• Title/Summary/Keyword: mutation breeding

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Studies on the Construction of Mutant Diversity Pool (MDP) lines, and their Genomic Characterization in Soybean

  • Dong-Gun Kim;Sang Hoon Kim;Chang-Hyu Bae;Soon-Jae Kwon
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2021.04a
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    • pp.9-9
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    • 2021
  • Mutation breeding is useful for improving agronomic characteristics of various crops. In this study, we constructed soybean Mutant Diversity Pool (MDP) from 1,695 gamma-irradiated mutants through two selection phases over M1 to M12 generations; we selected 523 mutant lines exhibiting at least 30% superior agricultural characteristics, and, second, we eliminated redundant morphological phenotypes in the M12 generation. Finally, we constructed 208 MDP lines and investigated 11 agronomic traits. We then assessed the genetic diversity and inter-relationships of these MDP lines using target region amplification polymorphism (TRAP) markers. Among the different TRAP primer combinations, polymorphism levels and PIC values averaged 59.71% and 0.15, respectively. Dendrogram and population structure analyses divided the MDP lines into four major groups. According to an analysis of AMOVA, the percentage of inter-population variation among mutants was 11.320 (20.6%), whereas mutant inter-population variation ranged from 0.231 (0.4%) to 14.324 (26.1%). Overall, the genetic similarity of each cultivar and its mutants were higher than within other mutant populations. In an analysis of the genome-wide association study (GWAS) using based on the genotyping-by-sequencing (GBS), we detected 66 SNPs located on 13 different chromosomes were found to be highly associated with four agronomic traits: days of flowering (33 SNPs), flower color (16 SNPs), node number (6 SNPs), and seed coat color (11 SNPs). These results are consistent with those previously reported for other genetic resource populations, including natural accessions and recombinant inbred line. Our observations suggest that genomic changes in mutant individuals induced by gamma rays occurred at the same loci as those of natural soybean population. This study has demonstrated that the integration of GBS and GWAS can serve as a powerful complementary approach to gamma-ray mutation for the dissection of complex traits in soybean.

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Molecular Breeding of Phenylalanine Producing E. coli Containing Temperature-Controllable Vector (온도조절형(溫度調節型) 발현(發現) Vector를 함유한 Phenylalanine 생산균(生産菌)의 분자육종(分子育種))

  • Shim, Sang-Kook;Lee, Young-Chun;Chung, Ho-Kwon;Chung, Dong-Hyo
    • Applied Biological Chemistry
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    • v.38 no.1
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    • pp.13-19
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    • 1995
  • In order to produce phenylalanine without tyrosine co-production, we constructed various temperature-controllable expression vectors by insertion of lower expression of the tyrA gene into the plasmid pSY130-14. And tyrosine revertant to cultivate without addition of tyrosine, was selected from Escherichia coli strain AT2471[tyrA , thi ] by spontaneous mutation. The strain AT2471 harbouring plasmid pSY146A and the tyrosine revertant 5 harbouring plasmid pSY111-14 produced 12 g/l and 15 g/l of phenylalanine respectively in a 2.5 l jar fermenter at a constant temperature of $39^{\circ}C$ after 55 hours cultivation.

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New Cultivar 'White Edge' of Leaf Variegated Hosta minor (좀비비추의 잎변이 품종 'White Edge' 육성)

  • Kim, Hyun Jin;Lee, Jong Suk;Park, Kwang Woo;Kim, Sik Sung
    • Korean Journal of Plant Resources
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    • v.26 no.4
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    • pp.516-518
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    • 2013
  • A new leaf variegated cultvar 'White Edge' was developed by ethyle methane sulfonate(EMS) treatment on seed of Hosta minor. Among induced leaf variegated plant, some with white color on the edge of the leaves was selected. They were cultivated via vegetative propagation. 'White Edge' was finally selected through the test of characteristics from 2003 to 2005. Assessment of botanical characteristics was conducted for three years. The major characteristic of these cultivar is that they maintain uniformly all year round. 'White Edge'(Grant No.1880) was registered to the Korea Seed and Variety Service(KSVS) for commercialization in 2007. These cultivar are useful as materials for pot or as ground cover plants.

