• Title/Summary/Keyword: model viruses

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Selection of model viruses for foot-and-mouth disease virus-related-experiments (구제역 바이러스를 대체할 모델 바이러스 선별)

  • Kim, Tae-Hwan;Herath, Thilina U. B.;Kim, Jae-Hoon;Lee, Kwang-Nyeong;Park, Jong-Hyeon;Kim, Chul-Joong;Lee, Jong-Soo
    • Korean Journal of Microbiology
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    • v.53 no.4
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    • pp.304-308
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    • 2017
  • Researchers have comparatively fewer opportunities to conduct experiments on foot-and-mouth disease virus (FMDV), owing to the limited availability of biosafety level 3 facilities. Bovine rhinovirus (BRV) and human rhinovirus (HRV), which are genetically closely related to FMDV, have been evaluated in this study as model viruses for FMDV. To discover whether BRV and HRV have similar physicochemical properties as FMDV, virus susceptibility tests have been performed in different physical (pH and heat) and chemical (acidic/alkaline solutions and commercial disinfectants) conditions in vitro. Our data revealed that the physicochemical characteristics of BRV and HRV were nearly similar to those of FMDV.

Improvement of Virus Safety of a Human Intravenous Immunoglobulin by Low pH Incubation

  • Kim, In-Seop;Choi, Yong-Woon;Lee, Sung-Rae;Cho, Hang-Bok;Eo, Ho-Gueon;Han, Sang-Woo;Chang, Chong-Eun;Lee, Soung-Min
    • Journal of Microbiology and Biotechnology
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    • v.11 no.4
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    • pp.619-627
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    • 2001
  • n order to increase the virus safety of a human intravenous immunoglobulin (IVIg) that was manufactured by a successive process of cold ethanol fractionation, polyethylene glycol precipitation, and pasteurization ($60^{\circ}C$ heat treatment for 10h), a low pH incubation process (pH 3.9 at $25{\circ}C$ for 14 days) was employed as the final step. The efficacy and mechanism of the fraction III cold ethanol fractionation, pasteurization, and low pH treatment steps in the removal and/or inactivation of blood-borne viruses were closely examined. A variety of experimental model viruses for human pathogenic viruses, including the Bovine herpes virus (BHV), Bovine viral diarrhoea virus (BVDV), Murine encephalomyocarditis virus (EMCV), and Porcine parvovirus (PPV), were selected for this study. The mechanism of reduction for the enveloped viruses (BHV and BVDV) during fraction III fractionation was both inactivation and partitioning, however, it was partitioning in the case of the nonenveloped viruses (EMCV and PPV). The log reduction factors achieved during fraction III fractionation were ${\geqq}$6.7 for BHV, ${\geqq}4.7$ for BVDV, 4.5 for EMCV, and 4.4 for PPV. Pasteurization was found to be a robust and effective step in inactivating all the viruses tested. The log reduction factors achieved during the pasteurization process were ${\geqq}7.5$ for BHV, ${\geqq}4.8$ for BVDV, 3.0 for EMCV, and 3.3 for PPV. A low pH incubation was very effective in inactivating the enveloped viruses as well as EMCV. The log reduction factors achieved during low pH incubation were ${\geqq}7.4$ for BHV, ${\geqq}3.9$ for BVDV, 5.2 for EMCV, and 2.0 for PPV. These results indicate that the low pH treatment successfully improved the viral safety of the final products.

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ESP model for predictions Trojan (Trojan 예측을 위한 ESP 모델 구현)

  • Kim, JongMin;Kim, MinSu;Kim, Kuinam J.
    • Convergence Security Journal
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    • v.14 no.5
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    • pp.37-47
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    • 2014
  • A Trojan malicious code is one of largest malicious codes and has been known as a virus that causes damage to a system as itself. However, it has been changed as a type that picks user information out stealthily through a backdoor method, and worms or viruses, which represent a characteristic of the Trojan malicious code, have recently been increased. Although several modeling methods for analyzing the diffusion characteristics of worms have proposed, it allows a macroscopic analysis only and shows limitations in estimating specific viruses and malicious codes. Thus, in this study an ESP model that can estimate future occurrences of Trojan malicious codes using the previous Trojan data is proposed. It is verified that the estimated value obtained using the proposed model is similar to the existing actual frequency in causes of the comparison between the obtained value and the result obtained by the Markov chain.

