• 제목/요약/키워드: intermediate state

검색결과 485건 처리시간 0.025초

중간단계의 구조적 안정성을 통한 HubWA 단백질의 접힘(folding) 반응 탐색 (Study of HubWA Protein Folding Reaction by Measuring the Stability of Folding Intermediate)

  • 박순호
    • 대한화학회지
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    • 제67권2호
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    • pp.81-88
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    • 2023
  • HubWA 단백질을 모델로 삼아 소수성 아미노산이 folding 반응에 끼치는 영향을 탐색하기 위하여 HubWA에 있는 I와 L을 V로 치환한 변이 단백질의 folding kinetics를 측정하였다. 변이 단백질의 folding kinetics는 HubWA 단백질과 마찬가지로 three-state on-pathway mechanism(U ⇌ I ⇌ N, U는 unfolded 상태, I는 중간단계, N은 native 상태를 의미한다)을 따르는 것으로 나타났다. Folding kinetics 분석을 통하여 three-state 반응의 elementary 반응과 전체 반응의 자유에너지인 ΔGoUI, ΔGoIN, ΔGoUN을 얻었고, 변이 단백질의 자유에너지와 HubWA 단백질의 자유에너지의 차(ΔΔGoUI = ΔGoUI(변이 단백질) - ΔGoUI(HubWA), ΔΔGoUN = ΔGoUN(변이 단백질) - ΔGoUN(HubWA))의 비인 ΔΔGoUI/ΔΔGoUN를 통하여 중간단계가 전체 folding 반응에 끼치는 영향을 각 소수성 잔기 별로 알아볼 수 있었다. HubWA의 입체구조에서 α-helix와 β-sheet가 상호작용하는 소수성 코어에 위치하는 아미노산인 I3, I13, L15, I30, L43, I61, L67을 V로 치환한 변이 단백질의 ΔΔGoUI/ΔΔGoUN 값이 ~0.5로 나타난 점은 이들 아미노산이 중간단계에서 native 상태보다는 느슨하지만 비교적 견고한 구조를 이루는 것으로 해석되었다. HubWA 입체구조에서 α-helix의 아미노말단에 위치하는 I23, 특정 이차구조가 없는 부위에 위치하는 I36, β-strand 5의 카복실말단에 위치하는 L69를 V로 치환한 변이 단백질의 ΔΔGoUI/ΔΔGoUN 값이 0.4 이하로 나타난 것은 이들 아미노산 잔기가 중간단계에서는 비교적 느슨한 구조를 이루다 중간단계에서 native 단계로 진행하는 folding 과정의 후반부에 HubWA의 입체구조에 견고하게 편입되는 것으로 해석되었다. HubWA의 입체구조에서 두 번째 β-strand의 카복실말단에 위치한 V17, 짧은 네 번째 β-strand의 카복실말단에 위치한 L50, 짧은 310-helix의 아미노말단에 위치한 L56이 중간단계에서 서로 상호작용을 하는 점은 이들 아미노산을 V로 치환한 변이 단백질의 ΔΔGoUI/ΔΔGoUN값이 0.8 이상으로 나타난 점을 통하여 알 수 있었다. L50과 L56은 짧은 β-strand와 310-helix를 제외하고 특별한 이차구조가 존재하지 않는 부위(46번째 아미노산 잔기부터 62번째 아미노산 잔기 까지)에 위치하는데, 이들 아미노산이 V17과 더불어 folding 반응의 초기에 견고하게 상호작용을 하는 것은 HubWA단백질이 folding 과정의 초기에 응집체를 형성하는 것을 막아주는 역할을하는 것으로 생각되었다.

Mass-analyzed Threshold Ionization Spectrometry with Scrambling Field Optimized for the Study of State-selective Ion Reaction Dynamics

  • Park, Sang-Tae;Kim, Hong-Lae;Kim, Myung-Soo
    • Bulletin of the Korean Chemical Society
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    • 제23권9호
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    • pp.1247-1252
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    • 2002
  • Mass-analyzed threshold ionization (MATI) technique is optimized to generate substantial amount of state-selected molecular ions sufficient for dynamics study. The main strategy is to stabilize intermediate (n = 100- 200) Rydberg states by l,m-mix ing induced by AC field. Electrical jitter inherent in high voltage switching is utilized for this purpose. A related technique to locate the MATI onset is also described.

