• Title/Summary/Keyword: lineage II

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Screening of Chicken Genes Related to Germ Cell Development (닭에서 생식세포 발달에 관여하는 유전자 검색)

  • Lee, Jee-Young;Kim, Hee-Bal;Kim, Duk-Kyung;Song, Ki-Duk;Lim, Jeong-Mook;Han, Jae-Yong
    • Journal of Animal Science and Technology
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    • v.49 no.2
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    • pp.183-194
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    • 2007
  • We examined the expression patterns of the chicken TCs(tentative consensus sequences) originated from GermOnline genes in various chicken tissues, applying information from GermOnline to chicken organisms. 42 TCs among 84 chicken homologous TCs from the pool of 84 genes related to germ cell lineage in mouse(10), rat(71) and human(3) had high homology based on a BLAST search. Of these, Hmgcs2 and Sycp3 was shown to be expressed in a testis- specific manner and a reproductive organ(testis and ovary)-specific manner, respectively, by RT- PCR analysis. Crmp4, Cyct, Ldhc, Epha7, Pcsk4 and Dnmt3a are expressed in brain, testis, and ovary. The characterization of chicken genes originated from GermOnline in this research may give an enormously useful source of information related to germ cell development.

Vertical distribution and vascular plants in the Gakho mountain (Yeongdong-gun), Korea (각호산(영동군)의 관속식물과 수직분포)

  • Jung-Hyun Kim;Jin-Suk Kim;Sookyung Shin;Tae-Im Heo;Young Hoon Kim;Sunghyuk Park;Jin-Seok Kim
    • Korean Journal of Environmental Biology
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    • v.41 no.1
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    • pp.60-88
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    • 2023
  • This study was conducted to investigate the vertical distribution and vascular plants in the Gakho mountain. Form the results of three field surveys from May 2022 to September 2022, a total of 478 total taxa, representing 426 species, 11 subspecies, 35 varieties, four forms, and two hybrids were identified, which were categorized in 282 genera and 94 families. We identified the elevational distribution ranges of 398 taxa of vascular plants. Among them, 19 taxa were endemic to Korea, one taxon was identified as a rare plant. The floristic target plants amounted to 72 taxa, specifically two taxa of grade V, two taxa of grade IV, 16 taxa of grade III, 27 taxa of grade II, and 25 taxa of grade I. Further, 71 taxa were identified as northern lineage plants. A total of 19 taxa of alien plants were identified, with a Naturalized Index of 4.0%, an Urbanization Index of 6.6%, and three plants that disturbed the ecosystem. The result of analyzing the pattern of species richness showed a reversed hump shape with minimum richness at mid-high elevation. A cluster analysis showed a high degree of similarity between adjacent elevation sections that are geographically adjacent with similar habitat environments. Warmth index in the Gakho mountain ranged from 57.2℃·month to 84.2℃·month. Our results provide basic data on vascular plants and valuable information on elevational distribution ranges of current plant species in the Gakho mountain, which could serve as a baseline for comparison of the shifts in elevation under future climate change.

Floristic study of Mt. Seongdeok (Ganghwa-gun) in Korea (성덕산(강화군)의 관속식물상)

  • Jung-Hyun Kim;Sung-Ae Park
    • Korean Journal of Environmental Biology
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    • v.40 no.4
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    • pp.615-630
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    • 2022
  • This study was conducted to investigate the flora of Mt. Seongdeok (Ganghwa-gun) in Korea. From the results of nine field surveys from March 2020 to July 2022, a total of 445 total taxa, representing 397 species, nine subspecies, 35 varieties, two forms and two hybrids were identified, which were placed in 273 genera and 93 families. The plant formation of Mt. Seongdeok is a deciduous broad-leaved and conifer mixed forest, which is common in the middle part of the Korean Peninsula. Most of the mountain is covered by a young secondary forest, which is mainly composed of Quercus ssp. and Pinus ssp. Among them, five taxa were endemic to Korea, one taxon were endangered plant and two taxa were red list plants. The floristic target plants amounted to 27 taxa, specifically one taxon of grade V, four taxa of grade III, seven taxa of grade II, and 15 taxa of grade I. And 43 taxa were northern lineage plants. A total of 46 species of alien plants were identified, with a Naturalized Index of 10.3%, an Urbanization Index of 11.7%, and six plants that disturbed the ecosystem. Our results provide basic data on vascular plants flora, and plant diversity and distributional changes.

