• Title/Summary/Keyword: maximum entropy model

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Habitat Analysis Study of Honeybees(Apis mellifera) in Urban Area Using Species Distribution Modeling - Focused on Cheonan - (종분포모형을 이용한 도시 내 양봉꿀벌 서식환경 분석 연구 - 천안시를 중심으로 -)

  • Kim, Whee-Moon;Song, Won-Kyong;Kim, Seoung-Yeal;Hyung, Eun-Jeong;Lee, Seung-Hyun
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.20 no.3
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    • pp.55-64
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    • 2017
  • The problem of the population number of honeybees that is decreasing not only domestically but also globally, has a great influence on human beings and the entire ecosystem. The habitat of honeybees is recognized to be superior in urban environment rather than rural environment, and predicting for habitat assessment and conservation is necessary. Based on this, we targeted Cheonan City and neighboring administrative areas where the distribution of agricultural areas, urban areas, and forest areas is displayed equally. In order to predict the habitat preferred by honeybees, we apply the Maxent model what based on the presence information of the species. We also selected 10 environmental variables expected to influence honeybees habitat environment through literature survey. As a result of constructing the species distribution model using the Maxent model, 71.7% of the training data were shown on the AUC(Area Under Cover) basis, and it was be confirmed with an area of 20.73% in the whole target area, based on the 50% probability of presence of honeybees. It was confirmed that the contribution of the variable has influence on land covering, distance from the forest, altitude, aspect. Based on this, the possibility of honeybee's habitat characteristics were confirmed to be higher in wetland environment, in agricultural land, close to forest and lower elevation, southeast and west. The prediction of these habitat environments has significance as a lead research that presents the habitat of honeybees with high conservation value of ecosystems in terms of urban space, and it will be useful for future urban park planning and conservation area selection.

Consequences of land use change on bird distribution at Sakaerat Environmental Research Station

  • Trisurat, Yongyut;Duengkae, Prateep
    • Journal of Ecology and Environment
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    • v.34 no.2
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    • pp.203-214
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    • 2011
  • The objectives of this research were to predict land-use/land-cover change at the Sakaerat Environmental Research Station (SERS) and to analyze its consequences on the distribution for Black-crested Bulbul (Pycnonotus melanicterus), which is a popular species for bird-watching activity. The Dyna-CLUE model was used to determine land-use allocation between 2008 and 2020 under two scenarios. Trend scenario was a continuation of recent land-use change (2002-2008), while the integrated land-use management scenario aimed to protect 45% of study area under intact forest, rehabilitated forest and reforestation for renewable energy. The maximum entropy model (Maxent), Geographic Information System (GIS) and FRAGSTATS package were used to predict bird occurrence and assess landscape fragmentation indices, respectively. The results revealed that parts of secondary growth, agriculture areas and dry dipterocarp forest close to road networks would be converted to other land use classes, especially eucalyptus plantation. Distance to dry evergreen forest, distance to secondary growth and distance to road were important factors for Black-crested Bulbul distribution because this species prefers to inhabit ecotones between dense forest and open woodland. The predicted for occurrence of Black-crested Bulbul in 2008 covers an area of 3,802 ha and relatively reduces to 3,342 ha in 2020 for trend scenario and to 3,627 ha for integrated-land use management scenario. However, intact habitats would be severely fragmented, which can be noticed by total habitat area, largest patch index and total core area indices, especially under the trend scenario. These consequences are likely to diminish the recreation and education values of the SERS to the public.

Removal Characteristics of Sr and Cu Ions using PS-FZ Beads fabricated by Immobilization of Zeolite prepared from Coal Fly Ash from an Ulsan Industrial Complex with Polysulfone (울산산업공단에서 배출되는 coal fly ash로 합성한 제올라이트를 폴리슬폰으로 고정화하여 제조한 PS-FZ 비드의 Sr 및 Cu 제거 특성)

  • Kam, Sang-Kyu;Lee, Chang-Han;Jeong, Kap-Seop;Lee, Min-Gyu
    • Journal of Environmental Science International
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    • v.25 no.12
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    • pp.1623-1632
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    • 2016
  • Zeolite (FZ) prepared using coal fly ash from an Ulsan industrial complex was immobilized with polysulfone (PS) to fabricate PS-FZ beads. The prepared PS-FZ beads were characterized by scanning electron microscopy and Fourier transform infrared spectroscopy. The optimum ratio for preparing PS-FZ beads was 1 g of PS to 2 g of FZ. The removal efficiencies of Sr and Cu ions by the PS-FZ beads increased as the solution pH increased and nearly reached a plateau at pH 4. A pseudo-second-order model morel fit the adsorption kinetics of both ions by the PS-FZ beads better than a pseudo-first-order model. The Langmuir isotherm model fit the equilibrium data well. The maximum adsorption capacities calculated from the Langmuir isotherm model were 46.73 mg/g and 62.54 mg/g for the Sr and Cu ions, respectively. Additionally, the values of thermodynamic parameters such as free energy (${\Delta}G^{\circ}$), enthalpy (${\Delta}H^{\circ}$) and entropy (${\Delta}S^{\circ}$) were determined. The results implied that the prepared PS-FZ beads could be interesting an alternative material for Sr and Cu ion removal.

