• Title/Summary/Keyword: morphometric analysis

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Morphometric and genetic diversity of Rasbora several species from farmed and wild stocks

  • Bambang Retnoaji;Boby Muslimin;Arif Wibowo;Ike Trismawanti
    • Fisheries and Aquatic Sciences
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    • v.26 no.9
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    • pp.569-581
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    • 2023
  • The morphology and genetic identification of Rasbora lateristriata and Rasbora argyrotaenia between cultivated and wild populations has never been reported. This study compares morphology and cytochrome c oxidase (COI) genes between farmed and wild stock Rasbora spp. in Java and Sumatra island, Indonesia. We analyzed the truss network measurement (TNM) characters of 80 fish using discriminant function analysis statistical tests. DNA was extracted from muscle tissue of 24 fish specimens, which was then followed by polymerase chain reaction, sequencing, phylogenetic analysis, fixation index analysis, and statistical analysis of haplotype networks. Basic Local Alignment Search Tool analysis validated the following species: R. lateristriata and R. argyrotaenia from farming (Jogjakarta); Rasbora agryotaenia (Purworejo), R. lateristriata (Purworejo and Malang), Rasbora dusonensis (Palembang), and Rasbora einthovenii (Riau) from natural resources. Based on TNM characters, Rasbora spp. were divided into four groups, referring to four distinct characters in the middle of the body. The phylogenetic tree is divided into five clades. The genetic distance between R. argyrotaenia (Jogjakarta) and R. lateristriata (Malang) populations (0.66) was significantly different (p < 0.05). R. lateristriata (Purworejo) has the highest nucleotide diversity (0.43). R. argyrotaenia from Jogjakarta and Purworejo shared the same haplotype. The pattern of gene flow among them results from the two populations' close geographic proximity and environmental effects. R. argyrotaenia had low genetic diversity, therefore, increasing heterozygosity in cultivated populations is necessary to avoid inbreeding. Otherwise, R. lateristriata (Purworejo) had a greater gene variety that could be used to develop breeding. In conclusion, the middle body parts are a distinguishing morphometric character of Rasbora spp., and the COI gene is more heterozygous in the wild population than in farmed fish, therefore, enrichment of genetic variation is required for sustainable Rasbora fish farming.

Morphometric and Genetic Variability Among Tylenchulus semipenetrans Populations from Citrus Growing Area in Korea

  • Park, Byeong-Yong;Park, Sun-Nam;Lee, Jae-Kook;Bae, Chang-Hwan
    • The Plant Pathology Journal
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    • v.25 no.3
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    • pp.236-240
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    • 2009
  • Tylenchulus semipenetrans, citrus nematode is an important phytopathogenic nematode and responsible for serious damage on citrus. However, little information is available about genetic variability of T. semipenetrans among different populations with variation of conventional diagnostic characteristics. In this study, we compared the morphometric and genetic characteristics among different populations. The mature female of T. semipenetrans collected in this study had thicker cuticle than those in the previous studies. In comparative sequence analysis of T. semipenetrans populations obtained from Jeju in Korea, we observed genetic variations within clones generated from single individuals. To determine whether variability among copies of nuclear ribosomal DNA sequences exists in the genome of T. semipenetrans, PCR-RFLP technique from individuals of Korean isolates with MseI and MspI restriction enzymes was used to prove experimentally that all populations have intra-specific variations. Restriction enzyme digestion created several fragments on 3.0% agarose gel corresponding to several haplotypes in all populations, though some populations displayed fragment deletion. The total length of fragments was larger than before digestion, indicating sequence heterogeneity within the genome of T. semipenetrans.

Hydraulic and Morphometric Characteristics of the Channel Bends (유로 만곡부의 수리 및 계량형태학적 특성)

  • Song, Jai Woo
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.12 no.3
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    • pp.173-180
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    • 1992
  • A feature typical of natural rivers is the bend. The purpose of this study is to examine hydraulic and morphometric characteristics in channel bend reach by the deterministic approach. Cross section shape factor, "As" is suggested for a new cahracteristic factor of channel bend reach analysis. The variation of this new factor along the river reach showed the location of the concentration of the force due to the current all over the reach, that is curved or not. Some general meander factors are used for correlation with new factor suggested, and the applicability of "As" is verified. The range R/W values are concentrated 2~4, the meanning of this value can be regarded to the warning for bank erosion or breaking. And this paper dealt with prediction of cross section bed shape variation.