STAT3 is Activated in a Subset of Benign and Malignant Chondroid Tumors (양성 및 악성 연골 종양에서의 STAT3 활성화)

  • Park, Hye-Rim;Park, Yong-Koo
    • The Journal of the Korean bone and joint tumor society
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    • v.15 no.2
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    • pp.130-137
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    • 2009
  • Purpose: STAT3 is an oncogene that regulates critical cellular processes, and its constitutive activation has been demonstrated to correlate with biological and clinical features in many types of human malignancy. Materials and Methods: In this study, STAT3 activation was assessed in variable benign and malignant chondroid tumors in bone by immunohistochemistry using a monoclonal antibody specific for $tyrosine^{705}$-phosphorylated STAT3 ($pSTAT3^{tyr705}$). Results: Among conventional chondrosarcomas (n=17), three cases(50%) of grade III chondrosarcomas were pSTAT3-positive. All grade I and II chondrosarcomas were pSTAT3-negative. This pSTAT3 positivity according to the histologic grade was statistically significant (p=0.0432). Two cases(50%) of clear cell chondrosarcomas were pSTAT3-positive. Six cases (50%) among 12 benign chondroid tumors(6 enchondromas, 3 chondroblastomas, and 3 chondromyxoid fibromas) were also $pSTAT3^{tyr705}$-positive. Conclusion: In conclusion, STAT3 activation is associated with higher tumor grade in conventional chondrosarcomas. Our results suggest that STAT3 is activated in a subset of benign and malignant chondroid tumors, and may support the extension of the cancer stem cell hypothesis to include tumors of cartilaginous lineage.

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Analysis of Molecular Expression in Adipose Tissue-Derived Mesenchymal Stem Cells : Prospects for Use in the Treatment of Intervertebral Disc Degeneration

  • Jin, Eun-Sun;Min, Joongkee;Jeon, Sang Ryong;Choi, Kyoung Hyo;Jeong, Je Hoon
    • Journal of Korean Neurosurgical Society
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    • v.53 no.4
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    • pp.207-212
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    • 2013
  • Objective : Recent studies have shown encouraging progress toward the use of autogenic and allogenic mesenchymal stem cells (MSCs) to arrest, or even lead to partial regeneration in, intervertebral disc (IVD) degeneration. However, this technology is still in its infancy, and further development is required. The aim of this study was to analyze whether rat adipose-derived mesenchymal stem cells (ADMSC) can differentiate towards IVD-like cells after treatment with transforming growth factor ${\beta}3$ (TGF-${\beta}3$) in vitro. We also performed quantitative analysis of gene expression for ADMSC only, ADMSCs treated with TGF-${\beta}3$, and co-cultured ADMSCs treated with TGF-${\beta}3$. Methods : ADMSCs were sub-cultured to homogeneity and used in fluorocytometry assays for CD11, CD45, and CD90/Thy1. ADMSCs were differentiated in spheroid culture towards the chondrogenic lineage by the presence of TGF-${\beta}3$, dexamethasone, and ascorbate. We also co-cultured pure ADMSCs and nucleus pulposus cells in 24-well plates, and performed immunohistochemical staining, western blotting, and RT-PCR for quantitative analysis of gene expression. Results : Results of fluorocytometry were positive for CD90/Thy1 and negative for CD11 and CD45. TGF-${\beta}3$-mediated induction of ADMSCs led to the expression of the differentiation markers of intervertebral disc-like cells, such as aggrecan, collagen II, and sox-9. Co-cultured ADMSCs treated with TGF-${\beta}3$ showed higher expression of differentiation markers and greater extracellular matrix production compared with ADMSCs treated with TGF-${\beta}3$ alone. Conclusion : ADMSC treated with TGF-${\beta}3$ may be an attractive source for regeneration therapy in degenerative IVD. These findings may also help elucidate the pathologic mechanism of MSC therapy in the degeneration of IVD in vivo.

Sequence diversity of Mitochondrial DNA HV1 in Korean population (한국인 집단의 미토콘드리아 DNA HV1 부위에서의 염기서열 다양성)

  • Lim, Si-Keun;Kim, Eung-Su;Kim, Soon-Hee;Park, Ki-Won;Han, Myun-Soo
    • Analytical Science and Technology
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    • v.18 no.4
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    • pp.362-367
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    • 2005
  • The human mitochondrial genome (mtDNA) has been an important tool in the field of forensic investigations. Within the entire mtDNA molecule, the non-coding control region which is approximately 1,100 bp including hypervariable region I and II (HV1 and HV2) is widely studied because it is highly polymorphic and useful for human identification purposes. In this study, 360 unrelated Koreans were analyzed in HV1. The number of polymorphic sites and genetic lineage were 124 and 210, respectively. The most prevalent substitution was C-T and 75.8% of DNA showed C-T substitution at 16223. There were 20 kinds of polymorphism between 16180 and 16193 including insertion and deletion. The most frequent haplotype was [16223T, 16362C] representing 5%. Approximately 25.9% of DNA showed the same haplotype in at least two samples. The gene diversity was calculated to 0.996 and the probability of two unrelated perosons having the same haplotype was determined to 0.7%.

