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Theoretical Study on Hydrophobicity of Amino Acids by the Solvation Free Energy Density Model

  • Kim, Jun-Hyoung;Nam, Ky-Youb;Cho, Kwang-Hwi;Choi, Seung-Hoon;Noh, Jae-Sung;No, Kyoung-Tai
    • Bulletin of the Korean Chemical Society
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    • 제24권12호
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    • pp.1742-1750
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    • 2003
  • In order to characterize the hydrophobic parameters of N-acetyl amino acid amides in 1-octanol/water, a theoretical calculation was carried out using a solvation free energy density model. The hydrophobicity parameters of the molecules are obtained with the consideration of the solvation free energy over the solvent volume surrounding the solute, using a grid model. Our method can account for the solvent accessible surface area of the molecules according to conformational variations. Through a comparison of the hydrophobicity of our calculation and that of other experimental/theoretical works, the solvation free energy density model is proven to be a useful tool for the evaluation of the hydrophobicity of amino acids and peptides. In order to evaluate the solvation free energy density model as a method of calculating the activity of drugs using the hydrophobicity of its building blocks, the contracture of Bradykinin potentiating pentapeptide was also predicted from the hydrophobicity of each residue. The solvation free energy density model can be used to employ descriptors for the prediction of peptide activities in drug discovery, as well as to calculate the hydrophobicity of amino acids.

비정형 콘크리트 패널의 수학적 알고리즘을 이용한 생산-설치 데이터 생성모델 기초연구 (A Basic Study on Data Estimation Model of Production-installation Using Mathematical Algorithm in Free-Form Concrete Panel)

  • 손승현;김선국
    • 한국건축시공학회:학술대회논문집
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    • 한국건축시공학회 2016년도 춘계 학술논문 발표대회
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    • pp.166-167
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    • 2016
  • Unlike the past, supported by the development of digital technologies, free-form buildings are frequently designed with creative thoughts of architectural designers. However, there are some difficulties preventing successfully completion of projects, like reduced productivity and increased construction duration and cost upon the process of producing and installing concrete panels for free-form structures. In particular, there are active studies on the CNC machine for production of free-form concrete panels. Yet, it is difficult to effectively and easily come up with information on production and installation of free-form, curve-surfaced panels which are difficult to be mathematically defined. This requires a lot of manpower and time to implement the curved surfaces of free-form buildings as intended by architects. Accordingly, it needs a model that can effectively create production-installation data of free-form concrete panels for successful free-form building projects. Thus, the purpose of the study is to suggest data estimation model of production-installation using mathematical algorithm in free-form concrete panels. The study results will realize effective production and installation of free-form concrete members, allowing improved productivity of projects, reduced cost and shortened construction duration.

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Numerical study on the hydrodynamic characteristics of a propeller operating beneath a free surface

  • Paik, Kwang-Jun
    • International Journal of Naval Architecture and Ocean Engineering
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    • 제9권6호
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    • pp.655-667
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    • 2017
  • The results of a numerical study on the performance of a propeller operating near a free surface are presented. The numerical simulations were performed for the various advance coefficients and the submergence depths of the model propeller. The effects of the model propeller size were investigated using two different model propeller sizes for all cases. The wave pattern of the free surface and the flow structure around the propeller as well as the hydrodynamic characteristics of the propeller were investigated through simulation results. The thrust and torque fluctuated and the trajectory of the tip vortex was distorted due to the interaction with the free surface. The wave pattern of the free surface was related to the tip vortex of the propeller. The decreases in thrust and torque at the small model propeller were greater than those of the large model propeller. The reduction rate of the thrust and torque increased with the advance coefficient.

