• Ocean and Polar Research
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• v.32 no.3
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• pp.269-289
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• 2010

In Summer 2008, a multidisciplinary survey was conducted onboard R/V Haeyang 2000 to understand plankton response to the three distinct physico-chemical settings that developed in the Ulleung Basin of the East Sea. Baseline settings of hydrographic conditions included the presence of the thin (<20 m) Tsushima Surface Water (TSW) on top of the Tsushima Middle Water (TMW). It extends from the Korea Strait to $37^{\circ}N$ along the $130^{\circ}E$ and then turns offshore and encompasses the relatively saline (T>$26^{\circ}C$, S>33.7) Ulleung Warm Eddy surface water centered at $36.5^{\circ}N$ and $131^{\circ}E$. A relatively colder and saline water mass appeared off the southeastern coast of Korea. It was accompanied by higher nutrient and chlorophyll-a concentrations, suggesting a coastal upwelling. Most of the offshore surface waters support low phytoplankton biomass (0.3 mg chl-a $m^{-3}$). A much denser phytoplankton biomass (1-2.3 mg $m^{-3}$) accumulated at the subsurface layer between 20-50 m depth. The subsurface chlorophyll-a maximum (SCM) layer was closely related to the nutricline, suggesting an active growth of phytoplankton at depth. The SCM developed at shallow depth (20-30 m) near the coast and deepened offshore (50-60 m). A fucoxanthin/zeaxanthin ratio was high in coastal waters while it was low in offshore waters, which indicated that diatoms dominate coastal waters while cyanobacteria dominate offshore waters. The community structure and biomass of phytoplanktonare closely related to nitrogen availability. Zooplankton biomass was higher in the coastal region than in the offshore region while species richness showed an opposite trend. Zooplankton community structure retained a coastal/offshore contrast. These suggest that summer hydrography is a stable structure, lasting long enough to allow a hydrography-specific plankton community to evolve.

• Journal of Ecology and Environment
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• v.37 no.4
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• pp.231-244
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• 2014

A study on indigenous diatoms was carried out at 49 sites from November 2008 to December 2012 in the marine and brackish plankton and benthic ecosystem in Korea. The structure of small-sized pennate diatoms was examined by means of light and scanning electron microscopy. Twenty species of diatoms were newly identified and divided into five orders, 18 families, and nine genera in this study. The nomenclature, references, specimens examined, specimen descriptions, photographs, and distribution profiles are reported here. The newly reported pennate diatoms imply several reasons why these taxa have not been recorded previously in Korea and we present the strategy to understand the diversity of diatoms in Korea.

• Journal of Fisheries and Marine Sciences Education
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• v.25 no.6
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• pp.1239-1244
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• 2013

Morphology of 4 dinoflagellates species, Amphisolenia bidentata, A. inflata, A. thrinax and Triposolenia bicornis, which belong to the Dinophysiales, were studied by light and scanning electronmicroscope. The plankton samples for this study were collected from Jeju-Do, South Korea in February, April, September and November 2007. Three Amphisolenia species have large cell size ($125{\sim}890{\mu}m$) then T. bicornis ($45{\sim}50{\mu}m$). Cells of Amphisolenia and Triposolenia with unique morphological features were divided into the head, neck, anterior part of the body (APB), mid-body and posterior process. This is the first record of those four species from Korea.

• ALGAE
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• v.36 no.4
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• pp.333-340
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• 2021

Phylotranscriptomics is the study of phylogenetic relationships among taxa based on their DNA sequences derived from transcriptomes. Because of the relatively low cost of transcriptome sequencing compared with genome sequencing and the fact that phylotranscriptomics is almost as reliable as phylogenomics, the phylotranscriptomic analysis has recently emerged as the preferred method for studying evolutionary biology. However, it is challenging to perform transcriptomic and phylogenetic analyses together without programming expertise. This study presents a protocol for phylotranscriptomic analysis to aid marine biologists unfamiliar with UNIX command-line interface and bioinformatics tools. Here, we used transcriptomes to reconstruct a molecular phylogeny of dinoflagellate protists, a diverse and globally abundant group of marine plankton organisms whose large and complex genomic sequences have impeded conventional phylogenic analysis based on genomic data. We hope that our proposed protocol may serve as practical and helpful information for the training and education of novice phycologists.