Effect of Gamma Ray on Germination, Growth and Antioxidant Activity of Senna tora (감마선 조사가 결명자의 생육과 항산화 활성에 미치는 영향)

  • Um, Min;Kang, Si Yong;Lee, Jae Won;Lee, Ok Ran
    • Korean Journal of Medicinal Crop Science
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    • v.25 no.5
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    • pp.290-295
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    • 2017
  • Background: Senna tora is a flowering plant in the legume family Fabaceae. Its seeds are roasted and consumed as tea in Asia, to reduce inflammation in the liver and improve eyesight. Thus, it has been considered as an important medicinal crops in Asia. However, breeding trials to improve its genetic properties are rare. Mutation breeding by gamma ray is known to be an effective and highly successful approach for the generation of agronomically useful cultivars. Here we analyzed the effects of several dosages of gamma ray on the biological conditions of Senna tora seeds. Methods and Results: The germination rate and growth patterns of Senna tora were examined following irradiation with gamma ray at 100, 200, 300 and 400 Gy. The total phenolic compound contents and antioxidant activities of Senna tora were analyzed. Germination increased at 100 and 200 Gy in the M1 and M2 generations compared with that of the control (M0). The total phenolic compound contents and antioxidant activity of the seeds significantly decreased as the radiation dosage increased above 100 Gy in the M1 generation. Conclusions: Senna tora, irradiated with gamma ray at dosages 100, 200, 300, and 400 Gy, showed maximum germination rate at 200 Gy in the M2 generation. Plant height and leaf size gradually decreased with increasing gamma ray intensity in the M2 generation. The total phenolic compound contents decreased significantly at 400 Gy, and the related antioxidant activity was also decreased as the radiation dosage increased.

Ownership Guidelines of Essentially Derived Varieties in Floricultural Breeding Companies (화훼류 변이주의 소유권에 관한 종묘회사별 지침)

  • Park, In Sook;Lim, Ki Byung
    • FLOWER RESEARCH JOURNAL
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    • v.17 no.3
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    • pp.208-213
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    • 2009
  • Since International Union for the Protection of New Varieties of Plants (UPOV) was established in 1968, the number of joined nations is getting increasing and the regime for variety protection was intensified. Korea joined as the 50th member nation in UPOV. A lot of floricultural plants including rose and chrysanthemum from foreign countries have been applied and registered by Korea Seed and Variety Service (KOSID). Since Korea is one of the importing countries in cut flowers and bulbs, paying royalty is a big burden. Now we are to identify the policy on handling of a mutant from essentially derived varieties (EDV) and relation of a finder (or grower) and breeder by different companies in each country. As a result, the rights are provided not to a finder but to a breeder (breeding company) in most industries. Second, grower's rights are recognized, but in case of the mutant is commercialized, a grower and a breeder should come to a mutual agreement. Third, there is a kind of compensation system for the finder of the mutant.