Prediction of Landslides Occurrence Probability under Climate Change using MaxEnt Model (MaxEnt 모형을 이용한 기후변화에 따른 산사태 발생가능성 예측)

  • Kim, Hogul;Lee, Dong-Kun;Mo, Yongwon;Kil, Sungho;Park, Chan;Lee, Soojae
    • Journal of Environmental Impact Assessment
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    • v.22 no.1
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    • pp.39-50
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    • 2013
  • Occurrence of landslides has been increasing due to extreme weather events(e.g. heavy rainfall, torrential rains) by climate change. Pyeongchang, Korea had seriously been damaged by landslides caused by a typhoon, Ewiniar in 2006. Moreover, the frequency and intensity of landslides are increasing in summer due to torrential rain. Therefore, risk assessment and adaptation measure is urgently needed to build resilience. To support landslide adaptation measures, this study predicted landslides occurrence using MaxEnt model and suggested susceptibility map of landslides. Precipitation data of RCP 8.5 Climate change scenarios were used to analyze an impact of increase in rainfall in the future. In 2050 and 2090, the probability of landslides occurrence was predicted to increase. These were due to an increase in heavy rainfall and cumulative rainfall. As a result of analysis, factors that has major impact on landslide appeared to be climate factors, prediction accuracy of the model was very high(92%). In the future Pyeongchang will have serious rainfall compare to 2006 and more intense landslides area expected to increase. This study will help to establish adaptation measure against landslides due to heavy rainfall.

Projection of climate change effects on the potential distribution of Abeliophyllum distichum in Korea (기후변화에 따른 우리나라 미선나무의 분포변화 예측)

  • Lee, Sang-Hyuk;Choi, Jae-Yong;Lee, You-Mi
    • Korean Journal of Agricultural Science
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    • v.38 no.2
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    • pp.219-225
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    • 2011
  • Changes in biota, species distribution range shift and catastrophic climate influence due to recent global warming have been observed during the last century. Since global warming affects various sectors, such as agriculture and vegetation, it is important to predict more accurate impact of future climate change. The purpose of this study is to examine the observed distribution of Abeliophyllum distichum in the Korean peninsula. For this purpose, two period (present and future) climate data were used. Mean data between 1950 and 2000, were used as the present value and the year 2050 and 2080 data from A1B senario in IPCC SRES were used for the future value. Potential habitation is analyzed by MaxEnt(Maximum Entropy model), and Abeliophyllum distichum's coordinates data were used as a dependent variable and independent variables are composed of environmental data such as BioClim, altitude, aspect and slope. The result of six types GCM mean calculation, the potential habitability decreased by 40-60% of the average existing distribution. The methodogies and results of this research can be applicable to the climate changing adaptation stratiegies for the biodiversity conservation.

Natural language processing techniques for bioinformatics

  • Tsujii, Jun-ichi
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2003.10a
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    • pp.3-3
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    • 2003
  • With biomedical literature expanding so rapidly, there is an urgent need to discover and organize knowledge extracted from texts. Although factual databases contain crucial information the overwhelming amount of new knowledge remains in textual form (e.g. MEDLINE). In addition, new terms are constantly coined as the relationships linking new genes, drugs, proteins etc. As the size of biomedical literature is expanding, more systems are applying a variety of methods to automate the process of knowledge acquisition and management. In my talk, I focus on the project, GENIA, of our group at the University of Tokyo, the objective of which is to construct an information extraction system of protein - protein interaction from abstracts of MEDLINE. The talk includes (1) Techniques we use fDr named entity recognition (1-a) SOHMM (Self-organized HMM) (1-b) Maximum Entropy Model (1-c) Lexicon-based Recognizer (2) Treatment of term variants and acronym finders (3) Event extraction using a full parser (4) Linguistic resources for text mining (GENIA corpus) (4-a) Semantic Tags (4-b) Structural Annotations (4-c) Co-reference tags (4-d) GENIA ontology I will also talk about possible extension of our work that links the findings of molecular biology with clinical findings, and claim that textual based or conceptual based biology would be a viable alternative to system biology that tends to emphasize the role of simulation models in bioinformatics.

