• 제목/요약/키워드: organism as a whole

검색결과 63건 처리시간 0.023초

Training Molecularly Enabled Field Biologists to Understand Organism-Level Gene Function

  • Kang, Jin-Ho;Baldwin, Ian T.
    • Molecules and Cells
    • /
    • 제26권1호
    • /
    • pp.1-4
    • /
    • 2008
  • A gene's influence on an organism's Darwinian fitness ultimately determines whether it will be lost, maintained or modified by natural selection, yet biologists have few gene expression systems in which to measure whole-organism gene function. In the Department of Molecular Ecology at the Max Planck Institute for Chemical Ecology we are training "molecularly enabled field biologists" to use transformed plants silenced in the expression of environmentally regulated genes and the plant's native habitats as "laboratories." Research done in these natural laboratories will, we hope, increase our understanding of the function of genes at the level of the organism. Examples of the role of threonine deaminase and RNA-directed RNA polymerases illustrate the process.

From the Sequence to Cell Modeling: Comprehensive Functional Genomics in Escherichia coli

  • Mori, Hirotada
    • BMB Reports
    • /
    • 제37권1호
    • /
    • pp.83-92
    • /
    • 2004
  • As a result of the enormous amount of information that has been collected with E. coli over the past half century (e.g. genome sequence, mutant phenotypes, metabolic and regulatory networks, etc.), we now have detailed knowledge about gene regulation, protein activity, several hundred enzyme reactions, metabolic pathways, macromolecular machines, and regulatory interactions for this model organism. However, understanding how all these processes interact to form a living cell will require further characterization, quantification, data integration, and mathematical modeling, systems biology. No organism can rival E. coli with respect to the amount of available basic information and experimental tractability for the technologies needed for this undertaking. A focused, systematic effort to understand the E. coli cell will accelerate the development of new post-genomic technologies, including both experimental and computational tools. It will also lead to new technologies that will be applicable to other organisms, from microbes to plants, animals, and humans. E. coli is not only the best studied free-living model organism, but is also an extensively used microbe for industrial applications, especially for the production of small molecules of interest. It is an excellent representative of Gram-negative commensal bacteria. E. coli may represent a perfect model organism for systems biology that is aimed at elucidating both its free-living and commensal life-styles, which should open the door to whole-cell modeling and simulation.

태반 및 제대에서의 특이적 세포구조물의 분리배양 (Isolation and Cultivation of Particular Cell Organism from Human Placenta and Umbilical Cord)

  • 손윤희;김소연;남경수;임종국
    • Korean Journal of Acupuncture
    • /
    • 제19권1호
    • /
    • pp.1-6
    • /
    • 2002
  • It was proposed that the substance of Kyungrak is a new anatomic-histological system in the living body and entirely different either from the nervous system or blood and lyphatic vessels. This system is covering the whole body, regulating and coordinating the biological processes that lie at the bottom of the vital activity. One of the substance of Kyungrak is acublast. The aim of this study was to isolate and culture the acublast from human placenta or blood of umbilical cord. It was found that particular cell organism isolate from placenta and cultured with RPMI 1640 contaning 10% FBS and hormones was grown for four weeks. Although this organism was different from blood cells morphologically, biochemical study of the organism is required to identify as the acublast.

  • PDF

수퍼 샘플링과 보간을 이용한 생물조직 영상의 면적 측정 (Area Measurement of Organism Image using Super Sampling and Interpolation)

  • 최선완;유숙현
    • 한국멀티미디어학회논문지
    • /
    • 제17권10호
    • /
    • pp.1150-1159
    • /
    • 2014
  • This paper proposes a method for extracting tissue cells from an organism image by an electron microscope and getting the whole cell number and the area from the cell. In general, the difference between the cell color and the background is used to extract tissue cell. However, there may be a problem when overlapped cells are seen as a single cell. To solve the problem, we split them by using cell size and curvature. This method has a 99% accuracy rate. To measure the cell area, we compute two areas, the inside and boundary of the cell. The inside is simply calculated by the number of pixels. The cell boundary is obtained by applying super sampling, linear interpolation, and cubic spline interpolation. It improves the error rate, 18%, 19%, and 120% respectively, in comparison to the counting method that counts a pixel area as 1.