Variation of Agronomic Traits of Rice Mutant Lines Induced by Sodium Azide

  • Shin, Young-Seop;Jeon, Yong-Hee;Kang, Kyung-Ho;Seo, Yong-Weon;Jeung, Ji-Ung
    • Korean Journal of Breeding Science
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    • v.41 no.2
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    • pp.92-100
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    • 2009
  • To investigate the mutagenecity of sodium azide (SA) and to select mutants having various agronomic characteristics in rice (Oryza sativa L. ssp. japonica), dry seeds of rice variety 'Suweon 472' were treated with 0, 0.5, 1.0, 2.0, and 4.0 mM SA solutions prepared in 0.1 M phosphate buffer (pH 3.0). Germination rate, seedling height and sterility were investigated in $M_1$ generation and chlorophyll mutations were observed in $M_3$ generation. Germination rate and seedling height decreased as the increase of SA concentration in $M_1$ generation, the maximum seed sterility (40.8%) was found at 4.0 mM SA concentration. Chlorophyll mutants were occurred in $M_3$ generation and the frequency calculated on a line basis was 13.5% at the same treatment. Many kinds of mutations for morphological and agronomic characters were observed and mutations with short culm and glabrous leaf were frequently found in $M_3$ generation. Interestingly, five mutant lines resistant to blast or bacterial blight (BB) were selected and evaluated with several isolates in $M_3$ generation although Suweon 472 has been known to be susceptible to blast and BB. These mutants showed all resistance to seven isolates of blast and a total of 76 lines among 2,567 lines evaluated showed resistant to race K1 of bacterial blight. Two mutant lines (440172 and 41272) showed different reaction to BB isolates from the other resistant mutants. A few kinds of endosperm mutants were also identified and most of them were waxy mutants.

New Cultivar 'Hwangnarae' of Leaf Color Variegated Hosta minor Developed by EMS Treatment (EMS 처리에 의한 좀비비추[Hosta minor (Baker) Nakai]의 엽색변이 품종 '황나래' 육성)

  • Kim, Jin-Ho;Lee, Jong Suk;Oh, Hye Jin;Kim, Sang Yong;Kim, Hee Chae
    • Korean Journal of Plant Resources
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    • v.34 no.2
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    • pp.172-176
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    • 2021
  • The Hosta 'Hwangnarae' was bred at the Korea National Arboretum, which was induced using ethyl-methanesulfonate (EMS) to obtain mutants. Among the leaf variegated Hosta plants, some with yellowish-green color pattern on the edge of the leaves was selected. They were cultivated through vegetative production. Assessment of the botanical characteristics was executed for six years from 2013 to 2018. Major characteristics such as yellowish-green color pattern on the edge of leaves appeared uniformly and was finally selected in 2019. The Hosta 'Hwangnarae' that have been bred in this way can prove to be useful as material for a ground cover plant or pot plant.

Association analysis of polymorphisms in six keratin genes with wool traits in sheep

  • Sulayman, Ablat;Tursun, Mahira;Sulaiman, Yiming;Huang, Xixia;Tian, Kechuan;Tian, Yuezhen;Xu, Xinming;Fu, Xuefeng;Mamat, Amat;Tulafu, Hanikezi
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.6
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    • pp.775-783
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    • 2018
  • Objective: The purpose of this study was to investigate the genetic effects of six keratin (KRT) genes on the wool traits of 418 Chinese Merino (Xinjiang type) (CMXT) individuals. Methods: To explore the effects and association of six KRT genes on sheep wool traits, The polymerase chain reaction-based single-strand conformation polymorphism (PCR-SSCP), DNA sequencing, and the gene pyramiding effect methods were used. Results: We report 20 mutation sites (single-nucleotide polymorphisms) within the six KRT genes, in which twelve induced silent mutations; five induced missense mutations and resulted in $Ile{\rightarrow}Thr$, $Glu{\rightarrow}Asp$, $Gly{\rightarrow}Ala$, $Ala{\rightarrow}Ser$, $Se{\rightarrow}His$; two were nonsense mutations and one was a same-sense mutation. Association analysis showed that two genotypes of the KRT31 gene were significantly associated with fiber diameter (p<0.05); three genotypes of the KRT36 gene were significantly associated with wool fineness score and fiber diameter (p<0.05), three genotypes of the KRT38 gene were significantly associated with the number of crimps (p<0.05); and three genotypes of the KRT85 gene were significantly associated with wool crimps score, body size, and fiber diameter (p<0.05). Analysis of the gene pyramiding effect between the different genotypes of the gene loci KRT36, KRT38, and KRT85, each genotype in a gene locus was combined with all the genotypes of another two gene loci and formed the different three loci combinations, indicated a total of 26 types of possible combined genotypes in the analyzed population. Compared with the other combined genotypes, the combinations CC-GG-II, CC-HH-IJ, CC-HH-JJ, DD-HH-JJ, CC-GH-IJ, and CC-GH-JJ at gene loci KRT36, KRT38, and KRT85, respectively, had a greater effect on wool traits (p<0.05). Conclusion: Our results indicate that the mutation loci of KRT31, KRT36, KRT38, and KRT85 genes, as well as the combinations at gene loci KRT36, KRT38, and KRT85 in CMXT have significant effects on wool traits, suggesting that these genes are important candidate genes for wool traits, which will contribute to sheep breeding and provide a molecular basis for improved wool quality in sheep.