Theoretical Results for a Dipole Plasmonic Mode Based on a Forced Damped Harmonic Oscillator Model

  • Tongtong Hao;Quanshui Li
    • Current Optics and Photonics
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    • 제7권4호
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    • pp.449-456
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    • 2023
  • The localized surface-plasmon resonance has drawn great attention, due to its unique optical properties. In this work a general theoretical description of the dipole mode is proposed, using the forced damped harmonic oscillator model of free charges in an ellipsoid. The restoring force and driving force are derived in the quasistatic approximation under general conditions. In this model, metal is regarded as composed of free charges and bound charges. The bound charges form the dielectric background which has a dielectric function. Those free charges undergo a collective motion in the dielectric background under the driving force. The response of free charges will not be included in the dielectric function like the Drude model. The extinction and scattering cross sections as well as the damping coefficient from our model are verified to be consistent with those based on the Drude model. We introduce size effects and modify the restoring and driving forces by adding the dynamic depolarization factor and the radiation damping term to the depolarization factor. This model provides an intuitive physical picture as well as a simple theoretical description of the dipole mode of the localized surface-plasmon resonance based on free-charge collective motion.

SCM 기법에 의한 비정형 콘크리트 패널의 공급관리 모델 기초연구 (Basic Study of Distribution Management Model of the Free-Form Concrete Panels)

  • 조원현;나영주;김선국
    • 한국건축시공학회:학술대회논문집
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    • 한국건축시공학회 2016년도 춘계 학술논문 발표대회
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    • pp.115-116
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    • 2016
  • Numerous of free-form buildings come up with external appearances using various types of free-form panels. If the panel types produced, transport and installation order and maintenance history are not properly managed, it is difficult to complete a given project successfully. For free-form building projects that satisfy 5 factors (proper time, place, price, product and quantity), a supply chain management technique is applied for distribution management of free-form concrete panels. In addition, the study listed the whole production process of free-form concrete panels and any necessary information, and suggested a basic model for the management. The study result will be a great help in effective distribution management of free-form panels for free-form building projects.

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Computational Prediction of Solvation Free Energies of Amino Acids with Genetic Algorithm

  • Park, Jung-Hum;Lee, Jin-Won;Park, Hwang-Seo
    • Bulletin of the Korean Chemical Society
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    • 제31권5호
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    • pp.1247-1251
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    • 2010
  • We propose an improved solvent contact model to estimate the solvation free energies of amino acids from individual atomic contributions. The modification of the solvation model involves the optimization of three kinds of parameters in the solvation free energy function: atomic fragmental volume, maximum atomic occupancy, and atomic solvation parameters. All of these atomic parameters for 17 atom types are developed by the operation of a standard genetic algorithm in such a way to minimize the difference between experimental and calculated solvation free energies. The present solvation model is able to predict the experimental solvation free energies of amino acids with the squared correlation coefficients of 0.94 and 0.93 for the parameterization with Gaussian and screened Coulomb potential as the envelope functions, respectively. This result indicates that the improved solvent contact model with the newly developed atomic parameters would be a useful tool for the estimation of the molecular solvation free energy of a protein in aqueous solution.

전기분해에 의한 잔류염소 생성 예측 모델 개발 (Model development for chlorine generation using electrolysis)

  • 손진식;이선재;신초롱
    • 상하수도학회지
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    • 제23권3호
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    • pp.331-337
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    • 2009
  • Electrolysis produces hypochlorous acid by using a small quantity of NaCl as electrolyte. This process maximizes the stabilization of drinking water through the control of chlorine residual concentration. This study investigated free chlorine generation by an electrolytic method using $Ti/IrO_2$ and stainless steel. The generation of free chlorine was increased with increasing hydraulic retention time, voltage, chlorine ion concentration and the number of electrodes. However, the change of pH did not affect the generation of free chlorine. There was no significant difference on the behavior of chlorine concentration between electrolytic method and NaOCl injection. In this study, the concentration of free chlorine predicted model based on power functional model was developed various under conditions. Electrolysis free chlorine generation model can be effective tool in the estimation of free chlorine generation.

