• Title/Summary/Keyword: ontology design

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Design and Construction of a NLP Based Knowledge Extraction Methodology in the Medical Domain Applied to Clinical Information

  • Moreno, Denis Cedeno;Vargas-Lombardo, Miguel
    • Healthcare Informatics Research
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    • v.24 no.4
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    • pp.376-380
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    • 2018
  • Objectives: This research presents the design and development of a software architecture using natural language processing tools and the use of an ontology of knowledge as a knowledge base. Methods: The software extracts, manages and represents the knowledge of a text in natural language. A corpus of more than 200 medical domain documents from the general medicine and palliative care areas was validated, demonstrating relevant knowledge elements for physicians. Results: Indicators for precision, recall and F-measure were applied. An ontology was created called the knowledge elements of the medical domain to manipulate patient information, which can be read or accessed from any other software platform. Conclusions: The developed software architecture extracts the medical knowledge of the clinical histories of patients from two different corpora. The architecture was validated using the metrics of information extraction systems.

A Design of the Ontology for Enhanced Semantic Retrieval of Multimedia Contents (멀티미디어 콘텐츠의 강화된 의미 검색을 위한 온톨로지 설계)

  • Kim, Sun-Kyung;Shin, Pan-Seop;Lim, Hae-Chull
    • Journal of Internet Computing and Services
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    • v.13 no.1
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    • pp.107-115
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    • 2012
  • In recent Information Environment, various Multimedia contents are getting noticed. But, since these contents have various formats of representation and very wide range of information, it was difficult to retrieve contents that user wanted and to utilize it. To solve these problems, many studies presented draft standards for adding metadata to contents, and then, semantic search for contents had become available. Unfortunately, as the number of metadata standards and contents increased, the lack of interoperability between contents was begun and users are faced with difficulty of search contents again. To improve these problems, this paper supports interoperability between metadata standards and expands the semantic relationship between elements and proposes an ontology which is named TOFIC(The Ontology For Imagery Contents) for enhanced semantic search. In TOFIC, the semantic relationships between MPEG-7 and TV-Anytime are classified, and extended new semantics are defined. As a result, semantic search for multimedia contents is enhanced and it is possible to retrieve most of the multimedia contents that exist on the current information environment consistently. In addition, it supports enhanced content-based search for multimedia contents.

A Design of semantic web-based fish drug information system (시맨틱 웹기반 수산용 의약품 정보시스템 설계)

  • Ceong, Hee-Taek;Kim, Hae-Ran;Han, Soon-Hee
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.14 no.1
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    • pp.145-155
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    • 2010
  • In this paper, we suggest a fish drug domain ontology to show an associated information and hierarchy together through concept-relation and inference mechanism instead of keyword matching. First, we investigate competency questions from workers of fishery industry and then we derive concepts and terminologies. Next, we present a process of fish drug ontology modelling using Protege-OWL editor, which is an extension of Protege that supports the Web Ontology Language(OWL). Last, we suggest the user interface of semantic web-based fish drug information system to search easily associated informations of fish drug using this ontology. It is to provide an effective search method that fish disease manager, fish farmer, and students majoring in fisheries can confirm details of diseases, fish, and drug evaluations associated with fish drug within one screen without moving to another position.

A Study on Construction of Domain Ontology in Third-party Logistics (제3자 물류 환경에서 도메인 온톨로지 구축)

  • Gao, Li;Koh, Jin-Gwang;Bae, Si-Yeong;Lee, Hyun-Chang;Choi, Hyun-Ho
    • Journal of the Korea Society of Computer and Information
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    • v.16 no.4
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    • pp.235-241
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    • 2011
  • A large number of industry and trade circulation enterprises integrate logistics resource. They give links of product transport to some professional logistics enterprises in order to reduce costs. We call these professional logistics enterprises as the Third-party Logistics. As the development of the computer and internet, the suppliers, buyers and the Third-party Enterprises connect each other with internet. And different company use different management software, so heterogeneous data become a big problem of the information system for Third-party Enterprises. We built the logistics ontology with prot$\'{e}$g$\'{e}$, and translate it in OWL. We also built the rules for Logistics Ontology to improve the limitations of the OWL. Then we design the intelligent system for 3PL Enterprises Distribution Center based on Logistics Ontology and Logistics Rules. At final, we give an example to show the workflow visually.

