• Title/Summary/Keyword: in situ detection

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Screening for down syndrome using trophoblast retrieval and isolation of the cervix: preliminary study

  • Lee, Min Jin;Kim, Soo Hyun;Park, Hee Jin;Shim, Sung Han;Jang, Hee Yeon;Cha, Dong Hyun
    • Journal of Genetic Medicine
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    • v.17 no.2
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    • pp.68-72
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    • 2020
  • Purpose: Trisomy 21, the cause of Down syndrome (DS) with various medical problems, is the most common aneuploidy during the fetal period. For diagnosis, a non-invasive screening test using maternal blood, which cannot be confirmed and invasive confirmation test with a risk of miscarriage, may be performed. The trophoblast retrieval and isolation of the cervix (TRIC) have been proposed by some researchers as an alternative to overcome the limitations of current tests. We experimented using TRIC to identify the possibility of trisomy 21 for the first time in Asia. Materials and Methods: Three cases of DS were analyzed confirmed by invasive tests (chorionic villus sampling, amniocentesis). All samples of trophoblasts immediately were immersed in phosphate-buffered saline and processed with formalin for fixation. The trophoblasts were isolated using an anti-human leukocyte antigen-G antibody coupled to magnetic nanoparticles. β-human chorionic gonadotropin (hCG)-expressing cells were considered as trophoblast cells, and the detection rate calculated. DS was confirmed by fluorescence in situ hybridization (FISH). Results: The mean trophoblast detection rate using β-hCG was 78.1%, and the detection rate using FISH was 22.2%. In all cases, the trisomy of chromosome 21 was identified. Conclusion: Trophoblast can be obtained from the five weeks of gestation and has a high detection rate, so it is noted that it can replace the current prenatal genetic test. To realize the clinical application as a prenatal genetic test, we will need additional efforts to identify trisomy 21 as well as other chromosomal abnormalities in future large-scale studies.

Correlation Between Apoptosis and Intratumoral Microvessel Density in Non-Small Cell Lung Cancer. (비소세포 폐암에서 아포프토시스와 종양내 미세 혈관 밀도의 관계)

  • 장인석;김종우;김진국;한정호
    • Journal of Chest Surgery
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    • v.32 no.2
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    • pp.151-157
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    • 1999
  • Background: Increasing evidences from experimental studies indicate that apoptosis may be inversely related to angiogenesis in tumor progression. Material and Method: To explore how apoptosis correlates with tumor angiogenesis, we measured the apoptotic index(AI) using the terminal deoxynucleotidyl transferase method(Apop Tag In Situ Apoptosis Detection Kit, ONCOR) and the intratumoral microvessel density using the anti-CD31 monoclonal antibody in non-small cell lung cancer. Result: Statistical analysis revealed an inverse correlation between AIs and intratumoral microvessel densities in squamous cell lung carcinoma(Spearman rank correlation coefficient r=- 0.229, p=0.047). Conclusion: The results of this study demonstrated that the amount of apoptosis in squamous cell lung carcinoma may be influenced by the extent of neovascularization. This suggests that tumor angiogenesis may contribute to a reduction of apoptosis in tumor cells.

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Efficacy of Primed In Situ Labelling in Determination of HER-2 Gene Amplification and CEN-17 Status in Breast Cancer Tissue

  • Salimi, Mahdieh;Mozdarani, Hossein;Majidzadeh-A, Keivan
    • Asian Pacific Journal of Cancer Prevention
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    • v.13 no.1
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    • pp.329-337
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    • 2012
  • Considerable attention has been given to the accuracy of HER-2 testing and the correlation between the results of different testing methods. This interest reflects the growing importance of HER-2 status in the management of patients with breast cancer. In this study the detection of HER-2 gene and centromere 17 status was evaluated using dual-colour primed in situ labelling (PRINS) in comparison with fluorescence in situ hybridization (FISH). These two methods were evaluated on a series of 27 formalin fixed paraffin embedded breast carcinoma tumours, previously tested for protein overexpression by HercepTest (grouped into Hercep 1+/0, 2+ and 3+). HER-2 gene amplification (ratio${\geq}2.2$) by PRINS was found in 3:3, 6:21 and 0:3 in IHC 3+, 2+ and 1+/0 cases, respectively. Comparing FISH and IHC (immunohistochemistry), showed the same results as for PRINS and IHC. Chromosome 17 aneusomy was found in 10 of 21 IHC 2+ cases (47.6%), of which 1 (10%) showed hypodisomy (chromosome 17 copy number per cell${\leq}1.75$), 7 (70%) showed low polysomy (chromosome 17 copy number per cell=2.26 - 3.75) and 2 (20%) showed high polysomy (chromosome 17 copy number per cell ${\geq}3.76$). The overall concordance of detection of HER-2 gene amplification by FISH and PRINS was 100% (27:27). Furthermore, both the level of HER-2 amplification and copy number of CEN17 analysis results correlated well between the two methods. In conclusion, PRINS is a reliable, reproducible technique and in our opinion can be used as an additional test to determine HER-2 status in breast tumours.

