• 제목/요약/키워드: phnS

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Pseudomonas sp. DJ77에서 Glutathione S-transferase를 암호하는 phnC 유전자의 염기서열과 상동성 분석 (Nucleotide Sequence and Homology Analysis of phnC Gene Encoding Glutathione S-transferase from Pseudomonas sp.DJ77)

  • 우희종;신명수;김성재;정용제;정안식;박광균;김영창
    • 미생물학회지
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    • 제33권2호
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    • pp.86-91
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    • 1997
  • Pseudomonas sp. DJ77로부터 클로닝된 glutathione S-transferase 유전자(phnC)의 염기서열을 결정하였다. 603bp의 open reading frame(ORF)이 존재하였고 개시코돈 앞에서 Shine-Dalgarno sequence를, 종결코돈 뒤에서는 terminator sequence를 발견하였다. phnC 유전자에서 만들어지는 phnC 단백질은 21,416 Da으로 SDS-polyacrylamide gel 전기영동 결과와 일치하였다. PhnC는 Bulkholderia cepacia LB400, Cycloclasticus oligotrophus RB1의 GST와 각각 53.7%, 49%의 높은 상동성을 나타냈다. 아미노산 서열의 상동성과 필수잔기들의 존재유무로 판단할 때 PhnC GST는 theta class GSTs와 진화적으로 유연관계가 높았지만 alpha, mu, pi, sigma class GSTs에서 구조적, 기능적으로 중요하다고 알려진 아미노산 잔기들이 PhnC GST에도 보존되어 있었다. 또한, phnC 유전자의 위치가 C. oligotrophus RB1, B. cepacia LB400 등의 GST 유전자 위치와 유사하다는 점에서 PhnC 효소는 난분해성 방향족 탄화수소의 분해에 관여하는 것으로 생각된다.

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Sphingomonas chungbukensis DJ77 균주에서 2- hydroxychromene-2-carboxylate isomerase를 암호화하는 phnS 유전자의 염기서열과 상동성 분석 (Sequence and phylogenetic analysis of the phnS gene encoding 2-hydroxychromene-2-carboxylate isomerase in Sphingomonas chungbukensis DJ77)

  • 엄현주;강민희;김영필;김성재;김영창
    • 미생물학회지
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    • 제39권3호
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    • pp.123-127
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    • 2003
  • Sphingomonas chungbuken교 DJ77은 phenanthrene을 단일 탄소원과 에너지원으로 이용하여 살아갈 수 있다. pUPXS는 phenanthrene과 naphthalene분해를 위해 필요한 2-hydroxychromene-2-carboxylate (HCCA) isomerase를 암호화하는phnS유전자를 포함한다. 본 논문에서는 phnS유전자가 포함된 3271 bp의 염기 서열을 결정하였다. 이 유전자는 ATG를 개시코돈으로 사용하며, TAA를 종결 코돈으로 사용하고 있다. 또한 개시 코돈의 5 bp앞쪽으로 GGAA라는 ribosomal binding site를 갖는다. phnS는 총 594 bP의 open reading frame을 포함하며,158개의 아미노산으로 구성되었다. phns를 구성하는 아미노산서열은 S. aromaticivorans F199의 유사서열과 87%의 유사성을 나타냈다. phns 유전자는 biphenyl dioxygenase를 구성하는 2,3-dihydroxybiphenyl 1,2-dioxygenase를 암호화하는 phnQ와 ferredoxin를 암호화 하는 phnR과 같은 operon을 이루며, 이들 유전자의 downstream에 위치하고 있다.

Pseudomonas sp. strain DJ77로 부터 phenanthrene 분해 유전자군의 클로닝과 대장균에서의 발현 (Molecular Cloning of a Gene Cluster for Phenanthrene Degradation from Pseudomonas sp. Strain DJ77 and Its Expression in Escherichia coli)

