• ALGAE
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• v.36 no.4
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• pp.263-283
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• 2021

To explore the ecophysiological characteristics of the kleptoplastidic dinoflagellate Shimiella gracilenta, we determined its spatiotemporal distribution in Korean coastal waters and growth and ingestion rates as a function of prey concentration. The abundance of S. gracilenta at 28 stations from 2015 to 2018 was measured using quantitative real-time polymerase chain reaction. Cells of S. gracilenta were detected at least once at all the stations and in each season, when temperature and salinity were 1.7-26.4℃ and 9.9-35.6, respectively. Moreover, among the 28 potential prey species tested, S. gracilenta SGJH1904 fed on diverse prey taxa. However, the highest abundance of S. gracilenta was only 3 cells mL^-1 during the study period. The threshold Teleaulax amphioxeia concentration for S. gracilenta growth was 5,618 cells mL^-1, which was much higher than the highest abundance of T. amphioxeia (667 cells mL^-1). Thus, T. amphioxeia was not likely to support the growth of S. gracilenta in the field during the study period. However, the maximum specific growth and ingestion rates of S. gracilenta on T. amphioxeia, the optimal prey species, were 1.36 d^-1 and 0.04 ng C predator^-1 d^-1, respectively. Thus, if the abundance of T. amphioxeia was much higher than 5,618 cells mL^-1, the abundance of S. gracilenta could be much higher than the highest abundance observed in this study. Eurythermal and euryhaline characteristics of S. gracilenta and its ability to feed on diverse prey species and conduct kleptoplastidy are likely to be responsible for its common spatiotemporal distribution.

• Asian-Australasian Journal of Animal Sciences
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• v.2 no.3
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• pp.548-549
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• 1989

• Journal of Ecology and Environment
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• v.43 no.1
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• pp.73-83
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• 2019

Background: Habitat selectivity and ecology of freshwater fishes were studied in two selected streams and their junction point which consist a total of 39 microhabitats. The aims of this study were to describe the habitat preference and its availability to fish assemblage, as well as ecology, habitat use, and habitat characteristics. Methods: We collected fish with backpack electrofishing three times during August 2013, December 2013, and March 2014. Using a variation partitioning approach of R software, we studied the relationship of fish abundances with stream type, habitat type, and abundance of key macroinvertebrate taxa. Results: A total of 6554 fishes representing four species belonging to the family Cyprinidae were caught. A higher total fish abundance was recorded from Gereb Tsedo (4870; 74.3%) than from Elala stream (1684; 25.7%). Taking both streams together, the overall total relative fish abundance was significantly higher in pools (53%) than in runs (35%) and in riffles (12%) at P < 0.05. Species-wise comparisons showed that 71%, 15%, 13%, and 1% of the pool fish community were occupied by Garra blanfordii, Garra ignestii, Garra dembecha, and Garra aethiopica, respectively. Stream type, habitat type, and key macroinvertebrate taxa each explained a significant proportion of the variation in fish abundance. Based on the variation partitioning approach, fish abundance was higher in Gereb Tsedo stream (P < 0.01). Moreover, fish abundance increased with pool habitat type (P < 0.01) and with availability of key macroinvertebrate taxa (P < 0.01). Conclusion: Fish abundance differed between stream types, among habitats and among key macroinvertebrate taxa availability. Among the factors, habitat type was the most important driving factor behind variation among fish abundances, and pool supports the highest fish abundance.

• The Korean Journal of Ecology
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• v.21 no.1
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• pp.15-26
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• 1998

This study was conducted to analyze arthropod community patterns in smallrice fields managed by different cultural methods [Conventional and Low Input Sustainable Agriculture(LISA)] in Suwon in 1995 and 1996. A half of nitrogen fertilizers and a quarter of pesticides were applied in the LISA field compared to in the conventional field. Total 15 orders and 43 families of arthropods were collected in two years. No differences were found in arthropod abundance and arthropod species composition between two differently practiced fields. The arthropod community was analyzed using guild categories. The arthropods were found in the order of 'pest(phytophag)>natural enemy>non-pest' in their densities. The pest species were mainly Homoptera and dominated by Delphacidae (Nilaparvata lugens Stal and Sogatella furcifera Horvath). They constituted > 80% of pest abundance. The spider was the most dominant group in the natural enemy and constituted > 90% of natural enemy abundance. Hunting spiders constituted > 60% of spider abundance and were dominated by Pirata subpiraticus Bos. et Str.(Lycosidae). Pachygnatha clerki Sundevall(Tetragnathidae), Gnathonarium dentatum Weider and Ummeliata angulituberis Oi(Erigonidae) were the dominant species in webbing spiders.