• Journal of Plant Biology
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• v.8 no.4
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• pp.7-25
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• 1965

In order to clearify the microflora of the lower course of the Han River and the effect of the marine water on the Han River, the study was carried out at Paldang, Kwangjang, Noryangjin, and Haengju for 4 months (from May till September in 1965). The results obtained are as follows: 1) Water temperature, transparency, light intensity, pH, silicate, and salinity were determined as environmental conditions. 2) Samples collected from 4 stations were identified and classified by Engler's classification system. It resulted in 4 Phyla, 3 Classes, 13 Orders, 25 Families, 61 Genera, 155 Species, and 16 Varieties. The total numbers of phytoplanktons identified are 171. Of the number, 106 species and 12 varieties were recorded in this paper for the first time. 3) A comparative observation on the distribution of marine phytoplanktons and salinity in the Han River showed a fact that the Han River was biologically affected in the middle portion between Noryangjin and Haengju by marine water. Furthermore, the salinity determined at Haengjuduring a day(at high tide, September 26, 1995) supported the above fact. 4) Four species among the identified species are saprobic planktons and it is regarded as the forms derived from Chunggyechon.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.15 no.1
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• pp.25-35
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• 2010

The biodiversity of eukaryotic plankton has commonly been used to evaluate the status of aquatic ecosystems. Therefore, an accurate and rapid method for species identification is needed to reveal the biodiversity of environmental water samples. To date, molecular methods have provided a great deal of information that has enabled identification of the hidden biodiversity in environmental samples. In this study, we utilized environmental polymerase chain reaction (PCR) and constructed the 18S nuclear ribosomal RNA clone library from environmental water samples in order to develop more efficient methods for species identification. For the molecular analysis, water samples were collected from the Seonakdong River (Gimhae Bridge) and the coast of Namhae，(Namhaedo). Colony PCR and restriction fragment length polymorphism of PCR (PCR-RFLP) were then adopted to isolate unique clones from the 18S rDNA clone library. Restriction fragment length polymorphism pattern analysis of the Gimhae Bridge sample revealed 44 unique clones from a total of 60 randomly selected clones, while analysis of the Namhae sample revealed 27 unique clones from 150 clones selected at random. A BLAST search and subsequent phylogenetic analysis conducted using the sequences of these clones revealed hidden biodiversity containing a wide range of taxonomic groups (Heterokontophyta (7), Ciliophora (23), Dinophyta (1), Chytridiomycota (1), Rotifera (1) and Arthropoda (11) in the Gimhae Bridge samples Ciliophora (4), Dinophyta (3), Cryptophyta (1), Arthropoda (19) in the Namhae samples). Therefore, the molecular monitoring method developed here can provide additional information regarding the biodiversity and community structure of eukaryotic plankton in environmental samples and helps construct a useful database of biodiversity for aquatic ecosystems.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.46 no.1
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• pp.1-9
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• 2013