A Study on the Vascular Flora and its Management Plan at The Forest Genetic Resource Reserve of Mt. Munsu (Gimpo) (문수산(김포) 산림유전자원보호구역 관속식물상 변화 및 관리방안)

  • Yun, Ho Geun;Lee, Ah young;An, Jong Bin;Hwang, Tae Young;Lee, Jong Won
    • Korean Journal of Plant Resources
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    • v.34 no.4
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    • pp.311-338
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    • 2021
  • This study was investigated to find out the distribution of vascular flora and remarkable plants and its factors and management plan in the forest genetic resource reserve of Mt. Munsu, located in the DMZ and DMZ border area in Gimpo, Gyeonggi-do province. The survey was carried out 17 times from April 2019 to October 2020. First of all, in the forest genetic resource reserve of the Mt. Munsu, a total of 444 taxa in 95 families, 276 genera, 395 species, 13 subspecies, 33 varieties and 3 forms. This result was found to be about 9.09% of the total 4,881 taxa of vascular plants in Korea. In addition, endemic plants were classified as 6 taxa. Floristic special and rare plants were identified as 39 taxa and 3 taxa, respectively. Lastly, the invasive alien plants that appeared in Mt. Munsu of the forest genetic resource reserve were observed in 58 taxa. Moreover, the naturalization rate was 13.1% and the urbanization index was calculated to be 18.0%. As a result of comparing the vascular flora at the forest genetic resource reserve on Mt. Munsu identified in this study with previous studies, it was found the number of taxa was decreased compared to the previous studies, despite the fact that the recent survey section was wider and more varies routes were investigated. In particular, it was confirmed that the number of rare and endemic plants decreased significantly, and the number of invasive plants greatly spread to forest roads and hiking trails. Therefore, it is considered that the forest rest year system should be introduced for the conservation and management of native plants in the forest genetic resource reserve.

A Study on the Distribution and Conservation Plan of Vascular Flora in Gyodong Island (교동도의 관속식물상 분포 및 보전방안 연구)

  • Yun, Ho-Geun;Kim, Sang-Jun;Lee, Jong-Won
    • Journal of Environmental Impact Assessment
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    • v.31 no.1
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    • pp.11-46
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    • 2022
  • This study was carried out to examine vascular plants and invasive alien plants in Gyodong Island, located at the northwestern Civilian Control Line (CCL) of Ganghwa-gun, Incheon, and to use them as basic data for systematic management of identified plants and establishing biodiversity conservation measures. The survey was conducted 13 times from April 2019 to August 2021. The vascularflora in Gyodong Island was identified as 109 families, 378 genera, 641 species, 15 subspecies, 49 variants, 8 forma, a total of 713 taxa. This was found to be about 15.36% of the total 4,641 taxa of vascular plants in Korea. The northern linage plants on the Korean Peninsula appearing in the Gyodong Island area were identified in 83 classification groups, including Red-based leaf edge (Carex erythrobasis H.Lev. & Vaniot). Korea endemic plants were identified as 16 taxa such as Seoul wild-ginger [Asarum heterotropoides var. seoulense (Nakai) Kitag.], and a total of 20 taxa of rare plants designated by IUCN were observed, including the endangered grade Beardless iris (Iris ruthenica Ker Gawl.). Floristic target species were classified with a total of 99 taxa. For V grade, Beardless iris 1 taxon was found. and also IV grade and III grade were identified in 8 taxa and 20 taxa respectively. The invasive alien plants identified as 75 taxa, such as Verbesina alternifolia (L.) Britton ex Kearney. The naturalization rate was 10.51%, and the urbanization index was calculated as 23.29%. Since large-scale construction has been currently underway on Hwagae Mt. in Gyodong Island as the target of survey area, the influx of invasive plants will be expected to promote. Therefore, it is urgent to establish in-situ protection and conservation measures for notable plants such as Beardless iris and Water smartweed [Persicaria amphibia (L.) S.F.Gray].