• Title/Summary/Keyword: mitochondrial cytochrome c oxidase subunit 1

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Variation of nuclear and mitochondrial DNAs in Korean and Chinese isolates of Clonorchis sinensis

  • Lee, Soo-Ung;Huh, Sun
    • Parasites, Hosts and Diseases
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    • v.42 no.3
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    • pp.145-148
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    • 2004
  • We compared the DNA sequence difference of isolates of Clonorchis sinensis from one Korean (Kimhae) and two Chinese areas (Guangxi and Shenyang), The sequences of nuclear rDNA (18S, internal transcribed spacer 1 and 2: ITS1 and ITS2) and mitochondrial DNA (cytochrome c oxidase subunit 1: cox1) were compared. A very few intraspecific nucleotide substitution of the 18S, ITS1, ITS2 and cox1 was found among three isolates of C. sinensis and a few nucleotide insertion and deletion of ITS1 were detected. The 18S, ITS1, ITS2 and cox1 sequences were highly conserved among three isolates. These findings indicated that the Korean and two Chinese isolates are similar at the DNA sequence level.

New Report of Two Species of Genus Pentias (Crustacea: Malacostraca: Isopoda) from South Korea

  • Song, Ji-Hun;Min, Gi-Sik
    • Korean Journal of Environmental Biology
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    • v.33 no.2
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    • pp.177-181
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    • 2015
  • Two marine isopods, Pentias hayi Richardson, 1904 and P. thompsoni Collinge, 1916 were verified as unrecorded species in South Korea. The genus Pentias is reported for the first time in South Korea. These two isopods were collected from Heuksan-do Island and Ulleung-do Island from South Korea, respectively. We provide descriptions of the diagnostic characteristics, illustrations of two species and their partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) for molecular characteristics.

New Record of Three Isopod Species (Crustacea: Malacostraca: Isopoda) from South Korea

  • Song, Ji-Hun;Min, Gi-Sik
    • Korean Journal of Environmental Biology
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    • v.33 no.2
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    • pp.182-188
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    • 2015
  • Three marine isopods, Symmius yamaguchiensis Shimomura, 2008, Colanthura pigmentata Kensley, 1980 and Synidotea nipponensis Nunomura, 1985 are reported for the first time in South Korea. The family Chaetiliidae, and genera Symmius and Colanthura are new to South Korea. We provide descriptions of the diagnostic characteristics, illustrations of three species and their partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) for molecular characteristics.

A Taxonomic Study on Perinereis nuntia Species Group (Polychaeta: Nereididae) of Korea

  • Park, Tae-Seo;Kim, Won
    • Animal Systematics, Evolution and Diversity
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    • v.23 no.1
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    • pp.75-85
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    • 2007
  • A taxonomic study was carried out on the Perinereis nuntia species group of Korea by using morphological and molecular data (mitochondrial cytochrome c oxidase subunit I: mtCOI). Two species, P. mictodonta (Marenzeller, 1879) and P. wilsoni (Glasby and Hsieh, 2006), are recognized and redescribed. In this study, mtCOI gene showed a good resolution as molecular marker for species identification of the P. nuntia species group of Korea.

DNA Barcoding of the Marine Protected Species Parasesarma bidens (Decapoda: Sesarmidea) from the Korean Waters

  • Kim, So Yeon;Yi, Chang Ho;Kim, Ji Min;Choi, Woo Yong;Kim, Hyoung Seop;Kim, Min-Seop
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.2
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    • pp.159-163
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    • 2020
  • Parasesarma bidens(De Haan, 1835) has been designated as a marine protected species by the Act on conservation and management of marine ecosystems. This crab has been recorded only from Jeju-do and Geomun-do, Republic of Korea. In this study, we describe for the first time the mitochondrial cytochrome c oxidase subunit I(COI) sequences of P. bidens. The intra-specific genetic distance among the Korean populations and between the Korean and Chinese populations ranged from 0% to 0.9% and 1.9% to 2.7%, respectively. The inter-specific genetic distances among the four Parasesarma species ranged from 10.9% to 12.8%. The finding of this study will be helpful to better describe P. bidens using COI DNA barcodes and can be used as basic data for their restoration and conservation research.

Phylogenetic relationship of ribosomal ITS2 and mitochondrial COI among diploid and triploid Paragonimus westermani isolates

  • Park, Gab-Man;Im, Kyung-Il;Yong, Tai-Soon
    • Parasites, Hosts and Diseases
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    • v.41 no.1
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    • pp.47-55
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    • 2003
  • We compared patterns of intraspecific polymorphism of two markers with contrasting modes of evolution, nuclear ribosomal DNA (rDNA) and mitochondrial DNA (mtDNA), in the lung fluke, diploid and triploid Paragonimus westermani from three geographical regions of Korea. The genetic distances between three populations of Korean diploid and triploid P. westermani showed no significant difference in the nucleotide sequences of the mitochondrial cytochrome c oxidase subunit 1 (mtCOI) and ribosomaal second internal transcribed spacer (ITS2) genes. A highly resolved strict-consensus tree was obtained that illustrated phylogenetically useful information of the ITS2 and mtCOI sequences from diploid and triploid P. westermani.