  • 김영창;윤길상;신명수;김흥식;박미선;박희진
    • 미생물학회지
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    • 제30권1호
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    • pp.1-7
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    • 1992
  • Pseudomonas sp. DJ77 의 chromosomal DNA로 부터 6-8kb XhoI 절편 상에 존재하는 phenanthrene 분해에 관련된 유전자군을 vector pBLUESCRIPT SK(+)에 클로닝하였다. 이렇게 얻은 재조합 plasmid인 pHENX7을 가지고 있는 JM101 균주는 3-methylcatechol을 노란색의 meta-cleavage 화합물로 전환학 수 있었다. 그러자 삽입된 절편의 방향이 반대가 되도록 제조한 pHENX7R 은 extradiol dioxygenase 활성을 나타내지 않기 때문에 전사방향을 알 수 있었다. pHENX7과 이의 유도체들을 지니는 JM101 균주에서 PhnC(24kDa), PhnD(31 kDa), PhnE(34 kDA), PhnF(15 kDa) 의 4 polypeptide 를 확인학 수 있었고 개개의 유전자의 위치와 범위를 알 수 있었다. 유전자 순서는 phnC-phnD-phnE-phnF-phnG 이었으며, phnD, phnE, phnG 는 각기 gluthione S-transferase, meta-cleavage compound hydrolase, extradiol dioxygenase, metacleavage compound dehydrogenase 의 유전자이었다.

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대장균에서 분리된 din (damage-inducible)과 tin (temperature-inducible) 유전자들의 특성 (Characterization of the din (damage-inducible) and tin (temperature-inducible) Genes Isolated from Escherichia coli)

  • 백경희
    • 미생물학회지
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    • 제29권6호
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    • pp.392-396
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    • 1991
  • Pseudomonas sp. DJ77의 chromosomal DNA로부터 6.9kb XhoI 절편 상에 존재하는 phenanthrene 분해에 관련된 유전자군을 vector pBLUESCRIPT SK(+)에 클로닝하였다. 이렇게 얻은 재조합 plasmid인 pHENX7을 가지고 있는 JM101 균주는 3-methylcarechol을 노란색의 meta-cleavage 화합물로 전환할 수 있었다. 그러나 삽입된 절편의 방향이 반대가 되도록 제조한 pHENX7은 extradiol dioxygenase 활성을 나타내지 않기 때문에 전사방향을 알 수 있었다. pHENX7과 이의 듀도체들을 지니는 JH101균주에서 PhnC(24kDa), PhnD(31KDa), PhnE(34kDa), PhnF(KDa)의 4 polypeptide를 확인 할 수 있었고 개개의 유전자의 위치와 범위를 알 수 있었다. 유전자 순서는 phnC-phnD-phnE-phnF-phnG이었으며, phnC, phnD, phnE, phnF, phnG는 각기 glutathione S-transferase, meta-cleavage compound hydrolase extradiol dioxygenase, meta-cleavage compound dehydrogenase의 유전자이었다.

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Pseudomonas sp. Strain DJ77에서 phnF 유전자의 구조 (Structure and Function of the phnF Gene of Pseudomonas sp. Strain DJ77)

  • 이성훈;김성재;신명수;김치경;임재윤;이기성;민경희;김영창
    • 미생물학회지
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    • 제33권2호
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    • pp.92-96
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    • 1997
  • Pseudomonas sp. strain DJ77로부터 클로닝한 catechol 분해와 관련된 phnDEFG 유전자들이 존재하는 pHENX7에서 phnF 유전자의 염기서열을 밝혔다. Extradiol dioxygenase 유전자인 phnE와, 2-hydroxymuconic semialdehyde dehydrogenase를 생산하는 phnG 유전자 사이에 존재하는 유전자 phnF는 432 bps로 된 하나의 open reading frame(ORF)으로 존재하였고, 여기서 유추한 아미노산은 143개로 분자량 13,859 dalton의 polypeptide를 만들어 내고 있다. phnF 유전자는 Sphingomonas sp. strain HV3 catE 유전자 부위와 sphingomonas yanoikuyae B1의 xylE와 xylG 사이에 존재하는 ORF 부위의 염기서열과 각각 99%, 68.6%의 상동성을 가지고 있었다. 또한 PhnF 단백질의 아미노산서열은 citrobacter freundii DSM30040의 orfY 부위의 아미노산서열과 62.3%의 상동성이 있었다.

