• Title/Summary/Keyword: integrated index

검색결과 757건 처리시간 0.027초

A Universal Analysis Pipeline for Hybrid Capture-Based Targeted Sequencing Data with Unique Molecular Indexes

  • Kim, Min-Jung;Kim, Si-Cho;Kim, Young-Joon
    • Genomics & Informatics
    • /
    • 제16권4호
    • /
    • pp.29.1-29.5
    • /
    • 2018
  • Hybrid capture-based targeted sequencing is being used increasingly for genomic variant profiling in tumor patients. Unique molecular index (UMI) technology has recently been developed and helps to increase the accuracy of variant calling by minimizing polymerase chain reaction biases and sequencing errors. However, UMI-adopted targeted sequencing data analysis is slightly different from the methods for other types of omics data, and its pipeline for variant calling is still being optimized in various study groups for their own purposes. Due to this provincial usage of tools, our group built an analysis pipeline for global application to many studies of targeted sequencing generated with different methods. First, we generated hybrid capture-based data using genomic DNA extracted from tumor tissues of colorectal cancer patients. Sequencing libraries were prepared and pooled together, and an 8-plexed capture library was processed to the enrichment step before 150-bp paired-end sequencing with Illumina HiSeq series. For the analysis, we evaluated several published tools. We focused mainly on the compatibility of the input and output of each tool. Finally, our laboratory built an analysis pipeline specialized for UMI-adopted data. Through this pipeline, we were able to estimate even on-target rates and filtered consensus reads for more accurate variant calling. These results suggest the potential of our analysis pipeline in the precise examination of the quality and efficiency of conducted experiments.

Seismic fragility evaluation of the base-isolated nuclear power plant piping system using the failure criterion based on stress-strain

  • Kim, Sung-Wan;Jeon, Bub-Gyu;Hahm, Dae-Gi;Kim, Min-Kyu
    • Nuclear Engineering and Technology
    • /
    • 제51권2호
    • /
    • pp.561-572
    • /
    • 2019
  • In the design criterion for the nuclear power plant piping system, the limit state of the piping against an earthquake is assumed to be plastic collapse. The failure of a common piping system, however, means the leakage caused by the cracks. Therefore, for the seismic fragility analysis of a nuclear power plant, a method capable of quantitatively expressing the failure of an actual piping system is required. In this study, it was conducted to propose a quantitative failure criterion for piping system, which is required for the seismic fragility analysis of nuclear power plants against critical accidents. The in-plane cyclic loading test was conducted to propose a quantitative failure criterion for steel pipe elbows in the nuclear power plant piping system. Nonlinear analysis was conducted using a finite element model, and the results were compared with the test results to verify the effectiveness of the finite element model. The collapse load point derived from the experiment and analysis results and the damage index based on the stress-strain relationship were defined as failure criteria, and seismic fragility analysis was conducted for the piping system of the BNL (Brookhaven National Laboratory) - NRC (Nuclear Regulatory Commission) benchmark model.

U-러닝 환경에서의 통합적 수업 전략 연구 (The Study on Integrated Teaching and Learning Strategy u-Learning)

  • 유정아;한선관
    • 정보교육학회논문지
    • /
    • 제13권2호
    • /
    • pp.127-134
    • /
    • 2009
  • 무선인터넷과 이동형 컴퓨터의 발달로 다양한 수업 전략과 새로운 교육 방법이 제시되고 있다. 본 연구에서는 u-러닝의 환경에서 수업을 효과적으로 적용하기 위해 학습자 중심의 새로운 통합수업 전략을 제안하였다. 우선 무선네트워크 기술을 효과적으로 교육에 활용하기 위하여 학습자를 중심으로 한 다양한 교육적 요소를 파악하였다. 이동 단말컴퓨터를 지원하는 3개의 핵심적인 교육 요소로 교육내용, 시간요소, 공간요소로 범주를 나누어 분석하였다. 그리고 이러한 핵심 교육 요소를 통합하여 이동형 컴퓨터 기술을 적용한 통합적 수업 전략을 제안하였다. 초등학생들을 대상으로 통합적 수업을 실시하고 그에 따른 효과성을 검증하였다. 검증 결과 통합적 수업 전략은 효과성 지표로 제시된 고차원적 사고 및 학습동기, 자기주도적 학습의 영역에서 효과적임을 알 수 있었다. 본 연구는 향후u-러닝 환경에서 학습자 중심의 수월성 교육을 촉진시키고 총체적인 통합 교육을 효과적으로 지원할 것으로 기대된다.