Detection of SCC by Electrochemical Noise and In-Situ 3-D Microscopy

  • Xia, Da-Hai;Behnamian, Yashar;Luo, Jing-Li;Klimas, Stan
    • Corrosion Science and Technology
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    • v.16 no.4
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    • pp.194-200
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    • 2017
  • Stress-corrosion cracking (SCC) of alloy 600 and alloy 800 in 0.5 mol/L thiosulfate solution during constant strain was investigated using electrochemical noise (EN) combined with 3-D microscope techniques. The in-situ morphology observation and EN results indicate that the SCC process could be divided into three stages: (1) passive film stabilization and growth, (2) crack initiation, (3) and crack growth. Power Spectral Density (PSD) and the probability distribution obtained from EN were used as the "fingerprint" to distinguish the different processes. During passive film stabilization and growth, the current noise signals resembled "white noise": when the crack initiated, many transient peaks could be seen in the current noise and the wavelet energy at low frequency as well as the noise resistance decreased. After crack propagation, the noise amplitudes increased, particularly the white noises at low and high frequencies ($W_L$ and $W_H$) in the PSDs. Finally, the detection of metal structure corrosion in a simulated sea splash zone and pipeline corrosion in the atmosphere are established.

Geophysical Applications on the Soil-contamination Mapping and Detection of Buried Mine Tailings in the Abandoned Mine Area (폐광산의 토양오염영역 및 폐기된 광미의 탐지)

  • Lee, Sang Kyu;Hwang, Se Ho;Lee, Tai Sup
    • Economic and Environmental Geology
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    • v.30 no.4
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    • pp.371-377
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    • 1997
  • This paper presents the geophysical applications to the environmenml problem in an abandoned mine area. We would like to focus our attention on the mapping of the soil contamination and the detection of the buried mine tailings. For mapping the soil contamination. measurements of both in-situ magnetic susceptibility (k) and terrain conductivity were carried out. In-situ magnetic susceptibilities of the contaminated soil due to the acid mine drainage show higher values than those of the uncontaminated area. However. those data do not show the correlation with the degree of the soil contamination observed on the surface. The least-squares fitted formula obtained with the measured insitu magnetic susceptibilities is $k=4.8207{\times}W^{0.6332}$, where W is the $Fe^{+2}$ weight percentage. This weight gives most effect to magnetic susceptibility of the soil. Lateral variations of the soil contamination in the shallow subsurface can be detected by the electrical conductivity distributions from EM induction survey. TDIP (Time Domain Induced Polarization) and EM induction surveys were conducted to detect the buried mine tailings. From the results of TDIP, the spatial zone, which shows high chargeability-low resistivity, is interpreted as the buried mine tailings. Therefore, it is concluded that it is possible to discriminate the spatial zone from the uncontaminated ground.