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Pseudomonas sp. strain DJ77에서 Plant-Type의 Ferredoxin을 암호화하는 phnM 유전자의 구조 (Genetic Structure of the phnM Gene Encoding Plant-Type Ferredoxin from Pseudomonas sp. strain DJ77)

  • 김성재;김영창
    • 미생물학회지
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    • 제34권3호
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    • pp.115-119
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    • 1998
  • Pseudomonas sp. DJ77로부터 전보에서 클로닝한 pHENX7의 하류방향으로 약 3kb 정도를 포함하는 pYCS500을 클로닝하였다. PYCS500의 제한효소지도를 작성하고 부분적으로 염기서열을 분석한 결과 465 bp의 HindIII-ClaI절편에서 282 bp로 이루어진 하나의 open reading frame(ORF)을 발견하였다. phnM으로 명명된 이 ORF는 93개의 아미노산으로 구성된 polypeptide를 암호화하고 있었으며 계산된 분자량은 10,008 Da이었다. PhnM은 NahT, XylT, DmpQ, AtdS, PhlG, PhhQ, TbuW 등 plant-type ferredoxin 형태의 단백질과 37.7%-53.9%의 상동성을 나타내었으며 이들이 공통적으로 가지고 있는 motif가 일치하였다.

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Pharmacological and non-pharmacological strategies for preventing postherpetic neuralgia: a systematic review and network meta-analysis

  • Kim, Junhyeok;Kim, Min Kyoung;Choi, Geun Joo;Shin, Hwa Yong;Kim, Beom Gyu;Kang, Hyun
    • The Korean Journal of Pain
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    • 제34권4호
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    • pp.509-533
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    • 2021
  • Background: Postherpetic neuralgia (PHN) is a refractory complication of herpes zoster (HZ). To prevent PHN, various strategies have been aggressively adopted. However, the efficacy of these strategies remains controversial. Therefore, we aimed to estimate the relative efficacy of various strategies used in clinical practice for preventing PHN using a network meta-analysis (NMA). Methods: We performed a systematic and comprehensive search to identify all randomized controlled trials. The primary outcome was the incidence of PHN at 3 months after acute HZ. We performed both frequentist and Bayesian NMA and used the surface under the cumulative ranking curve (SUCRA) values to rank the interventions evaluated. Results: In total, 39 studies were included in the systematic review and NMA. According to the SUCRA value, the incidence of PHN was lower in the order of continuous epidural block with local anesthetics and steroids (EPI-LSE), antiviral agents with subcutaneous injection of local anesthetics and steroids (AV + sLS), antiviral agents with intracutaenous injection of local anesthetics and steroids (AV + iLS) at 3 months after acute HZ. EPI-LSE, AV + sLS and AV + iLS were also effective in preventing PHN at 1 month after acute HZ. And paravertebral block combined with antiviral and antiepileptic agents was effective in preventing PHN at 1, 3, and 6 months. Conclusions: The continuous epidural block with local anesthetics and steroid, antiviral agents with intracutaneous or subcutaneous injection of local anesthetics and a steroid, and paravertebral block combined with antiviral and antiepileptic agents are effective in preventing PHN.

The 2,3-Dihydroxybiphenyl 1,2-Dioxygenase Gene (phnQ) of Pseudomonas sp. DJ77: Nucleotide Sequence, Enzyme Assay, and Comparison with Isofunctional Dioxygenases

  • Kim, Seong-Jae;Shin, Hee-Jung;Park, Yong-Chjun;Kim, Young-Soo;Min, Kyung-Hee;Kim, Young-Chang
    • BMB Reports
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    • 제32권4호
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    • pp.399-404
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    • 1999
  • 2,3-Dihydroxybiphenyl 1,2-dioxygenase (2,3-DHBD), which catalyzes the ring meta-cleavage of 2,3-dihydroxybiphenyl, is encoded by the phnQ gene of biphenyl- and phenanthrene-degrading Pseudomonas sp. strain DJ77. We determined the nucleotide sequence of a DNA fragment of 1497 base pairs which included the phnQ gene. The fragment lncluded an open reading frame of 903 base pairs to accommodate the enzyme. The predicted amino acid sequence of the enzyme subunit consisted of 300 residues. In front of the gene, a sequence resembling an E. coli promoter was identified, which led to constitutive expression of the cloned gene in E. coli. The deduced amino acid sequence of the PhnQ enzyme exhibited 85.6% identity with that of the corresponding enzyme in Sphingomonas yanoikuyae Q1 (formerly S. paucimobilis Q1) and 22.1% identity with that of catechol 1,2,3-dioxygenase from the same DJ77 strain. PhnQ showed broader substrate preference than previously-cloned PhnE, catechol 2,3-dioxygenase. Ten amino acid residues, considered to be important for the role of extradiol dioxygenases, were conserved.