Functional Genomic Approaches Using the Nematode Caenorhabditis elegans as a Model System

  • Lee, Jun-Ho;Nam, Seung-Hee;Hwang, Soon-Baek;Hong, Min-Gi;Kwon, Jae-Young;Joeng, Kyu-Sang;Im, Seol-Hee;Shim, Ji-Won;Park, Moon-Cheol
    • BMB Reports
    • /
    • 제37권1호
    • /
    • pp.107-113
    • /
    • 2004
  • Since the completion of the genome project of the nematode C. elegans in 1998, functional genomic approaches have been applied to elucidate the gene and protein networks in this model organism. The recent completion of the whole genome of C. briggsae, a close sister species of C. elegans, now makes it possible to employ the comparative genomic approaches for identifying regulatory mechanisms that are conserved in these species and to make more precise annotation of the predicted genes. RNA interference (RNAi) screenings in C. elegans have been performed to screen the whole genome for the genes whose mutations give rise to specific phenotypes of interest. RNAi screens can also be used to identify genes that act genetically together with a gene of interest. Microarray experiments have been very useful in identifying genes that exhibit co-regulated expression profiles in given genetic or environmental conditions. Proteomic approaches also can be applied to the nematode, just as in other species whose genomes are known. With all these functional genomic tools, genetics will still remain an important tool for gene function studies in the post genome era. New breakthroughs in C. elegans biology, such as establishing a feasible gene knockout method, immortalized cell lines, or identifying viruses that can be used as vectors for introducing exogenous gene constructs into the worms, will augment the usage of this small organism for genome-wide biology.

신장생리(腎臟生理)의 유기적 통일성과 그 병후(病候)에 관한 고찰 (A Holistic Study of the Physiology of the Kidney and its Symptom)

  • 서만완;김길훤
    • 동국한의학연구소논문집
    • /
    • 제7권2호
    • /
    • pp.1-8
    • /
    • 1999
  • 한의학은 유기체의 관점에서 생체기능의 통일성을 중요시하고 있다. 생체기능의 유기적 통일성은 기운(氣運)과 이치로 인식되며, 경락(經絡)은 기혈(氣血)의 매개를 통하여 장부(臟腑) 조직 기관의 사이를 밀접하게 연계하여 유기체에 대한 생리(生理) 병리(病理)의 보다 완전한 인식과 변증논치(辨證論治)의 이론적 근거를 제공하고 있다. 이러한 학문적 배경에 근거하여 신장(腎臟)생리의 유기성과 그 병후(病候)를 경기(經氣)의 교통(交通)을 중심으로 고찰하였다. 족소음신경(足少陰腎經)의 경기교통(經氣交通)은 신장(腎臟)과 간(肝) 폐(肺) 심(心) 방광(膀胱) 및 후롱 설본(舌本) 흉부(胸部) 족심(足心) 고내후염(股內後廉) 요(腰)의 형체조직(形體組織)과 밀접한 관계를 구축하여 협조(協助) 통일(統一)의 생리를 발휘하고, 병리적으로 신장(腎臟)의 병변(病變) 병후(病候)에 대한 유기적 인식을 가능케 한다. 따라서 신장(腎臟)과 그 경락(經絡)의 동시적 인식은 한의학의 이론과 임상의 실재에 부합되는 변증논치(辨證論治)의 관건이 된다고 사료(思料)된다.

  • PDF

Erwinia carotovora subsp. carotovora에 의한 셀러리 세균성 무름병 (Bacterial Soft Rot of Celery by Erwinia carotovora subsp. carotovora)

  • 박덕환;함영일;임춘근
    • 한국식물병리학회지
    • /
    • 제14권4호
    • /
    • pp.361-363
    • /
    • 1998
  • Occurrence of soft rots was observed on celery that was massively grown in Pyungchang, Kangwon-Do, Korea. Soft rot symptom appeared first on the lower parts of the celery which eventually extended into whole aboveground parts of it. The casual organism isolated from the infected lesions was identified as Erwinia carotovora subsp. carotovora based on the physiological and chemical characteristics, and on the results of the Biolog program (Biolog Inc., U. S. A.). E. carotovora subsp. carotovora is the first described bacterium which causes the bacterial soft rot disease on celery in Korea.

