• Journal of KIISE:Databases
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• v.33 no.3
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• pp.251-260
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• 2006

Homology searching on the primary structure (i.e., amino acid arrangement) of protein sequences is an essential part in predicting the functions and evolutionary histories of proteins. However, proteins distant in an evolutionary history do not conserve amino acid residue arrangements, while preserving their structures. Therefore, homology searching on proteins' secondary structure is quite important in finding out distant homology. In this manuscript, we propose an indexing scheme for efficient approximate searching on the secondary structure of protein sequences which can be easily implemented in RDBMS. Exploiting the concept of clustering and lookahead, the proposed indexing scheme processes three types of secondary structure queries (i.e., exact match, range match, and wildcard match) very quickly. To evaluate the performance of the proposed method, we conducted extensive experiments using a set of actual protein sequences. CSI was proved to be faster than the existing indexing methods up to 6.3 times in exact match, 3.3 times in range match, and 1.5 times in wildcard match, respectively.

• KSII Transactions on Internet and Information Systems (TIIS)
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• v.9 no.5
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• pp.1807-1824
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• 2015

As the technologies advance, mobile peer-to-peer (MP2P) networks or systems become one of the major ways to share resources and information. On such a system, the information retrieval (IR), including the development of scalable infrastructures for indexing, becomes more complicated due to a huge increase on the amount of information and rapid information change. To keep the systems on MP2P networks more reliable and consistent, the index structures need to be updated frequently. For a semantic IR system, the index structure is even more complicated than a classic IR system and generally has higher update cost. The most well-known indexing technique used in semantic IR systems is Latent Semantic Indexing (LSI), of which the index structure is generated by singular value decomposition (SVD). Although LSI performs well, updating the index structure is not easy and time consuming. In an MP2P environment, which is fully distributed and dynamic, the update becomes more challenging. In this work, we consider how to update the sematic index generated by LSI and keep the index consistent in the whole MP2P network. The proposed Concept Space Update (CSU) protocol, based on distributed 2-Phase locking strategy, can effectively achieve the objectives in terms of two measurements: coverage speed and update cost. Using the proposed effective synchronization mechanism with the efficient updates on the SVD, re-computing the whole index on the P2P overlay can be avoided and the consistency can be achieved. Simulated experiments are also performed to validate our analysis on the proposed CSU protocol. The experimental results indicate that CSU is effective on updating the concept space with LSI/SVD index structure in MP2P semantic IR systems.

• The Journal of Society for e-Business Studies
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• v.20 no.4
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• pp.61-76
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• 2015

In general, we have utilized the hierarchical concept tree as a crucial data structure for indexing huge amount of textual data. This paper proposes a generality rank-based method that can automatically develop hierarchical concept structures with the Wikipedia data. The goal of the method is to regard each of Wikipedia articles as a concept and to generate hierarchical relationships among concepts. In order to estimate the generality of concepts, we have devised a special ranking function that mainly uses the number of hyperlinks among Wikipedia articles. The ranking function is effectively used for computing the probabilistic subsumption among concepts, which allows to generate relatively more stable hierarchical structures. Eventually, a set of concept pairs with hierarchical relationship is visualized as a DAG (directed acyclic graph). Through the empirical analysis using the concept hierarchy of Open Directory Project, we proved that the proposed method outperforms a representative baseline method and it can automatically extract concept hierarchies with high accuracy.

• Proceedings of the IEEK Conference
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• 2000.07a
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• pp.294-297
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• 2000

Among the multi-dimensional query types, ranking query is needed if we want the object one by one until we satisfy for the result. In multi-dimensional indexing structures like R-tree or its variants, not many methods are introduced in this area. In this paper, we introduce new ranking query processing algorithm which use the filtering mechanism in the R-tree variants.

• Proceedings of the Korean Society for Information Management Conference
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• 1995.08a
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• pp.111-114
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• 1995

전산환경에서 유용한 색인도구로서의 통제어휘집을 구성하는 원칙과 방법을 제시하고자 전조합색인용 통제어휘집인 LC주제명표목표의 표목구조와 후조합색인용 통제어휘집인 시소러스의 용어구조를 비교하였다. 주제명표목표에서 사용되는 도치표목, 전치사로 연결된 표목, 접속사로 연결된 표목, 세목을 가진 표목을 시소러스에서 사용되는 색인구조와 비교분석 하였다. 주제명표목표가 참조구조를 시소러스체제로 변환시켰을 때 나타나는 문제점도 파악하였다.