The Exon 2 Deletion of the COMMD1 Causing Copper Toxicosis in Bedlington Terriers in Korea (한국 베들링턴 테리어에서 구리중독증을 유발하는 COMMD1 유전자의 exon 2 결손변이)

  • Kim, Yun-Gi;Kim, So-Yeon;Yun, Young-Min
    • Journal of Veterinary Clinics
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    • v.32 no.1
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    • pp.1-4
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    • 2015
  • This study was performed to survey prevalence of Copper metabolism domain containing 1 (COMMD1) mutation using molecular diagnostic method in a population of Bedlington terriers in Korea. COMMD1 gene (formerly MURR1) functions as a regulator of sodium transport and copper metabolism. The deletion of exon 2 of the COMMD1 gene causes copper toxicosis in Bedlington terriers. Bedlington terriers with this autosomal recessive disorder were shown to have the elevated liver copper levels due to genetic derangement in the biliary copper excretion pathway. DNA samples were extracted from whole blood collected from 257 Bedlington terriers (109 males, 148 females) of pet dog clubs in Korea. A multiplex PCR was carried out to detect of exon 2 deletion of COMMD1 gene. In this study, it was possible to know the existence and prevalence of exon 2 deletion of COMMD1 in Bedlington terriers in Korea. Of the 257 samples, 131 (51%) were wild type homozygous for the normal COMMD1 gene, 108 (42%) were heterozygous, having both normal and mutated copy of the COMMD1 gene. The eighteen (7%) were mutant type homozygous. The results of genetic analysis could help establish proper management strategy and selective breeding program to prevent COMMD1 mutation in Bedlington terriers in Korea.

Improvement of Mutation Rate and Reduction of Somatic Effects by Double Treatment of Chemical Mutagens in Barley (화학 돌연변이제 이중처리에 의한 돌연변이율 향상 및 생장저해 경감)

  • 구본철
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.41 no.3
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    • pp.348-353
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    • 1996
  • Mutation tachniques inducing more useful mutations and reducing somatic effects need to be improved for crop breeding. Seeds of barley varieties ; Dema, Grosso were treated with two types of mutagens ; 1) chemical treatment: single treatment or double treatment of two mutagens (N-nitroso-N-methylurea ; MNH, Sodium Azide; NaN$_3$) 2) gamma ray irradiation treatment. After treatment, half of seeds were used for germination test and half of seeds were sown to the field. With the higher dose of mutagen both chemical and gamma ray were plants treated, the higher rate of growth reduction rate was in M$_1$ seedling. In chemical treatment, germination rate of seeds, growth rate of coleoptile and root in double treatment of chemical mutagens were better than single treatments, especially in same dose. Growth inhibition rate of plant in double treatment of 1.0mM MNH(0.5mM MNH + 0.5mM MNH), for example, were less than one of plants of single treatment of 1.0mM MNH in pot and petri dish test. Growth reduction rate of culm and fertility rate in M$_1$ plants double treated in same dose of single treatment were also less than single one. With the higher dose of mutagen both chemical and gamma ray were plants treated, the higher frequency of chlorophyll mutants was in M$_2$ seedling. The rate of chlorophyll mutants in double treatment of chemical mutagens were higher than single treatment. Double treatment methods can be a improved method for induction of new good mutants, which were induced more useful mutations and reduced harmful somatic effects.

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