A Study on the Mechanism for Photochemical Insertion of Methanol Into Aryl Ketocarbenes

  • Sung, Dae-Dong;Lee, Jong-Pal;Lee, Yong-Hee;Ryu, Worl-Sun;Ryu, Zoon-Ha
    • Journal of Photoscience
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    • 제7권1호
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    • pp.15-19
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    • 2000
  • The photochemical reaction mechanism has been investigated for methanol insertion into the p-substituted phenylketo carbenes. The triplet spin state of phenyl koto carbene is stabilized by the neighbored carbonyl electrons. When the phenylketo carbene reacts with methanol, the ylied intermediate is formed, then moves to the activated transition state.

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The C$_4$ Photocycloadduct Formation of Khellin with Some Olefins

  • Ho Kwon Kang;Sang Chul Shim
    • Bulletin of the Korean Chemical Society
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    • 제10권6호
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    • pp.543-546
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    • 1989
  • The photocycloaddition reaction of khellin with several olefins has been investigated. The photocycloadducts are formed regioselectively on furanyl 4',5'-double bond of khellin probably due to the localization of excitation energy on the furanyl 4',5'-double bond in the reactive excited state. The photocycloaddition reaction proceeds through the excited triplet state and the same product was formed when khellin is irradiated with dimethylfumarate or dimethylmaleate indicating the formation of common intermediate. The quantum yields of photocycloadduct formation, fluorescence, and intersystem crossing are very sensitive to proton-donating ability of solvents.

Efficient Post-Quantum Secure Network Coding Signatures in the Standard Model

  • Xie, Dong;Peng, HaiPeng;Li, Lixiang;Yang, Yixian
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제10권5호
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    • pp.2427-2445
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    • 2016
  • In contrast to traditional "store-and-forward" routing mechanisms, network coding offers an elegant solution for achieving maximum network throughput. The core idea is that intermediate network nodes linearly combine received data packets so that the destination nodes can decode original files from some authenticated packets. Although network coding has many advantages, especially in wireless sensor network and peer-to-peer network, the encoding mechanism of intermediate nodes also results in some additional security issues. For a powerful adversary who can control arbitrary number of malicious network nodes and can eavesdrop on the entire network, cryptographic signature schemes provide undeniable authentication mechanisms for network nodes. However, with the development of quantum technologies, some existing network coding signature schemes based on some traditional number-theoretic primitives vulnerable to quantum cryptanalysis. In this paper we first present an efficient network coding signature scheme in the standard model using lattice theory, which can be viewed as the most promising tool for designing post-quantum cryptographic protocols. In the security proof, we propose a new method for generating a random lattice and the corresponding trapdoor, which may be used in other cryptographic protocols. Our scheme has many advantages, such as supporting multi-source networks, low computational complexity and low communication overhead.

MPLS 시스템에서 트래픽 엔지니어링 확장을 고려한 IS-IS 라우팅 프로토콜 (An IS-IS Routing Protocol with Traffic Engineering Extensions in MPLS System)

  • 양미정;박혜경;함진호;김상하
    • 한국정보과학회논문지:컴퓨팅의 실제 및 레터
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    • 제10권5호
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    • pp.365-374
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    • 2004
  • 본 논문에서는 IP 라우팅을 위한 IS-IS 라우팅 프로토콜의 설계 및 구현 방법에 관하여 제시하고자 한다. IS-IS는 대표적인 링크 상태 라우팅 프로토콜 중 하나로 확장성 및 운용의 용이성 등으로 인해 최근 백본 망 및 대형 사업자 망에서 적용 범위를 넓히고 있는 라우팅 프로토콜이다. 따라서, 백본망으로 사용되는 MPLS 시스템에서의 IS-IS 라우팅 프로토콜의 구현 기술은 중요한 요소가 된다 특히, MPLS 시스템에서 품질 보장형 서비스를 제공하기 위해서는 확장 IS-IS 프로토콜에서의 망의 상태 정보 및 가용 자원 정보의 전달이 선행되어야 한다. 따라서, 본 논문에서는 IP 라우팅을 위한 IS-IS 라우팅 프로토콜 및 트래픽 엔지니어링을 위한 확장 IS-IS 라우팅 프로토콜의 설계 및 ATM 기반 MPLS 시스템에서의 구현 기술을 제시하고자 한다.