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In situ Hybricization of White Spot Disease Virus Experimentally Infected Penaeid Shrimp

  • Lee, Won-Woo;Lee, Beom-Jue;Lee, Yeon-Hee;Lee, Yong-Soon;Park, Jae-Hak
    • Journal of Microbiology and Biotechnology
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    • v.10 no.2
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    • pp.215-220
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    • 2000
  • Abstract White spot disease (WSD), resulting in more than 90% mortality of aquacultured penaeid shrimp, has been reported off the southern and western coasts of Korea since 1993. The pafuogen of WSD has been identified as being a virion wifu an envelope around a central nucleocapsid, and with an average size of 167 nm in diameter and 375 nm in length. In the present study, an in situ hybridization technique was developed as a rapid. sensitive, and specific diagnostic assay for the WSD viros infection in shrimp. Furthermore. the pathological changes ofWSD, in shrimp experimentally infected with WSD viroses. were investigated. Using a biotinylated 643 bp probe obtained from a peR using primers specific to the rod-shaped virus of Penaeus japonicus (RV-PJ), positive signals were detected in both naturally and experimentally infected shrimps. The in situ hybridization revealed positive reactions in the nuclei of the stromal matrix cells in the lymphoid organ, epithelia of the gills, foregut. epidermis, and hematopoietic cells of the interstitial tissues, suggesting the presence of WSD virus. Tills result indicates that the in situ hybridization method can be useful for a rapid and sensitive detection of WSD viruses in shrimp.shrimp.

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Automated 3D scoring of fluorescence in situ hybridization (FISH) using a confocal whole slide imaging scanner

  • Ziv Frankenstein;Naohiro Uraoka;Umut Aypar;Ruth Aryeequaye;Mamta Rao;Meera Hameed;Yanming Zhang;Yukako Yagi
    • Applied Microscopy
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    • v.51
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    • pp.4.1-4.12
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    • 2021
  • Fluorescence in situ hybridization (FISH) is a technique to visualize specific DNA/RNA sequences within the cell nuclei and provide the presence, location and structural integrity of genes on chromosomes. A confocal Whole Slide Imaging (WSI) scanner technology has superior depth resolution compared to wide-field fluorescence imaging. Confocal WSI has the ability to perform serial optical sections with specimen imaging, which is critical for 3D tissue reconstruction for volumetric spatial analysis. The standard clinical manual scoring for FISH is labor-intensive, time-consuming and subjective. Application of multi-gene FISH analysis alongside 3D imaging, significantly increase the level of complexity required for an accurate 3D analysis. Therefore, the purpose of this study is to establish automated 3D FISH scoring for z-stack images from confocal WSI scanner. The algorithm and the application we developed, SHIMARIS PAFQ, successfully employs 3D calculations for clear individual cell nuclei segmentation, gene signals detection and distribution of break-apart probes signal patterns, including standard break-apart, and variant patterns due to truncation, and deletion, etc. The analysis was accurate and precise when compared with ground truth clinical manual counting and scoring reported in ten lymphoma and solid tumors cases. The algorithm and the application we developed, SHIMARIS PAFQ, is objective and more efficient than the conventional procedure. It enables the automated counting of more nuclei, precisely detecting additional abnormal signal variations in nuclei patterns and analyzes gigabyte multi-layer stacking imaging data of tissue samples from patients. Currently, we are developing a deep learning algorithm for automated tumor area detection to be integrated with SHIMARIS PAFQ.

CORRELATION ANALYSIS METHOD OF SENSOR DATA FOR PREDICTING THE FOREST FIRE

  • Shon Ho Sun;Chi Jeong Hee;Kim Eun Hee;Ryu Keun Ho;Jung Doo Yeong;kim Kyung Ok
    • Proceedings of the KSRS Conference
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    • 2005.10a
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    • pp.186-188
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    • 2005
  • Because forest fire changes the direction according to the environmental elements, it is difficult to predict the direction of it. Currently, though some researchers have been studied to which predict the forest fire occurrence and the direction of it, using the remote detection technique, it is not enough and efficient. And recently because of the development of the sensor technique, a lot of In-Situ sensors are being developed. These kinds of In-Situ sensor data are used to collect the environmental elements such as temperature, humidity, and the velocity of the wind. Accordingly we need the prediction technique about the environmental elements analysis and the direction of the forest fire, using the In-Situ sensor data. In this paper, as a technique for predicting the direction of the forest fire, we propose the correlation analysis technique about In-Situ sensor data such as temperature, humidity, the velocity of the wind. The proposed technique is based on the clustering method and clusters the In-Situ sensor data. And then it analyzes the correlation of the multivariate correlations among clusters. These kinds of prediction information not only helps to predict the direction of the forest fire, but also finds the solution after predicting the environmental elements of the forest fire. Accordingly, this technique is expected to reduce the damage by the forest fire which occurs frequently these days.

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