• Proceedings of the Korea Multimedia Society Conference
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• 2004.05a
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• pp.640-643
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• 2004

기하급수적으로 증가하고 있는 방대한 양의 데이터를 효율적으로 저장하고, 검색하기 위한 방법으로 압축된 인덱스 자료구조(compressed index data structure)가 제안되었고 현재 활발히 연구되고 있다. 압축된 인덱스 자료구조란 데이터를 적절한 방법으로 색인화(indexing)하여 이를 압축(compression)된 자료구조로 저장하여, 데이터 검색의 성능저하 없이, 저장 공간을 줄일 수 있는 방법이다. 본 논문에서는 대표적인 방법으로 Ferragina와 Manzini가 제시한 FM-index를 다룬다. 이 방법을 구현하여 전체적인 성능에 영향을 미치는 요소들을 실험을 통해 분석하였다. 이를 통하여 각 파라미터들의 상관관계를 분석하고 이상적인 설정 값을 실험하였다.

• Journal of the Korean BIBLIA Society for library and Information Science
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• v.15 no.1
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• pp.23-41
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• 2004

In indexing and organizing Web resources, there have been two basic methods: automatic indexing by extracting key words and library classification schemes or subject directories of search engines. But, both methods have failed to satisfy the user's information needs, due to the lack of standard criteria and the irrationality of its structural system. In this paper I have examined the limits of library classification scheme's structures and the problems related to the nature of Web resources such as specificity and exhaustivity. I have also attempted to explain the logicality of Web resources organization by facet analysis and its strengths and limitations. In so doing, I have proposed three specific methods in using facet analysis: firstly, indexing system by facet analysis; secondly, the alternative transformation of the enumerative classification scheme into facet classification scheme; and finally, the facet model of subject directory of domestic search engine. After examining the three methods, my study concludes that a controlled vocabulary by facet analysis can be employed as a useful method in organizing Web resources.

• The Journal of the Korea Contents Association
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• v.20 no.8
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• pp.42-53
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• 2020

With the development of social network services, graph structures have been utilized to represent relationships among objects in various applications. Recently, a demand of subgraph matching in real-time graph streams has been increased. Therefore, an efficient approximate Top-k subgraph matching scheme for low latency in real-time graph streams is required. In this paper, we propose an approximate Top-k subgraph matching scheme considering data reuse in graph stream environments. The proposed scheme utilizes the distributed stream processing platform, called Storm to handle a large amount of stream data. We also utilize an existing data reuse scheme to decrease stream processing costs. We propose a distance based summary indexing technique to generate Top-k subgraph matching results. The proposed summary indexing technique costs very low since it only stores distances among vertices that are selected in advance. Finally, we provide k subgraph matching results to users by performing an approximate Top-k matching on the summary indexing. In order to show the superiority of the proposed scheme, we conduct various performance evaluations in diverse real world datasets.

• The KIPS Transactions:PartD
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• v.19D no.2
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• pp.151-160
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• 2012

Most of the distributed high-dimensional indexing structures provide a reasonable search performance especially when the dataset is uniformly distributed. However, in case when the dataset is clustered or skewed, the search performances gradually degrade as compared with the uniformly distributed dataset. We propose a method of improving the k-nearest neighbor search performance for the distributed vector approximation-tree based on the strongly clustered or skewed dataset. The basic idea is to compute volumes of the leaf nodes on the top-tree of a distributed vector approximation-tree and to assign different number of bits to them in order to assure an identification performance of vector approximation. In other words, it can be done by assigning more bits to the high-density clusters. We conducted experiments to compare the search performance with the distributed hybrid spill-tree and distributed vector approximation-tree by using the synthetic and real data sets. The experimental results show that our proposed scheme provides consistent results with significant performance improvements of the distributed vector approximation-tree for strongly clustered or skewed datasets.

• KIISE Transactions on Computing Practices
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• v.21 no.1
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• pp.70-75
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• 2015

In this paper, we explore the efficient processing of continuous range queries over a huge number of moving objects, each of which retrieves the moving objects that are currently located within a geographic query region of interest. The moving objects should continually communicate with the server to report their current locations, so as to keep the results of the continuous range queries up-to-date. However, this increases the server workload and involves a enormous amount of communication as the number of continuous range queries and the moving objects becomes enormous. In this paper, we adopt an approach where we leverage available memory and computational resources of the moving objects in order to resolve these problems. To this end, we propose a query indexing structure, referred to as the Space Partitioning Query Index(SPQI), which enables the server to efficiently cooperate with the moving objects for processing continuous range queries. SPQI improves system performance in terms of server workload and communication cost. Through simulations, we show the superiority of SPQI.