Quantitative Analysis of Feline Calicivirus Inactivation using Real-time RT-PCR (Real-time RT-PCR을 이용한 Feline Calicivirus 불활성화의 정량적 분석)

  • Jeong, Hye Mi;Kim, Kwang Yup
    • Journal of Food Hygiene and Safety
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    • v.29 no.1
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    • pp.31-39
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    • 2014
  • Norovirus causes acute gastroenteritis in all age groups and its food poisoning outbreaks are rapidly increasing in Korea. Reverse transcription-polymerase chain reaction (RT-PCR) is most widely used for the rapid detection of foodborne viruses due to high sensitivity. However, the false positive results of RT-PCR obtained against already inactivated viruses could be a serious drawbacks in food safety area. In this study, we investigated a method to yield true positive RT-PCR results only with alive viruses. To decompose the RNA genes from dead viruses, the enzymatic treatments composed of proteinse K and Ribonuclease A were applied to the sanitized and inactivated virus particles. Another aim of this study was to quantify the efficiencies of several major sanitizing treatments using real-time RT-PCR. Feline calicivirus (FCV) that belongs to the same Caliciviridae family with norovirus was used as a surrogate model for norovirus. The initial level of virus in control suspension was approximately $10^4$ PFU/mL. Most of inactivated viruses treated with the enzymatic treatment for 30 min at $37^{\circ}C$ were not detected in RT-PCR, Quantification results to verify the inactivation efficiencies of sanitizing treatments using real-time RT-PCR showed no false positive in most cases. We could successfully develope a numerical quantification process for the inactivated viruses after major sanitizing treatments using real-time RT-PCR. The results obtained in this study could provide a novel basis of rapid virus quantification in food safety area.

Analysis on Operation of Anti-Virus Systems with Real-Time Scan and Batch Scan (실시간스캔과 배치스캔을 갖춘 안티바이러스시스템의 운영 분석)

  • Yang, Won Seok;Kim, Tae-Sung
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.38B no.11
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    • pp.861-869
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    • 2013
  • We consider an information system where viruses arrive according to a Poisson process with rate ${\lambda}$. The information system has two types of anti-virus operation policies including 'real-time scan' and 'batch scan.' In the real-time scan policy, a virus is assumed to be scanned immediately after its arrival. Consequently, the real-time scan policy assumes infinite number of anti-viruses. We assume that the time for scanning and curing a virus follows a general distribution. In the batch scan policy, a system manager operates an anti-virus every deterministic time interval and scan and cure all the viruses remaining in the system simultaneously. In this paper we suggest a probability model for the operation of anti-virus software. We derive a condition under which the operating policy is achieved. Some numerical examples with various cost structure are given to illustrate the results.

GENERALIZED $BARTOSZY\'{N}SKI'S$ VIRUS MODEL

  • Kim, Yong-Dai
    • Journal of the Korean Statistical Society
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    • v.35 no.4
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    • pp.397-407
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    • 2006
  • A new stochastic process is introduced for describing a mechanism of viruses. The process generalizes the $Bartoszy\'{n}ski's$ process ($Bartoszy\'{n}ski$, 1975a, 1975b, 1976) by allowing the stochastic perturbation between consecutive jumps to take into account the persistent infection (the infection without breaking infected cells). It is shown that the new process can be obtained by a weak limit of a sequence of Markov branching processes. Along with the construction of the new process, we study how the stochastic perturbation influences the risk of a symptom in an infected host. For this purpose, the quantal response model and the threshold model are investigated and compared through their induced survival functions.

Analysis of Calculation Model for Specific Air-water Interface Area in Unsaturated Porous Media (불포화 다공성 매질체의 공기-물 경계면 비표면적 계산모델 분석)

  • Kim, Min-Kyu;Kim, Song-Bae;Park, Seong-Jik
    • Journal of The Korean Society of Agricultural Engineers
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    • v.48 no.5
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    • pp.83-93
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    • 2006
  • In unsaturated porous media, the air-water interface (AWI) plays an important role in removing of biocolloids such as bacteria, viruses, and protozoan (oo)cysts. In this study, four models related to calculation of specific AWI area are analyzed to determine the appropriate model, and the selected models are verified using the previously reported experimental data. The results indicate that the modified model from Niemet et al. (2002) is the most appropriate tool for calculating the specific AWI area using the van Genuchten (1980) parameters obtained from the water retention curve. Hence, it is expected that this model could be used to quantitatively determine the attachment of biocolloids to AWI in the transport modeling of biocolloids in unsaturated porous media.