• Journal of Forest and Environmental Science
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• v.27 no.1
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• pp.17-22
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• 2011

Based upon the vegetation data of woody plants by plot sampling method in the natural deciduous forest of Mt. Jeombong, the study was carried out to examine importance value, rank abundance curve, and species abundance curve, and comparatively evaluate seven different species diversity indices for Shannon-Wiener index, Simpson index, McIntosh index, Log series, Margalef index, Berger-Parker index, and species richness, according to topographic positions. The minimal area which meant only few more species were increased was 3.48 ha in total. The dominant species of valley were Carpinus cordata, Acer pseudo-sieboldianum, Quercus mongolica, Acer mono, and Abies holophylla, and the dominant species of mid-slope were Quercus mongolica, Acer pseudo-sieboldianum, Carpinus cordata, Tilia amurensis, and Fraxinus rhynchophylla. Moreover, the dominant species of ridge were Quercus mongolica, Acer pseudo-sieboldianum, Tilia amurensis, Fraxinus rhynchophylla, and Acer mono. According to rank abundance curve and species abundance curve, species evenness was also low. All of Log series, species richness, Margalef, and Shannon-Wiener index discriminated that valley had the highest diversity, and ridge had the lowest diversity; but, Simpson index, McIntosh index, and Berger-Parker index represented that mid-slope had the highest diversity, and ridge had the lowest diversity. Uniquely, in Berger-Parker index, mid-slope was the higher value than total.

• Journal of the Korean Institute of Landscape Architecture
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• v.30 no.3
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• pp.73-85
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• 2002

The purpose of this study was to develop prediction models for plant species abundance by stream restoration. Generally the stream plant is affected by stream gemophology. So in this study, the relationship between the vegetation abundance and stream gemophology was developed by multiple regression analysis. The stream characteristics utilized in this study were longitudinal slope, transectional slope, micro-landforms through the longitudinal direction, riparian width and geometric mean diameter and biggest diameter of bed material, and cumulated coarse and fine sand weight portion. The Pyungchang River with mountainous watershed and the Kyungan stream and the Bokha stream in the agricultural region were selected and vegetation species abundance and stream characteristics were documented from the site at 2~3km intervals from the upper stream to the lower. The Models for predicting the vegetation abundance were developed by multiple regression analysis using SPSS statistics package. The linear relationship between the dependant(species abundance) and independant(stream characteristics) variables was tested by a graphical method. Longitudinal and transectional slope had a nonlinear relationship with species abundance. In the next step, the independance between the independant variables was tested and the correlation between independant and dependant variables was tested by the Pearson bivariate correlation test. The selected independant variables were transectional slope, riparian width, and cumulated fine sand weight portion. From the multiple regression analysis, the $R^2$for the Pyungchang river, Kyungan stream, Bokga stream were 0.651, 0.512 and 0.240 respectively. The natural stream configuration in the Pyungchang river had the best result and the lower $R^2$for Kyunan and Bokha stream were due to human impact which disturbed the natural ecosystem. The lowest $R^2$for the Bokha stream was due to the shifting sandy bed. If the stream bed is fugitive, the prediction model may not be valid. Using the multiple regression models, the vegetation abundance could be predicted with stream characteristics such as, transection slope, riaparian width, cumulated fine sand weigth portion, after stream restoration.

• ALGAE
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• v.32 no.3
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• pp.189-197
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• 2017

To quantify the abundance of the harmful dinoflagellate Cochlodinium polykrikoides in natural seawaters, we developed the innovative procedure using a droplet digital PCR (ddPCR) with C. polykrikoides-specific primers targeting the internal transcription sequence (ITS). The abundance of C. polykrikoides was estimated by the specific copy number of target ITS DNA segments per cell in cultures and natural water samples. The copy number per C. polykrikoides cell as acquired by ddPCR was $157{\pm}16$, which was evaluated against known cell numbers through a simplified protocol preparing DNAs. The abundances of C. polykrikoides in the waters of different locations estimated by ddPCR agreed with the number of cells visually counted under a microscope. This protocol was used to measure the abundance of C. polykrikoides close to and further off the southern coast of Korea in August of 2016 and 2017. The practical application showed that this method can reduce time for analysis and increase accuracy.