Fisheries' biological resources were considered public resources before the 1990s. Every country could access and use these resources without regulation. However, the United Nations adopted the Convention on Biological Diversity and the privileges and rights to these resources were attributed to countries. This research starts with the research background and social and academic value of "The Jasan Eobo (or Report on Marine Organisms in the Coastal Waters near Heuksan Island)" by Jeong Yak-Jeon, who pioneered the new field of Fisheries Science and Marine Biology in Korea in the early 1800s. We also searched for recent results from the Marine Bio-Diversity Research Activities of the Korean National Council for Conservation of Nature (KNCCN) and the Ministry of Maritime Affairs and Fisheries (MOMAF). KNCCN reported that marine bio-diversity comprised approximately 6,500 species in 1996, and the Ministry of Maritime Affairs and Fisheries reported there were about 10,000 species in 2007. Among these marine species, plankton account for about 25%, seaweeds 11%, invertebrates 52%, and vertebrates 12% in Korean Coastal Areas. The Ministry for Food, Agriculture, Forestry, and Fisheries (MIFAFF) enacted a law for Agriculture and Fisheries Resources Management in 2012; this law includes the preservation of marine ecosystems, the conservation of wetlands and the preservation of fisheries resources, and describes the boundary of taxonomy for new species and unknown species that could be identified in the near future. To follow the new regulation for Access to General Resources and Benefit-Sharing, this research suggests (1) the importance of taxonomy for new species and unknown species as a goal of "No Name = No Information", (2) integrated research on bio-diversity, species distributions and the abundance of fisheries resources, both in local areas and in Korean Coastal Areas, and (3) the observance of international regulations or agreements for benefit-sharing without additional damage in the future.

• Journal of Environmental Science International
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• v.23 no.12
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• pp.2015-2028
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• 2014

We analyzed with HPLC (High Performance Liquid Chromatography) analysis photosynthetic pigments and environmental factors, microscopic observations of the phytoplankton and zooplankton in the seawater every month from February 2009 to November 2010 in Haengam Bay. The level of dissolved inorganic nutrients was the highest between July and September, when freshwater influx was at its peak, whereas chlorophyll a levels were the highest in April and August. Also, phytoplankton pigment concentration increased when dissolved inorganic nutrients are carried into nearshore waters by rainfall runoff. Based on identification of phytoplankton and photosynthetic pigments results, diatoms were mainly dominant while dinoflagellate populations increased at July and August 2009, May 2010. The zooplankton communities are dominated in terms of Noctiluca scintillans. The contribution of Noctiluca scintillans in 2010 accounts for approximately 77.3% of the total zooplankton. Distribution patterns over time of zooplankton in the seasonal distribution of phytoplankton showed a different pattern.

• Journal of Fisheries and Marine Sciences Education
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• v.29 no.3
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• pp.869-877
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• 2017

The monthly variations of zooplankton community were investigated at 12 stations near Tongyeong and Namhaedo in the South Sea of Korea from April to July, 2012. Zooplankton samples were collected by a plankton net (RN80) from near the bottom to the surface. Zooplankton community consisted of 97 taxa, and the mean abundance ranged from $213inds.m^{-3}$ in July to $426inds.m^{-3}$ in April. Copepods constituted 38.98% of zooplankton abundance, and included 39 species. Calanus sinicus, Corycaeus affinis, Paracalanus parvus s.l., copepodids, Evadne nordmonni, Podon leuckarti, cirriped nauplii, Muggiacea sp., Diphyes sp., and Zonosagitta bedoti were dominant species. Of these, Calanus sinicus was the most abundant throughout the study period, being constituted 18.6% of total zooplankton abundance. The density variations of dominant species between stations and months were correlated with the environmental factors. Zooplankton community varied with by sampling months, being influenced by monthly oceanographic variations.

• Ocean and Polar Research
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• v.29 no.3
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• pp.217-231
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• 2007

To explore limiting factors of spring bloom caused by waste disposal after dumping activity commenced in the Yellow Sea, we used a 1-dimensional temperature-ecological coupled model. The vertical structure of temperature and vertical diffusivity (Kh) are calculated by the temperature model with sea surface temperature using the 2.5 layers turbulence closure scheme. The ecological model applied results at the temperature model consisted of five state variables (DIN, DIP, phytoplankton, zooplankton, and detritus) forced by photosynthetically available radiation. We simulate year-to-year variations of plankton and nutrients using the coupled model from 1998 to 2000 and compare results of the model with observed data. It turned out that temperature is the growth factor of spring bloom in dumping area. During the winter the weak stratification made sufficient supply of the accumulated nutrients from the sea bed into the upper water column and led to the bloom in the coming spring. Radiation also turned out to be another important factor of spring bloom in the study area. Insufficient radiation of March 1999 showed low chlorophyll-a concentration despite sufficient nutrients in the surface.