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Morphometrical Analysis of Developing Renal Tubular and Glomerular Cells in Rabbit (토끼의 발생기 뇨세관과 사구체 세포들의 형태계측학적인 분석)

  • 정호중;양영철;배기원
    • Journal of Life Science
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    • v.8 no.4
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    • pp.449-456
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    • 1998
  • Using morphometric technique, the present study was made of the kidney of rabbit embryo in the 13 days of the gestation. Their section areas of the renal tubules and the glomerular cells were compared with the those of adult rabbit, 1. In the developing renal tubule, the tubular section areas were larger than that of the adult, but the nuclear section areas of tubular calls were smaller than the adult. The microvilli of their cell surface were poorly developed, and their cytoplasm contained well developed mitochondria with euchromatic nucleus. 2. In the developing glomeruli. the nuclear section area of the cells of the parietal layer, the podocytes, and the endothelial cells were similar size, but their nuclei were larger than those of the adult. The cytopalsm of the podocytes contained well-developed rough endoplasmic reticulum, Golgi apparatus, and round mitochondria.

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Morphological analysis of Tripylina stramenti(Nematoda: Enoplida: Trischistomatidae) firstly recorded in Korea

  • Kim, Taeho;Park, Joong-Ki;Kim, Jiyeon
    • Journal of Species Research
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    • v.11 no.2
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    • pp.98-101
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    • 2022
  • The genus Tripylina Brzeski, 1963 is a group of terrestrial nematodes that inhabit soil and semi-wet biomes, most of which have been reported from Europe, Asia, America, Africa, and New Zealand. Tripylina stramenti (Yeates, 1971) Tsalolikhin, 1983, belonging to the family Trischistomatidae Andrassy, 2007, is newly discovered from Korea. The specimens were collected from the edge of the valley of Ulleung-gun, Gyeongsangbuk-do, South Korea. Tripylina stramenti described herein shows typical morphological characters of the genus Tripylina, including six and four setae in a single whorl, present dorsal tooth and subventral teeth, prodelphic reproductive system of female, absence post-uterine sac, narrow sickle-shaped spicule of male and generally S-shaped tail. The specimens differ in their body width (from the New Zealand populations), outer labial setae length, cuticles thickness(from the West African populations), and nerve ring position (from Indian populations). This species is distinguished from other Tripylina species by its relatively large body, two anterior and subventral teeth, and single cervical seta. In this study, morphological characteristics and morphometric information of the Korean T. stramenti isolate are described, illustrated, and compared with the same species from other geographic origins.

MORPHOMETRIC ANALYSIS OF PLECOGLOSSUS ALTIVELIS OF CHEJU ISLAND AND THE NAKDONG RIVER (제주도 및 낙동강산 은어군의 형태 측정학적 분석)

  • Kim Eul-Bae
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.3 no.4
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    • pp.228-232
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    • 1970
  • From the standpoint of fishery science it is an interesting matter to note that the size of Plecoglessus altivelis population on Cheju Island is smaller than that of the Nakdong River located in the southern part of Korea's mainland. Therefore the author carried out a comparative analysis to determine whether the populations differ because of racial or because of environmental conditions. The morphometric characters of the head length and the body length were used for the analysis of covariance and computed by a standard regression method of testing for the homogeneity of the populations. All samples were collected during 1968 and 1969 in the Milyang Stream of the Nakdong River and the Cheonji Stream of Cheju Island. The results of the analysis of the populations based on the significance test are as follows: 1. Since the F value observed was only 1.023 ($n_1=1,\;n_2=42$) the conclusion was reached that the samples could both belong to the same population. 2. In comparison with the deviations of the regression coefficients between the fish of the Nakdong River and Cherinji Stream, the populations were also highly significant suggesting that thelr belong to the same population. 3. The conclusion is that the fish of Cheju Island became a smaller fish in size due to an environmental condition but not due to racial characteristics.