Molecular Characterization of Taenia multiceps Isolates from Gansu Province, China by Sequencing of Mitochondrial Cytochrome C Oxidase Subunit 1

  • Li, Wen Hui;Jia, Wan Zhong;Qu, Zi Gang;Xie, Zhi Zhou;Luo, Jian Xun;Yin, Hong;Sun, Xiao Lin;Blaga, Radu;Fu, Bao Quan
    • Parasites, Hosts and Diseases
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    • v.51 no.2
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    • pp.197-201
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    • 2013
  • A total of 16 Taenia multiceps isolates collected from naturally infected sheep or goats in Gansu Province, China were characterized by sequences of mitochondrial cytochrome c oxidase subunit 1 (cox1) gene. The complete cox1 gene was amplified for individual T. multiceps isolates by PCR, ligated to pMD18T vector, and sequenced. Sequence analysis indicated that out of 16 T. multiceps isolates 10 unique cox1 gene sequences of 1,623 bp were obtained with sequence variation of 0.12-0.68%. The results showed that the cox1 gene sequences were highly conserved among the examined T. multiceps isolates. However, they were quite different from those of the other Taenia species. Phylogenetic analysis based on complete cox1 gene sequences revealed that T. multiceps isolates were composed of 3 genotypes and distinguished from the other Taenia species.

Effect of Ovariectomy and Genistein on Hepatic Mitochondrial Function (난소절제와 Genistein 투여가 간 미토콘드리아 기능에 미치는 영향)

  • Lee Young Min;Jung Myeong Ho;Lee Yeon Sook;Song Jihyun
    • Journal of Nutrition and Health
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    • v.37 no.9
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    • pp.786-793
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    • 2004
  • Women with menopause or rats with ovariectomy is associated with increased body weight, body fat and insulin resistance, which are components of metabolic syndrome. Increased prevalence of metabolic syndrome after menopause might be associated with mitochondrial dysfunction, since mitochondrial oxidative and phosphorylation activity is strongly correlated with insulin sensitivity. Although estradiol replacement prevents the metabolic syndrome, harmful effect of estradiol hampers the casual usage to prevent the metabolic syndrome. It has been reported that genistein has a mild estrogenic activity, decreases fat mass in mice and has an antidiabetic role in diabetic rats. Although insulin resistance is closely related to mitochondrial functions, there has not been yet any study in regard to the effect of dietary genistein on mitochondrial function in the insulin resistant female subjects induced by ovariectomy or similar situation. The present study investigated whether the supplementation of genistein in the high fat diet affected the mitochondrial function of high fat fed ovariectomized rats. Female Sprague Dawley rats (8 weeks old) were assigned to the following groups: sham-operated+ high fat diet (S, n=6); sham-operated + high fat diet with 0.1% genistein (S + G, n=7); ovariectomized + high fat diet (OVX, n=8); ovariectomized + high fat diet with 0.1% genistein (OVX+ G, n=8). Ovariectomy significantly increased body weight compared with S group. Genistein consumption in ovariectomized (OVX + G) rats decreased body weight gain compared with OVX rats. Liver weights were increased by ovariectomy. The hepatic mitochondrial protein density expressed as mg per g liver was lower in the OVX group than in the S group. However, OVX + G group showed the increased mitochondrial protein density similar to the level of S group. When mRNA levels of genes related to mitochondria such as peroxisome proliferator-activated receptor ${\gamma}$ coactivator 1 (PGC-1) and cytochrome c oxidase subunit III (COX III) were measured, there were decreases in the mRNA levels of PGC-1 and COX III in S + G, OVX and OVX + G group. The activity of cytochrome c oxidase was not different between groups. We could observe the decrease in succinate dehydrogenase (SDH) activity per g liver in OVX rats. Genistein supplement increased SDH activity. In conclusion, genistein supplementation to the OVX rats enhanced mitochondrial function by increasing mitochondrial protein density and SDH activity. The improvement in mitochondrial function by genistein can contribute to the improvement in metabolic syndrome.

First Record of Cleantioides planicauda (Crustacea: Isopoda: Holognathidae) from South Korea

  • Song, Ji-Hun;Kim, Min-Seop;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.30 no.1
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    • pp.26-32
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    • 2014
  • Cleantioides planicauda (Benedict, 1899) has previously been recorded in China and Japan. In the present study, to our knowledge, we report for the first time the occurrence of this species in South Korea. Here, we provide detailed descriptions and illustrations of the diagnostic characteristics of C. planicauda. Further, for the first time, we determined the partial sequence of mitochondrial cytochrome c oxidase subunit 1 (CO1) gene of C. planicauda for molecular characteristic. Additionally, we provide a key to the Korean species and distribution of the genus Cleantioides. As a result of this study, four species of the genus Cleantioides, including C. planicauda, have now been recorded in South Korea.

Genetic comparison between Spirometra erinacei and S. mansonoides using PCR-RFLP analysis (만손열두조충과 북미열두조충의 중합효소연쇄반응-마디길이여러꼴 분석법을 이용한 유전 형질 비교)

  • LEE, Soo-Ung;HUH, Sun;PHARES, C. Kirk
    • Parasites, Hosts and Diseases
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    • v.35 no.4
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    • pp.277-282
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    • 1997
  • The only observed morphological difference between Spirometra erinqsei and S. mcnsonoides is the uterine shape of the mature proglottid. Two species of worms are thought to be evolutionarily closely related. Biomolecular colnparison of the ho worms by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis was conducted to observe the genetic distance. The 285 rDNA, mitochondrial cytochrome c oxidase subunit I (mCOI), and ribosomal internal transcribed spacer 1 (ITSI) fragments were obtained from the worms by PCR. The PCR products were cleaved by 5 four-base pair restriction enzyme combinations (Msp I, Hae III, Alu I, Cfo I, Rsa I) , electrophoresed and analyzed with PAUP 3.1.1. The fragment Patterns or 285 rDNA and Lni demonstrated that two worms were in identical systematic tree with bootstrap number 94 and 100, respectively As for mCOI, bootstrap number was 74 in a different tree. Above results are indicative of recent common ancestry between S. etinocei and S. mansonoides.

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