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Removal of Cd(II) and Cu(II) from Aqueous Solution by Agro Biomass: Equilibrium, Kinetic and Thermodynamic Studies

  • Reddy, Desireddy Harikishore Kumar;Lee, Seung-Mok;Seshaiah, Kalluru
    • Environmental Engineering Research
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    • v.17 no.3
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    • pp.125-132
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    • 2012
  • The removal of Cd(II) and Cu(II) from aqueous solution by an agricultural solid waste biomass prepared from Moringa oleifera bark (MOB) was investigated. The biosorbent was characterized by Fourier transform infrared spectroscopy and elemental analysis. Furthermore, the effect of initial pH, contact time, biosorbent dosage, initial metal ion concentration and temperature on the biosorption of Cd(II) and Cu(II) were studied using the batch sorption technique. Kinetic studies indicated that the biosorption process of the metal ions followed the pseudo-second order model. The biosorption data was analyzed by the Langmuir, Freundlich, Dubinin-Radushkevich, and Temkin isotherm models. Based on the Langmuir isotherm, the maximum biosorption capacities for Cd(II) and Cu(II) onto MOB were 39.41 and 36.59 mg/g at 323 K, respectively. The thermodynamic parameters, Gibbs free energy (${\Delta}G^o$), enthalpy (${\Delta}H^o$), and entropy (${\Delta}S^o$) changes, were also calculated, and the values indicated that the biosorption process was endothermic, spontaneous and feasible in the temperature range of 303-323 K. It was concluded that MOB powder can be used as an effective, low cost, and environmentally friendly biosorbent for the removal of Cd(II) and Cu(II) ions from aqueous solution.

Implementation of a Dialogue Interface System Using Pattern Matching and Statistical Modeling (패턴 매칭과 통계 모델링을 이용한 대화 인터페이스 시스템의 구현)

  • Kim, Hark-Soo
    • The Journal of Korean Association of Computer Education
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    • v.10 no.3
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    • pp.67-73
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    • 2007
  • In this paper, we review essential constituents of a dialogue interface system and propose practical methods to implement the each constituent. The implemented system consists of a discourse manager, an intention analyzer, a named entity recognizer, a SQL query generator, and a response generator. In the progress of implementation, the intention analyzer uses a maximum entropy model based on statistics because the domain dependency of the intention analyzer is comparatively low. The others use a simple pattern matching method because they needs high domain portability. In the experiments in a schedule arrangement domain, the implemented system showed the precision of 88.1% in intention analysis and the success rate of 83,4% in SQL query generation.

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The Auto Regressive Parameter Estimation and Pattern Classification of EKS Signals for Automatic Diagnosis (심전도 신호의 자동분석을 위한 자기회귀모델 변수추정과 패턴분류)

  • 이윤선;윤형로
    • Journal of Biomedical Engineering Research
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    • v.9 no.1
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    • pp.93-100
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    • 1988
  • The Auto Regressive Parameter Estimation and Pattern Classification of EKG Signal for Automatic Diagnosis. This paper presents the results from pattern discriminant analysis of an AR (auto regressive) model parameter group, which represents the HRV (heart rate variability) that is being considered as time series data. HRV data was extracted using the correct R-point of the EKG wave that was A/D converted from the I/O port both by hardware and software functions. Data number (N) and optimal (P), which were used for analysis, were determined by using Burg's maximum entropy method and Akaike's Information Criteria test. The representative values were extracted from the distribution of the results. In turn, these values were used as the index for determining the range o( pattern discriminant analysis. By carrying out pattern discriminant analysis, the performance of clustering was checked, creating the text pattern, where the clustering was optimum. The analysis results showed first that the HRV data were considered sufficient to ensure the stationarity of the data; next, that the patern discrimimant analysis was able to discriminate even though the optimal order of each syndrome was dissimilar.

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Optimization of Reflectron for Kinetic and Mechanistic Studies with Multiplexed Multiple Tandem (MSn) Time-of-flight Mass Spectrometry

  • Bae, Yong-Jin;Yoon, So-Hee;Moon, Jeong-Hee;Kim, Myung-Soo
    • Bulletin of the Korean Chemical Society
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    • v.31 no.1
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    • pp.92-99
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    • 2010
  • Photoexcitation of a precursor ion inside a cell floated at high voltage installed in a tandem time-of-flight (TOF) mass spectrometer provides triple tandem mass spectrometric information and allows kinetic and mechanistic studies. In this work, the factors affecting, or downgrading, the performance of the technique were identified. Ion-optical and computational analyses showed that an optimum instrument could be designed by utilizing a reflectron with linear-plus-quadratic potential inside. Theoretical predictions were confirmed by tests with instruments built with different ion-optical layout. With optimized instruments, masses of intermediate ions in the consecutive dissociation of a precursor ion could be determined with the maximum error of $\pm5$ Da. We also observed excellent agreement in dynamical parameters (critical energy and entropy) for the dissociation of a model peptide ion determined by instruments with different ion-optical layout operated under optimum conditions. This suggests that these parameters can be determined reliably by the kinetic method developed previously when properly designed and operated tandem TOF instruments are used.