  • PDF

Cinema of Interval: Sergei Eisenstein′s Theory and Practice of Montage

  • Choe, Young-Jeen
    • 인문언어
    • /
    • 제2권1호
    • /
    • pp.259-284
    • /
    • 2002
  • In the history of cinema, Sergei Eisenstein is always considered as a pioneer to conceive of cinema primarily as a form of expressing thought rather than as a representation of reality. For him, montage is the indispensable method to construct an open totality of thought and image in movement. It functions as a basic thread running through two poles of filmic composition, that is, the organic and the pathetic. The organic is concerned with the composition of the film structure as a whole, while the pathetic is involved in an ongoing process of registering a leaping point in various filmic sequences. The ultimate goal of montage for Eisenstein is to create the cinema of ideas which can synthesize both emotional and intellectual elements in the filmic composition. In his system of intellectual cinema, the identity of image and thought externalizes the sensory-motor unity of nature and man along the ascending spiral of centrifugal force of the film. Indeed, in both theory and practice, Eisenstein firmly argues that nature not only provides basic laws for the organic composition of the film, but also expresses itself in the form of the whole which brings out the experience of totality in the film text, the audience, and surely Eisenstein himself.

  • PDF

Bacterial Soft Rot of Dendrobium phalaenopsis and Phalaneopsis Species by Erwinia chrysanthemi

  • Lee, Dong-Hyun;Kim, Jung-Ho;Lee, Jae-Hong;Hur, Jae-Seoun;Koh, Young-Jin
    • The Plant Pathology Journal
    • /
    • 제15권5호
    • /
    • pp.302-307
    • /
    • 1999
  • Occurrence of soft rots was observed on Dendrobium phalaenopsis and Phalaenopsis sp. that were grown at the greenhouses in Sunchon and Kwangyang areas, Chonnam province of Korea in 1997 and 1998. Typical soft rot symptom appeared frequently on young plants of D. phalaenopsis and Phalaenopsis sp. Soft rot symptom usually appeared on old leaves of D. phalaenopsis, and extended into whole leaves, accompanying blighting of whole plants. Symptom began as a small water-soaked lesion on old leaves of Phalaenopsis sp., which enlarged rapidly on the leaves and eventually resulted in soft rots of whole plants. The causal organism isolated from the infected lesions was identified as Erwinia chrysanthemi based on its pathogenicity, physiological and biochemical characteristics, and the results of the BIOLOGTM program. The bacterial soft rot caused by e. chrysanthemi was firstly describe din D. phalaenopsis and Phalanopsis sp. in Korea.

  • PDF

체다치즈의 숙성 전과정에 대한 수학식 (A Mathematical Model for the Whole Ripening Process of Cheddar Cheese)

  • 김중균
    • KSBB Journal
    • /
    • 제9권1호
    • /
    • pp.72-84
    • /
    • 1994
  • 치즈의 숙성 전과정을 잘 설명하여 줄 수 있는 수학식을 만들었다. X(0)와 $e_2$(0) 및 $k_1$값들을 증가시킴으로써 숙성과정을 촉진시킬 수 있었고 낮은 $k_2$값과 높은 $a_2$값을 가지는 신 균주의 탐색도 필요도하다는 것을 알았다. 그러나, 치즈 숙성과정 중 나쁜 치즈맛의 생산을 피하기 위하여서는 낮은 단백질 분해요소 활동도를 갖는 균주가 절대적으로 필요하다. 따라서 이 제안된 수학적 모델식은 치즈덩어리 내에서 일어나는 효소반응들을 잘 묘사하고 있으며, 궁극적으로는 값싸고 질 좋은 치즈를 생산하는데 유용할 것이다.

  • PDF