  • PDF

Energy Efficiency Classification of Agricultural Tractors in Korea

  • Shin, Chang-Seop;Kim, Kyeong-Uk;Kim, Kwan-Woo
    • Journal of Biosystems Engineering
    • /
    • 제37권4호
    • /
    • pp.215-224
    • /
    • 2012
  • Purpose: This study was conducted to classify the energy efficiency of 131 tractor models tested during from 2006 to 2010 in Korea. Methods: Four sub-indexes were developed using the fuel consumptions at 60% and 90% of rated speed with partial loads and at pull speeds of 3.0 km/h and 7.5 km/h with maximum drawbar pull. Weighting factors of the sub-indexes were also considered to reflect the characteristics of tractor's actual working hours in Korea. Four sub-indexes were integrated into a classification index. Using the developed classification index, a five-classification system was made on the basis of normal distribution of tractors over the classification range. Percentage of $1^{st}$ grade interval was expected to be close to 15%, $2^{nd}$ grade 20%, $3^{rd}$ grade 30%, $4^{th}$ grade 20%, $5^{th}$ grade 15%. Results: Number of $1^{st}$ grade was 21, $2^{nd}$ grade 23, $3^{rd}$ grade 39, $4^{th}$ grade 33, $5^{th}$ grade 15 among 131 models. Conclusions: Classification index was developed by integrating four sub-indexes. By the classification method using developed index, distribution of classified tractors was acceptable for practical application.

저자 순위를 이용한 개인별 연구 성과 지수 산출에 관한 연구 (A Study on Evaluation of Ideces an Individual's Scientific Productivity Using Author Rank)

  • 김완종;노경란;서진이;이혜진
    • 한국콘텐츠학회:학술대회논문집
    • /
    • 한국콘텐츠학회 2007년도 추계 종합학술대회 논문집
    • /
    • pp.468-472
    • /
    • 2007
  • 연구자 개인의 연구 성과를 측정하기 위한 연구는 2005년 Hirsch가 h-지수(index)를 제안하면서 이와 관련된 후속 논의가 매우 활발하게 진행되고 있다. h-지수를 변형시킨 g-지수도 각광을 받고 있다. 하지만 이들 지수의 경우 연구에 기여한 비율에 상관없이 해당 논문의 인용빈도만을 고려하여 지수가 정해진다는데 그 한계가 있다. 본 연구에서는 이 두 가지 지수의 단점을 보완하기 위해 각 지수에 저자의 기여도를 접목시킨 K-지수를 제안하고자 한다.

  • PDF

콘크리트 옹벽에 대한 상태평가 항목과 결함지수와의 상관관계 분석 (The Corelation Analysis between Condition Evaluation Factors and Defect Index on the Concrete Retaining Wall)

  • 성주현;변요셉;이동율;오태근
    • 한국안전학회지
    • /
    • 제30권5호
    • /
    • pp.52-58
    • /
    • 2015
  • Although lots of safety inspection and precision safety diagnosis have been conducted on concrete retaining wall, there is no comprehensive analysis on the basis of the accumulated data associated with the statistic. Especially, the concentrated management is necessary on the evaluation items that cause critical damages for the efficient performance. In this regard, this study conducted a correlation analysis between the 18 condition evaluation items and defect index for the concrete retaining wall as well as how each item affects the final defect index as much as in the manual. As a result, correlation coefficient between sliding and overturning was 0.601, which means that they have a strong correlation, and the most influential item on defect index is the condition of drainage that scored the 0.750 correlation coefficient. In addition, as a result of regression analysis, the condition of drainage with the 0.683 correlation coefficient has a strong correlation with the defect index. If the condition evaluation items are integrated or readjusted based on the results of the statistical analysis in this study, the more efficient and accurate maintenance will be possible.