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인천.경기지역 보건소 간호사의 보건사업 수행에 관한 조사 연구 (A Survey on Health Service Activities of Public Health Nurses in Inchon & Kyung Gi Area)

  • 김명순
    • 지역사회간호학회지
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    • 제1권1호
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    • pp.88-102
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    • 1989
  • This survey was conducted in order to find out the degree of health service activities of Public Health Nurses & variables relevant to their activities. The subjects of this survey were 232 PHN in Health Centers, Inchon & Kyung Gi area. Data were collected by mean of questionairs from 30th, September to 30th, October, 1986. For the analysis, ANOVA was used. The results were as follows; 1. General characteristics of PHN: o An approximately four fifth of the subjects (82.3%) was between 20-39 years. o The average career length of the subjects as PHN was 4 years. o Their educational level was almost Nursing School (22.4%) Junior College of Nursing (53.4%). o The marital status of the subjects was already married (75.4%). 3. The degree of health service activities of PHN; o The total mean of health service activities was 2.147 (S.D: 1.477, range 11-5). o Among the 11 Health Service Categories; Health service planning (2.828) is the highest mean scored category. The lowest mean scored category was the other health services. o Among the specific activity items about the 11 health service categories, the highest scored activities were 'personal counselling & education' in well-baby care (2.504), family planning (2.530), Tb control (2.134), disease control (2.371), 'health history taking & health examination', in prenatal care, 'clinic care', in administrative service, 'record & report', in the other categories. o Almost categories (10), 'Home visiting' was the lowest scored activity. 3. The relevance for the health service activities by several variables were as follows; o The relevance for the health service activities by general characteristics of PHN was not shown significance at age, educational level, marital status, relegion status. o And at work place, & work department was shown high significance.

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Intravenous patient-controlled analgesia hydromorphone combined with pregabalin for the treatment of postherpetic neuralgia: a multicenter, randomized controlled study

  • Huang, Ying;Xu, Chenjie;Zeng, Tao;Li, Zhongming;Xia, Yanzhi;Tao, Gaojian;Zhu, Tong;Lu, Lijuan;Li, Jing;Huang, Taiyuan;Huai, Hongbo;Ning, Benxiang;Ma, Chao;Wang, Xinxing;Chang, Yuhua;Mao, Peng;Lin, Jian
    • The Korean Journal of Pain
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    • 제34권2호
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    • pp.210-216
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    • 2021
  • Background: Postherpetic neuralgia (PHN) is the most common complication of acute herpes zoster. The treatment of PHN remains a challenge for clinical pain management. Despite the effectiveness of anticonvulsants, antidepressants, and lidocaine patches in reducing PHN, many patients still face intractable pain disorders. In this randomized controlled study, we evaluated whether hydromorphone through intravenous patient-controlled analgesia (IV PCA) was effective in relieving PHN. Methods: Patients with PHN were randomly divided into two groups, one group received oral pregabalin with IV normal saline, another group received oral pregabalin with additional IV PCA hydromorphone for two weeks. Efficacy was evaluated at 1, 4, and 12 weeks after the end of the treatments. Results: Two hundred and one patients were followed up for 12 weeks. After treatment, numerical rating scale (NRS) score of patients in the hydromorphone group was significantly lower than that of the control group, and the difference of NRS scores between the two groups was statistically significant at 4 and 12 weeks after treatment. The frequency of breakthrough pain in the hydromorphone group was significantly lower than that in the control group 1 and 4 weeks after treatment. After treatment, the quality of sleep in the hydromorphone group was significantly improved compared with the control group. The most common adverse reactions in the hydromorphone group were dizziness and nausea, with no significant respiratory depression. Conclusions: IV PCA hydromorphone combined with oral pregabalin provides superior pain relief in patients with PHN, which is worthy of clinical application and promotion.