PubMine: An Ontology-Based Text Mining System for Deducing Relationships among Biological Entities

  • Kim, Tae-Kyung;Oh, Jeong-Su;Ko, Gun-Hwan;Cho, Wan-Sup;Hou, Bo-Kyeng;Lee, Sang-Hyuk
    • Interdisciplinary Bio Central
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    • v.3 no.2
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    • pp.7.1-7.6
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    • 2011
  • Background: Published manuscripts are the main source of biological knowledge. Since the manual examination is almost impossible due to the huge volume of literature data (approximately 19 million abstracts in PubMed), intelligent text mining systems are of great utility for knowledge discovery. However, most of current text mining tools have limited applicability because of i) providing abstract-based search rather than sentence-based search, ii) improper use or lack of ontology terms, iii) the design to be used for specific subjects, or iv) slow response time that hampers web services and real time applications. Results: We introduce an advanced text mining system called PubMine that supports intelligent knowledge discovery based on diverse bio-ontologies. PubMine improves query accuracy and flexibility with advanced search capabilities of fuzzy search, wildcard search, proximity search, range search, and the Boolean combinations. Furthermore, PubMine allows users to extract multi-dimensional relationships between genes, diseases, and chemical compounds by using OLAP (On-Line Analytical Processing) techniques. The HUGO gene symbols and the MeSH ontology for diseases, chemical compounds, and anatomy have been included in the current version of PubMine, which is freely available at http://pubmine.kobic.re.kr. Conclusions: PubMine is a unique bio-text mining system that provides flexible searches and analysis of biological entity relationships. We believe that PubMine would serve as a key bioinformatics utility due to its rapid response to enable web services for community and to the flexibility to accommodate general ontology.

Design and Implementation of Ontology-Based Natural Language Search System (온톨로지 기반의 자연어 검색 시스템 설계 및 구현)

  • Kang, Rae-Goo;Lim, Dong-Il;Jung, Chai-Yeoung
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2007.10a
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    • pp.875-878
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    • 2007
  • Up until now, when a user search product information, the keyword-based search that mainly uses frequency of words or vocabulary information has been utilized in large. In the keyword-based research, the user should have to bear additional burden in order to search the displayed results manually once again because it shows those files that have no connection at all with the inquiries made by the user. To resolve such a problem, ontology has been emerged. In this paper, product search system using ontology was constructed directly and also tested how accurate search it does perform through the searching according to classification. To test this, about 40,000 product data of A discount store, which was operating on/off line discount stores, were constructed as database, and developmental environment for User Interface was tested by having developed the search system using JSP and PowerBuilder 9.0. Results from the test proved that the search method using Domain Ontology for product presented and designed in this paper was superior to the existing keyword-based search method.

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A Design and Implementation of National R&D Reference Information Ontology Based on URI Server (URI 서버에 기반한 국가 R&D 기반정보 온톨로지 설계 및 구현)

  • Jung, Han-Min;Kang, In-Su;Koo, Hee-Kwan;Lee, Seung-Woo;Sung, Won-Kyung
    • Journal of Information Management
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    • v.37 no.2
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    • pp.109-136
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    • 2006
  • The development of Semantic Web basically requires knowledge which is induced by the formalization and semantization of information, and thus ontology should be introduced as a knowledgization tool. URI(Uniform Resource Identifier) is an indispensible scheme to uniquely indicate individuals on ontology. However, it is difficult to find the use cases of identifiers or URIs in real data sets including science & technology publications. This paper describes the method to construct, manage, and serve reference information based on URI which is a crucial component on establishing national R&D reference information ontology. We expect the reference information which was acquired from about 7,000 proceeding papers would be adopted to Semantic Web applications such as researcher network analysis and outcome statistics.

Semantic Grid Management System based on the Ontology of Application Software (응용 프로그램 온톨로지 기반 시맨틱 그리드 관리 시스템)

  • Kim, Min-Sung;Yi, Gwan-Su
    • Journal of the Korea Society of Computer and Information
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    • v.13 no.3
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    • pp.65-75
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    • 2008
  • Grid Computing has enabled enormous amount of computational jobs by connecting distributed computing resources. This technology has developed and widely used in various fields. Previous researches usually focused on how to efficiently manage and use the grid resources. However, there was not enough tries to understand and manage information of application softwares in a well-defined structure. Therefore users in application domain need to how about grid deeply to identify and describe the resource requirements matching for each jobs. We introduce a semantic grid management system based on application ontology to overcome this problem. We design and implement the ontology to store various information of the applications. With the ontology, this system can infer the resource requirements from input parameters and input data of the application software and automatically assign appropriate resources by matching the requirement. Also it can transform the information to other forms which grid middlewares can handle. We apply the system to construct an analysis environment of bioinformatics and compare it with other grid systems to explain usefulness of the system.

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