destruction of ozone in the urban was significant. This was entirely different from remote marine environment. The rates of net photochemical ozone production ranged from 0.1 to 1.3 ppbv $h^{-1}$ during the study period.