Simulation of Turbulent Flow and Surface Wave Fields around Series 60 $C_B$=0.6 Ship Model

  • Kim, Hyoung-Tae;Kim, Jung-Joong
    • Journal of Ship and Ocean Technology
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    • 제5권1호
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    • pp.38-54
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    • 2001
  • A finite difference method for calculating turbulent flow and surface wave fields around a ship model is evaluated through the comparison with the experimental data of a Series 60 $C_B$=0.6 ship model. The method solves the Reynolds-averaged Navior-Stokes Equations using the non-staggered grid system, the four-stage Runge-Kutta scheme for the temporal integration of governing equations and the Bladwin-Lomax model for the turbulence closure. The free surface waves are captured by solving the equation of the kinematic free-surface condition using the Lax-Wendroff scheme and free-surface conforming grids are generated at each time step so that one of the grid surfaces coincides always with the free surface. The computational results show an overall close agreement with the experimental data and verify that the present method can simulate well the turbulent boundary layers and wakes as well as the free-surface waves.

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Development of a new free wake model using finite vortex element for a horizontal axis wind turbine

  • Shin, Hyungki;Park, Jiwoong;Lee, Soogab
    • International Journal of Aeronautical and Space Sciences
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    • 제18권1호
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    • pp.17-27
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    • 2017
  • The treatment of rotor wake has been a critical issue in the field of the rotor aerodynamics. This paper presents a new free wake model for the unsteady analysis for a wind turbine. A blade-wake-tower interaction is major source of unsteady aerodynamic loading and noise on the wind turbine. However, this interaction can not be considered in conventional free wake model. Thus, the free wake model named Finite Vortex Element (FVE hereafter) was devised in order to consider the interaction effects. In this new free wake model, the wake-tower interaction was described by dividing one vortex filament into two vortex filaments, when the vortex filament collided with a tower. Each divided vortex filaments were remodeled to make vortex ring and horseshoe vortex to satisfy Kelvin's circulation theorem and Helmholtz's vortex theorem. This model was then used to predict aerodynamic load and wake geometry for the horizontal axis wind turbine. The results of the FVE model were compared with those of the conventional free wake model and the experimental results of SNU wind tunnel test and NREL wind tunnel test under various inflow velocity and yaw condition. The result of the FVE model showed better correlation with experimental data. It was certain that the tower interaction has a strong effect on the unsteady aerodynamic load of blades. Thus, the tower interaction needs to be taken into account for the unsteady load prediction. As a result, this research shows a potential of the FVE for an efficient and versatile numerical tool for unsteady loading analysis of a wind turbine.

경제학 관점에서 부분유료화 게임 비즈니스 모델 분석 및 사례 연구 (The Boundary Conditions of Free-to-Play Business Model in the Economic Perspective: a case study)

  • 유창석;정재기;이좌지자
    • 한국콘텐츠학회논문지
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    • 제14권11호
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    • pp.883-892
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    • 2014
  • 게임에 있어서 부분유료화 사업 모형은 한국에서 처음 상용화가 되어서 이제는 가장 보편적인 사업 모형이 되었으나, 이에 대한 이론적인 내용에 대해서는 잘 알려지지 않았다. 이에 따라 현장에서는 그동안 부분유료화 모형 설계에 있어서 시행착오나 영감에 기초하여 진행해 왔다. 본 연구에서는 경제학의 가격차별화 이론을 바탕으로 부분유료화 사업 모형을 설명하고, 이를 통해 시장지배력, 고객 구분 역량, 그리고 고객간 거래 금지라는 부분유료화 사업 모형의 세가지 핵심조건을 이론적으로 도출하였다. 그리고, 사례 분석을 통해 본 연구에서 제안한 핵심조건이 만족되지 못하였을 경우 어떻게 부분유료화 사업모형이 붕괴되는지에 대해 살펴보고 이를 통해 부분유료화 사업모형 기획의 이론적 배경을 제시하고자 한다.