• Title/Summary/Keyword: missing data imputation

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Application of Multiple Imputation Method in Analyzing Data with Missing Continuous Covariates

  • Ghasemizadeh Tamar, S.;Ganjali, M.
    • The Korean Journal of Applied Statistics
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    • v.21 no.4
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    • pp.659-664
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    • 2008
  • Missing continuous covariates are pervasive in the use of generalized linear models for medical data. Multiple imputation is the most common and easy-to-do method of dealing with missing covariate data. However, there are always serious warnings in using this method. There should be concern to make imputed values more proper. In this paper, proper imputation from posterior predictive distribution is developed for implementing with arbitrary priors. We use empirical distribution of the posterior for approximating the posterior predictive distribution, to sample from it. This method is preferable in comparison with a presented imputation method of us which uses a full model to impute missing values using available software. The proposed methods are implemented on glucocorticoid data.

Imputation of Missing Data Based on Hot Deck Method Using K-nn (K-nn을 이용한 Hot Deck 기반의 결측치 대체)

  • Kwon, Soonchang
    • Journal of Information Technology Services
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    • v.13 no.4
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    • pp.359-375
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    • 2014
  • Researchers cannot avoid missing data in collecting data, because some respondents arbitrarily or non-arbitrarily do not answer questions in studies and experiments. Missing data not only increase and distort standard deviations, but also impair the convenience of estimating parameters and the reliability of research results. Despite widespread use of hot deck, researchers have not been interested in it, since it handles missing data in ambiguous ways. Hot deck can be complemented using K-nn, a method of machine learning, which can organize donor groups closest to properties of missing data. Interested in the role of k-nn, this study was conducted to impute missing data based on the hot deck method using k-nn. After setting up imputation of missing data based on hot deck using k-nn as a study objective, deletion of listwise, mean, mode, linear regression, and svm imputation were compared and verified regarding nominal and ratio data types and then, data closest to original values were obtained reasonably. Simulations using different neighboring numbers and the distance measuring method were carried out and better performance of k-nn was accomplished. In this study, imputation of hot deck was re-discovered which has failed to attract the attention of researchers. As a result, this study shall be able to help select non-parametric methods which are less likely to be affected by the structure of missing data and its causes.

Large tests of independence in incomplete two-way contingency tables using fractional imputation

  • Kang, Shin-Soo;Larsen, Michael D.
    • Journal of the Korean Data and Information Science Society
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    • v.26 no.4
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    • pp.971-984
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    • 2015
  • Imputation procedures fill-in missing values, thereby enabling complete data analyses. Fully efficient fractional imputation (FEFI) and multiple imputation (MI) create multiple versions of the missing observations, thereby reflecting uncertainty about their true values. Methods have been described for hypothesis testing with multiple imputation. Fractional imputation assigns weights to the observed data to compensate for missing values. The focus of this article is the development of tests of independence using FEFI for partially classified two-way contingency tables. Wald and deviance tests of independence under FEFI are proposed. Simulations are used to compare type I error rates and Power. The partially observed marginal information is useful for estimating the joint distribution of cell probabilities, but it is not useful for testing association. FEFI compares favorably to other methods in simulations.

A New Method for Imputation of Missing Genotype using Linkage Disequilibrium and Haplotype Information (결측치가 존재하는 유전형 자료에서의 연관불균형과 일배체형을 사용한 결측치 대치 방법)

  • Park Yun-Ju;Kim Young-Jin;Park Jung-Sun;Kim Kuchan;Koh Insong;Jung Ho-Youl
    • Journal of KIISE:Software and Applications
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    • v.32 no.2
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    • pp.99-107
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    • 2005
  • In this paper, wc propose a now missing imputation method for minimizing loss of information linkage disequilibrium-based and haplotype-based imputation method, which estimate missing values of the data based on the specificity of Single Nucleotide Polymorphism(SNP) genotype data. Method for imputing data is needed to minimize the loss of information caused by experimental missing data. In general, missing imputation of biological data has used major allele imputation method. but this approach is not optima]. 1'his method has high error rates of missing values estimation since the characteristics of the genotype data are not considered not take into consideration the specific structure of the data. In this paper, we show the results of the comparative evaluation of our model methods and major imputation method for the estimation of missing values.

Comparing Accuracy of Imputation Methods for Incomplete Categorical Data

  • Shin, Hyung-Won;Sohn, So-Young
    • Proceedings of the Korean Statistical Society Conference
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    • 2003.05a
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    • pp.237-242
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    • 2003
  • Various kinds of estimation methods have been developed for imputation of categorical missing data. They include modal category method, logistic regression, and association rule. In this study, we propose two imputation methods (neural network fusion and voting fusion) that combine the results of individual imputation methods. A Monte-Carlo simulation is used to compare the performance of these methods. Five factors used to simulate the missing data are (1) true model for the data, (2) data size, (3) noise size (4) percentage of missing data, and (5) missing pattern. Overall, neural network fusion performed the best while voting fusion is better than the individual imputation methods, although it was inferior to the neural network fusion. Result of an additional real data analysis confirms the simulation result.