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EFFECTS OF HYDROXYAPATITE AND TITANIUM-COATED DENTAL IMPLANTS ON BONE FORMATION AND MATURATION IN DOG (성견에서 수산화인산염 피개 IMZ임플란트와 티타늄 피개 IMZ임플란트주위의 골형성 및 골성숙 정도에 대한 비교연구)

  • Yoon, Hong-Cheol;Han, Dong-Hoo
    • The Journal of Korean Academy of Prosthodontics
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    • v.33 no.2
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    • pp.317-334
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    • 1995
  • The purpose of this study was to compare the bone formation, maturation around HA-and titaniumcoated dental implants in dog. 5 hydroxyapatite coated IMZ implants and 5 titanium coated IMZ implants were placed into the previously extracted site in the mandible of 5 adults dogs. All dogs were injected intravenously Tetracycline, Alizalin red S, and Calcein for bone fluorescent labelling, After the experimental period of 16weeks, the dogs were sacrificed and tissue samples around the implants were obtained. Microscopic observations(ligth, polariged and fluorescence microscope), morphometric analysis, line profile with EPMA, and quantitative analysis for Ca,P, and Ti were performed. The results were as follows ; 1. Bone maturations around the implants were relatively lower than those of natural teeth. No significant differences in bone maturation and remodeling patterns were observed between the two implants groups. 2. Calcification of bone surrounding the implants was initiated in 8-11 weeks for HA-coated implants, while it took 11 weeks or more for Ti-coated implants. 3. Bone-to-implants contact ratio of 82.63% was recorded for HA-coated group and 72.25% for titanium coated group, with no significant difference between the two groups. 4. Bone around the implants exhibited reduced quantity of Ca and P in the $100{\mu}m$ region relative to natural teeth, while the rest of the regions showed no statistical differences. No significant differences were found between the two implant groups. 5. There was a separation of HA layer from the implant core and subsequent infiltration of inflammatory cells into the resulting space in the HA-coated implants, and evidences of phagocytosis of HA particles by macrophages. Bone calcification was more rapid around HA-coated implants compared to titanium-coated implants, but HA coated implants did not show any significant differences either in the degree of calcification or the bone-to-implant contact ratio over Ti coated implants. HA coated implants may have complications associated with HA absorption and separation of HA layer from the implant core.

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Principal Component Analysis and Molecular Characterization of Reniform Nematode Populations in Alabama

  • Nyaku, Seloame T.;Kantety, Ramesh V.;Cebert, Ernst;Lawrence, Kathy S.;Honger, Joseph O.;Sharma, Govind C.
    • The Plant Pathology Journal
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    • v.32 no.2
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    • pp.123-135
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    • 2016
  • U.S. cotton production is suffering from the yield loss caused by the reniform nematode (RN), Rotylenchulus reniformis. Management of this devastating pest is of utmost importance because, no upland cotton cultivar exhibits adequate resistance to RN. Nine populations of RN from distinct regions in Alabama and one population from Mississippi were studied and thirteen morphometric features were measured on 20 male and 20 female nematodes from each population. Highly correlated variables (positive) in female and male RN morphometric parameters were observed for body length (L) and distance of vulva from the lip region (V) (r = 0.7) and tail length (TL) and c' (r = 0.8), respectively. The first and second principal components for the female and male populations showed distinct clustering into three groups. These results show pattern of sub-groups within the RN populations in Alabama. A one-way ANOVA on female and male RN populations showed significant differences ($p{\leq}0.05$) among the variables. Multiple sequence alignment (MSA) of 18S rRNA sequences (421) showed lengths of 653 bp. Sites within the aligned sequences were conserved (53%), parsimony-informative (17%), singletons (28%), and indels (2%), respectively. Neighbor-Joining analysis showed intra and inter-nematodal variations within the populations as clone sequences from different nematodes irrespective of the sex of nematode isolate clustered together. Morphologically, the three groups (I, II and III) could not be distinctly associated with the molecular data from the 18S rRNA sequences. The three groups may be identified as being non-geographically contiguous.