STABILITY OF DELAY-DISTRIBUTED HIV INFECTION MODELS WITH MULTIPLE VIRAL PRODUCER CELLS

  • ELAIW, A.M.;ELNAHARY, E.KH.;SHEHATA, A.M.;ABUL-EZ, M.
    • Journal of the Korean Society for Industrial and Applied Mathematics
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    • v.22 no.1
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    • pp.29-62
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    • 2018
  • We investigate a class of HIV infection models with two kinds of target cells: $CD4^+$ T cells and macrophages. We incorporate three distributed time delays into the models. Moreover, we consider the effect of humoral immunity on the dynamical behavior of the HIV. The viruses are produced from four types of infected cells: short-lived infected $CD4^+$T cells, long-lived chronically infected $CD4^+$T cells, short-lived infected macrophages and long-lived chronically infected macrophages. The drug efficacy is assumed to be different for the two types of target cells. The HIV-target incidence rate is given by bilinear and saturation functional response while, for the third model, both HIV-target incidence rate and neutralization rate of viruses are given by nonlinear general functions. We show that the solutions of the proposed models are nonnegative and ultimately bounded. We derive two threshold parameters which fully determine the positivity and stability of the three steady states of the models. Using Lyapunov functionals, we established the global stability of the steady states of the models. The theoretical results are confirmed by numerical simulations.

Aerodynamic Approaches for Estimation of Waste Disease Spread in Pig Farm through Airborne Contaminants (양돈장의 소모성질병 확산 분석을 위한 현장 모니터링 및 공기유동학적 분석)

  • Seo, Il-Hwan;Lee, In-Bok;Moon, Oun-Kyung;Kwon, Kyeong-Seok
    • Journal of The Korean Society of Agricultural Engineers
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    • v.56 no.1
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    • pp.41-49
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    • 2014
  • Pig chronic wasting disease, including porcine reproductive and respiratory syndrome (PRRS) and postweaning multisystemic wasting syndrome (PMWS), have made a continuous economic damage in pig farms. Airborne spread of livestock viruses are an important spread factor which is difficult to analyze due to invisible airflow and limitation of measurement. The objective of this study is to analyze airborne disease spread between buildings in the experimental pig farm by means of field experiment and computational fluid dynamics (CFD). The field experiments were conducted to capture airborne virus using air sampler and teflon filter along multi points in the experimental pig farm. The samples were tested in terms of virus detection resulting in positive reaction for PRRS and PCV-2 viruses, which can be a firm evidence of airborne virus spread. The CFD simulation model was developed by considering complex topography, wind conditions, building arrangement, and ventilation systems and was used to analyze airborne virus spread according to different wind conditions. The CFD computed result showed a possibility of airborne virus spread via livestock aerosol from infected pig house to neighboring pig houses according to wind directions. The CFD simulation technique is expected to provide significant data for estimating and making a counterplan against airborne disease spread.

Estimation and Classification of COVID-19 through Climate Change: Focusing on Weather Data since 2018 (기후변화를 통한 코로나바이러스감염증-19 추정 및 분류: 2018년도 이후 기상데이터를 중심으로)

  • Kim, Youn-Su;Chang, In-Hong;Song, Kwang-Yoon
    • Journal of Integrative Natural Science
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    • v.14 no.2
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    • pp.41-49
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    • 2021
  • The causes of climate change are natural and artificial. Natural causes include changes in temperature and sunspot activities caused by changes in solar radiation due to large-scale volcanic activities, while artificial causes include increased greenhouse gas concentrations and land use changes. Studies have shown that excessive carbon use among artificial causes has accelerated global warming. Climate change is rapidly under way because of this. Due to climate change, the frequency and cycle of infectious disease viruses are greater and faster than before. Currently, the world is suffering greatly from coronavirus infection-19 (COVID-19). Korea is no exception. The first confirmed case occurred on January 20, 2020, and the number of infected people has steadily increased due to several waves since then, and many confirmed cases are occurring in 2021. In this study, we conduct a study on climate change before and after COVID-19 using weather data from Korea to determine whether climate change affects infectious disease viruses through logistic regression analysis. Based on this, we want to classify before and after COVID-19 through a logistic regression model to see how much classification rate we have. In addition, we compare monthly classification rates to see if there are seasonal classification differences.