• ALGAE
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• v.35 no.3
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• pp.225-236
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• 2020

Gymnodinium smaydae is a newly described mixotrophic dinoflagellate that feeds on only Heterocapsa spp. and Scrippsiella acuminata among 19 tested algal prey. It is one of the fastest growing dinoflagellates when feeding, but does not grow well without prey. To investigate its spatial-temporal distributions in Korean waters, we quantified its abundance in water samples that were seasonally collected from 28 stations along the Korean Peninsula from April 2015 to October 2018, using quantitative real-time polymerase chain reactions. This dinoflagellate had a wide distribution, as reflected by the detection of G. smaydae cells at 23 of the sampling stations. However, this distribution had a strong seasonality; it was detected at 21 stations in the summer and only one station in winter. The abundance of G. smaydae was significantly and positively correlated with chlorophyll a concentration as well as with water temperature. However, there were no significant correlations between the abundance of G. smaydae and salinity, concentrations of nutrients, or dissolved oxygen concentration. During the study period, G. smaydae was present when water temperatures were 7.6-28.0℃, salinities were 9.6-34.1, concentrations of NO₃ were not detectable-106.0 μM, and concentrations of PO₄ were not detectable-3.4 μM. The highest abundance of G. smaydae was 18.5 cells mL^-1 in the coastal waters of Jinhae in July 2017 when the chlorophyll a concentration was 127 mg m^-3 and water temperature was 23.8℃. Therefore, the spatial-temporal distribution of G. smaydae in Korean coastal waters may be affected by chlorophyll a concentration and water temperature.

• ALGAE
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• v.37 no.4
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• pp.281-291
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• 2022

Quantifying the abundance of Chattonella species is necessary to effectively manage the threats from ichthyotoxic raphidophytes, which can cause large-scale mortality of aquacultured fish in temperate waters. The identification and cell counting of Chattonella species have been conducted primarily on living cells without fixation by light microscopy because routine fixatives do not retain their morphological features. Species belonging to the Chattonella marina complex, including C. marina and C. marina var. ovata, had high genetic similarities and the lack of clear morphological delimitations between the species. To estimate the abundance of C. marina complex in marine plankton samples, we developed a protocol based on the droplet digital polymerase chain reaction (ddPCR) assay, with C. marina complex-specific primers targeting the internal transcribed spacer (ITS) region of the rDNA. Cell abundance of the C. marina complex can be determined using the ITS copy number per cell, ranging from 25 ± 1 for C. marina to 112 ± 7 for C. marina var. ovata. There were no significant differences in ITS copies estimated by the ddPCR assay between environmental DNA samples from various localities spiked with the same number of cells of culture strains. This approach can be employed to improve the monitoring efficiency of various marine protists and to support the implementation of management for harmful algal blooms, which are difficult to analyze using microscopy alone.

• Journal of Apiculture
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• v.34 no.2
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• pp.141-147
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• 2019

Pollinators play important roles for crop production as well as maintenance of wild plants' reproduction. Pollinator dependency in Korean agriculture have increased, but the degradation of habitat quality pose significant threats to pollination in agroecosystem. Provisioning flower habitat is one of the major activities to increase pollinator abundance and richness. We tested the effect of flower habitat supplementation on the pollinator, pest and natural enemy abundance in pepper field. Results showed that Hymenopteran pollinators were more abundant in the pepper plots close to the flower habitat. Among natural enemies, the similar pattern from pollinators was observed to parasitoids in the family of Eulophidae, but not to those of Ichneumonidae. There were no statistically significant differences of insect pests like aphids and thrips, as well as pepper production among plots in the pepper field. Even limited spatial scale, this study showed supplementing the flowering plant habitat to the agricultural landscape could conserve and boost pollinators and natural enemies, and possibly resulting better fruit production by pollination service.