열분해법에 의한 전력기기용 초전도 합성 기술에 관한 연구 (A Study on the Fabrication of Superconductor Using Pyrolysis Methods for Electric power Machinery)

  • 이상헌;이영희
    • 한국전기전자재료학회:학술대회논문집
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    • 한국전기전자재료학회 2005년도 추계학술대회 논문집 Vol.18
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    • pp.153-154
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    • 2005
  • A high Tc superconducting with a nominal composition of $Bi_2Sr_2Ca_2Cu_3O_Y$ was prepared by the citarte method. The solid precursor produced by the dehydration of the gel at 120$^{\circ}C$ for 12h is not in the amorphous state as expected but in a crystalline state. X-ray diffraction peaks of nearly the same angular position as the peaks of high Tc phase were observed in the precursor. After pyrolysis at 400$^{\circ}C$ and calcination at 840$^{\circ}C$ for 4h, the (001)peak of the high Tc phase was cleary observed. Experimental results suggest that the intermediate phase formed before the formation of the superconducting phase may be the most important factro in determining whether it is easy to form the high Tc phase or not, because the nucleation barriers of the two superconducting phase may be altered by the variation of the crystal structures of those intermediate phase.

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Study of Substitution Effect of Anthraquinone by SERS Spectroscopy

  • Lee, Chul-Jae;Kang, Jae-Soo;Park, Yong-Tae;Rezaul, Karim Mohammad;Lee, Mu-Sang
    • Bulletin of the Korean Chemical Society
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    • 제25권12호
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    • pp.1779-1783
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    • 2004
  • In the present study, we carried out comparative research on the anthraquinones Raman spectrum and on the anthraquinones derivative 1,4-diamino-anthraquinone focusing on change in its intermediate in terms of pH and change in the substituent. WE use the SERS method and employ a silver sol prepared by Creighton et al.'s method. From the analysis of the UV spectrum of the mixture solution of 1,4-diamino-anthraquinone and silver sol, we could see that the 1,4-diamino-anthraquinone physically adsorbs silver sol. In terms of the adsorbing orientation, the adsorption of the nitrogen atom in the amino group is perpendicular to the surface of silver sol according to the surface selection rule. From the structure of the 1,4-diamino-anthraquinone intermediate according to the change of pH, we could see that the C=O bond is strengthened in the acidic state and weakened in the neutral and the alkaline state because of the resonance effect of the amines.

유기금속염을 이용한 고효율 전력 전송용 초전도 전구체 합성 (Synthesis of high functional Superconducting Precursor using Organic metal salts method for Electric power transmission)

  • 이상헌
    • 한국전기전자재료학회:학술대회논문집
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    • 한국전기전자재료학회 2005년도 하계학술대회 논문집 Vol.6
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    • pp.270-271
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    • 2005
  • A high Tc superconducting with a nominal composition of $Bi_2Sr_2Ca_2Cu_3O_Y$ was prepared by the citarte method. The solid precursor produced by the dehydration of the gel at $120^{\circ}C$ for 12h is not in the amorphous state as expected but in a crystalline state. X-ray diffraction peaks of nearly the same angular position as the peaks of high Tc phase were observed in the precursor. After pyrolysis at $400^{\circ}C$ and calcination at $840^{\circ}C$ for 4h, the (001)peak of the high Tc phase was cleary observed. Experimental results suggest that the intermediate phase formed before the formation of the superconducting phase may be the most important factro in determining whether it is easy to form the high Tc phase or not. because the nucleation barriers of the two superconducting phase may be altered by the variation of the crystal structures of those intermediate phase.

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