웃음치료 프로그램이 지역사회 노인의 우울과 웃음지수에 미치는 효과 (The Effects of Laughter Therapy on Depression and Laughter Index in a Community-dwelling Aged)

  • 김진주;강균영;주세진
    • 동서간호학연구지
    • /
    • 제20권2호
    • /
    • pp.160-166
    • /
    • 2014
  • Purse: The purpose of this study was to examine the effect of a laughter therapy on mental health promoting like depression, laughing index of elderly. Methods: The study was conducted based on the non-equivalent control group pretest-posttest design. The participations included 12 older adults in the control group and 11 in the experiment group. Data was collected from October 1 to November 22, 2013. Experimental group participated in laughter therapy six times, once a week for 60 minutes of each session. Questionnaires were used to measure pretest and posttest levels of depression and laughing index. Results: At the end of six-week intervention, depression score (z=-2.95 p=.003) and laughter index score (z=-2.81 p=.005) was significantly decreased in the experimental group compared to the control group. Futhermore, there was a significant difference in the depression scores of the experiment group at the posttest, but no signigicant difference was found between the two groups. Conclusion: The study results suggest that the laughter therapy is an effective intervention to reduce the depression but helpful to enhance the laughing index. Therefore, it is expected that laughter therapy will serve as an emotional nursing intervention for elderly patients with depression.

PROPERTIES AND SPECTRAL BEHAVIOUR OF CLUSTER RADIO HALOS

  • FERETTI L.;BRUNETTI G.;GIOVANNINI G.;KASSIM N.;ORRU E.;SETTI G.
    • 천문학회지
    • /
    • 제37권5호
    • /
    • pp.315-322
    • /
    • 2004
  • Several arguments have been presented in the literature to support the connection between radio halos and cluster mergers. The spectral index distributions of the halos in A665 and A2163 provide a new strong confirmation of this connection, i.e. of the fact that the cluster merger plays an important role in the energy supply to the radio halos. Features of the spectral index (flattening and patches) are indication of a complex shape of the radiating electron spectrum, and are therefore in support of electron reacceleration models. Regions of flatter spectrum are found to be related to the recent merger. In the undisturbed cluster regions, instead, the spectrum steepens with the distance from the cluster center. The plot of the integrated spectral index of a sample of halos versus the cluster temperature indicates that clusters at higher temperature tend to host halos with flatter spectra. This correlation provides further evidence of the connection between radio emission and cluster mergers.

법률정보시스템의 색인에 관한 연구 -특히 2차 법률정보를 중심으로- (A Study on the Index Model for Secondary Legal Information Databases)

  • 노정란
    • 한국비블리아학회지
    • /
    • 제8권1호
    • /
    • pp.117-134
    • /
    • 1997
  • This study proves that the quoted legal text functions as the index which represents the contents of the text because of the characteristics of legal information, the automatic indexing in the secondary legal full-text databases can be possible without the assitance of the experts. In case of the establishment, amendment or repealing of law, change of words of index can be possible through revising the legal text quoted in the secondary legal full-text databases. Even when we dont input the full-text about retrospective documents, automatic indexing is also possible, and the establihment and the practice of expert knowledge and integrated databases are possible in case of the retrospective documents. This study indicates that it is necessary to have characteristic information the information experts recognize - that is to say, experimental and inherent knowledge only human being can have - built-in into the system rather than to approach the information system by the linguistic, statistic or structuralistic way, and it can be more essential and intelligent information system.

  • PDF

Evaluation Index System for Disaster Prevention Signs in Urban Shelters in China

  • Song, Chen;Zhang, Jingxing;Kim, Tae-Hwan
    • 한국화재소방학회논문지
    • /
    • 제30권1호
    • /
    • pp.81-85
    • /
    • 2016
  • Reasonable disaster prevention signs play an important role in guiding evacuation. Through the field investigation on disaster prevention signs in shelters and surrounding areas in Beijing, some problems were found in the using of sign system. Based on the principle of integrated design, evacuation and rescue requirements, it is necesssary to make further study on aspects such as, design of function, systematic consideration, humanization design, as well as the internationalization using. This paper presents an evaluation index system for disaster prevention signs. Such a system is very important for strengthening the independent guiding function of sign systems and improving evacuation efficiency. An effective connection could be realized between the internal environment of buildings, evacuation routes, and emergencey shelters.