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Missing Value Imputation Technique for Water Quality Dataset

  • Jin-Young Jun;Youn-A Min
    • Journal of the Korea Society of Computer and Information
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    • v.29 no.4
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    • pp.39-46
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    • 2024
  • Many researchers make efforts to evaluate water quality using various models. Such models require a dataset without missing values, but in real world, most datasets include missing values for various reasons. Simple deletion of samples having missing value(s) could distort distribution of the underlying data and pose a significant risk of biasing the model's inference when the missing mechanism is not MCAR. In this study, to explore the most appropriate technique for handing missing values in water quality data, several imputation techniques were experimented based on existing KNN and MICE imputation with/without the generative neural network model, Autoencoder(AE) and Denoising Autoencoder(DAE). The results shows that KNN and MICE combined imputation without generative networks provides the closest estimated values to the true values. When evaluating binary classification models based on support vector machine and ensemble algorithms after applying the combined imputation technique to the observed water quality dataset with missing values, it shows better performance in terms of Accuracy, F1 score, RoC-AuC score and MCC compared to those evaluated after deleting samples having missing values.

Imputation Method Using Local Linear Regression Based on Bidirectional k-nearest-components

  • Yonggeol, Lee
    • Journal of information and communication convergence engineering
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    • v.21 no.1
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    • pp.62-67
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    • 2023
  • This paper proposes an imputation method using a bidirectional k-nearest components search based local linear regression method. The bidirectional k-nearest-components search method selects components in the dynamic range from the missing points. Unlike the existing methods, which use a fixed-size window, the proposed method can flexibly select adjacent components in an imputation problem. The weight values assigned to the components around the missing points are calculated using local linear regression. The local linear regression method is free from the rank problem in a matrix of dependent variables. In addition, it can calculate the weight values that reflect the data flow in a specific environment, such as a blackout. The original missing values were estimated from a linear combination of the components and their weights. Finally, the estimated value imputes the missing values. In the experimental results, the proposed method outperformed the existing methods when the error between the original data and imputation data was measured using MAE and RMSE.

Application of discrete Weibull regression model with multiple imputation

  • Yoo, Hanna
    • Communications for Statistical Applications and Methods
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    • v.26 no.3
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    • pp.325-336
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    • 2019
  • In this article we extend the discrete Weibull regression model in the presence of missing data. Discrete Weibull regression models can be adapted to various type of dispersion data however, it is not widely used. Recently Yoo (Journal of the Korean Data and Information Science Society, 30, 11-22, 2019) adapted the discrete Weibull regression model using single imputation. We extend their studies by using multiple imputation also with several various settings and compare the results. The purpose of this study is to address the merit of using multiple imputation in the presence of missing data in discrete count data. We analyzed the seventh Korean National Health and Nutrition Examination Survey (KNHANES VII), from 2016 to assess the factors influencing the variable, 1 month hospital stay, and we compared the results using discrete Weibull regression model with those of Poisson, negative Binomial and zero-inflated Poisson regression models, which are widely used in count data analyses. The results showed that the discrete Weibull regression model using multiple imputation provided the best fit. We also performed simulation studies to show the accuracy of the discrete Weibull regression using multiple imputation given both under- and over-dispersed distribution, as well as varying missing rates and sample size. Sensitivity analysis showed the influence of mis-specification and the robustness of the discrete Weibull model. Using imputation with discrete Weibull regression to analyze discrete data will increase explanatory power and is widely applicable to various types of dispersion data with a unified model.

Comparison of GEE Estimators Using Imputation Methods (대체방법별 GEE추정량 비교)

  • 김동욱;노영화
    • The Korean Journal of Applied Statistics
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    • v.16 no.2
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    • pp.407-426
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    • 2003
  • We consider the missing covariates problem in generalized estimating equations(GEE) model. If the covariate is partially missing, GEE can not be calculated. In this paper, we study the performance of 7 imputation methods to handle missing covariates in GEE models, and the properties of GEE estimators are investigated after missing covariates are imputed for ordinal data of repeated measurements. The 7 imputation methods include i) Naive Deletion ii) Sample Average Imputation iii) Row Average Imputation iv) Cross-wave Regression Imputation v) Carry-over Imputation vi) Bayesian Bootstrap vii) Approximate Bayesian Bootstrap. A Monte-Carlo simulation is used to compare the performance of these methods. For the missing mechanism generating the missing data, we assume ignorable nonresponse. Furthermore, we generate missing covariates with or without considering wave nonresp onse patterns.

Iterative integrated imputation for missing data and pathway models with applications to breast cancer subtypes

  • Linder, Henry;Zhang, Yuping
    • Communications for Statistical Applications and Methods
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    • v.26 no.4
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    • pp.411-430
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    • 2019
  • Tumor development is driven by complex combinations of biological elements. Recent advances suggest that molecularly distinct subtypes of breast cancers may respond differently to pathway-targeted therapies. Thus, it is important to dissect pathway disturbances by integrating multiple molecular profiles, such as genetic, genomic and epigenomic data. However, missing data are often present in the -omic profiles of interest. Motivated by genomic data integration and imputation, we present a new statistical framework for pathway significance analysis. Specifically, we develop a new strategy for imputation of missing data in large-scale genomic studies, which adapts low-rank, structured matrix completion. Our iterative strategy enables us to impute missing data in complex configurations across multiple data platforms. In turn, we perform large-scale pathway analysis integrating gene expression, copy number, and methylation data. The advantages of the proposed statistical framework are demonstrated through simulations and real applications to breast cancer subtypes. We demonstrate superior power to identify pathway disturbances, compared with other imputation strategies. We also identify differential pathway activity across different breast tumor subtypes.