Biochemical Variation and Systematic Status of the Genus Agkistrodon (Crotalidae) in Korea (韓國産 살모사 屬에 關한 遺傳的 變異 및 系流學的 硏究)

  • Paik, Nam-Keuk;Kim, Yung-Jin;Yang, Suh-Yung
    • The Korean Journal of Zoology
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    • v.22 no.4
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    • pp.153-164
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    • 1979
  • A total of 352 specimens of congeneric species of Agkistrodon was collected and morphometric analysis and starch-gel electrophoresis were carried out in order to investigate the taxonomic status of this genus. The results obtained in this study are as follows: Morphometric analysis 1. Three species are recognized based on Gloyd's criteria. There was no specimen that was doubtful to classify correctly. Therefore, it seems that Gloyd's morphological characters are good criteria to identify each species. 2. All three species are sympatric at two localities (Mt. Seolag, Gangwon-do, and Mt. Deogyu, Jeonra-bugdo) and A. caligino년 and A. b. brevicaudus are sympatric at Gwangneung and Mt. Yongmun, Gyonggi-do. No hybrids were found in these sympatric localities. 3. Notable sexual dimorphism was found in meristic characters. 4. A. saxatilis has signicantly more number of ventrals and shorter tail ratio than other two species. 5. There were no significant meristic character differences between A. caligino년 and A. b. brevicaudus. Genetic analysis 1. Among 26 loci investigated, 12 loci (46.1%) were identical in their mobility, 4 loci (15.4%) were nearly identical with minor frequency differences, and 10 loci (38.5%) showed interspecific mobility difference. 2. The average proportion of polymorphic loci was 9.03%. This is considerably less than that of other vertebrates. 3. The average S and D values between species are .695 and .342 respectively. These values indicate that three taxa are distinct species. 4. A. caliginosus is genetically more related to A. saxatilis than to Agkistrodon, namely A. b. brevicaudus, A. caligino년 and A. saxatilis, as proposed by Gloyd. Far from being mere morphological variants, as suggested by Kang and Yoon (1975), they are highly distinctive evolutionary units.

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A Morphometric Analysis of Neuroforamen in Grade I Isthmic Spondylolisthesis by Anterior Lumbar Interbody Fusion with Pedicle Screw Fixation

  • Lee, Dong-Yeob;Lee, Sang-Ho;Kim, Seok-Kang;Maeng, Dae-Hyeon;Jang, Jee-Soo
    • Journal of Korean Neurosurgical Society
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    • v.41 no.6
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    • pp.377-381
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    • 2007
  • Objective : The aim of this study was to evaluate the morphometric changes in neuroforamen in grade I isthmic spondylolisthesis by anterior lumbar interbody fusion [ALIF]. Methods : Fourteen patients with grade I isthmic spondylolisthesis who underwent single level ALIF with percutaneous pedicle screw fixation were enrolled. All patients underwent standing lateral radiography and magnetic resonance imaging [MRI] before surgery and at 1 week after surgery. For quantitative analysis, the foraminal height, width, epidural foraminal height, epidural foraminal width, and epidural foraminal area were evaluated at the mid-portion of 28 foramens using T2-weighted sagittal MRI. For qualitative analysis, degree of neural compression in mid-portion of 28 foramens was classified into 4 grades using T2-weighted sagittal MRI. Clinical outcomes were assessed using Visual Analogue Sale [VAS] scores for leg pain and Oswestry disability index before surgery and at 1 year after surgery. Results : The affected levels were L4-5 in 10 cases and L5-S1 in 4. The mean foraminal height was increased [p<0.001], and the mean foraminal width was decreased [p=0.014] significantly after surgery. The mean epidural foraminal height [p<0.001], epidural foraminal width [p<0.001], and epidural foraminal area [p<0.001] showed a significant increase after surgery. The mean grade for neural compression was decreased significantly after surgery [p<0.001]. VAS scores for leg pain [p=0.001] and Oswestry disability index [p=0.001] was decreased significantly at one year after surgery. Conclusion : Foraminal stenosis in grade I isthmic spondylolisthesis may effectively decompressed by ALIF with percutaneous pedicle screw fixation.