• Title/Summary/Keyword: half-sib progeny test

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Statistical Efficiency of Sampling Plot Size in Half-sib Progeny Test of Korean Pine (Pinus koraiensis S. et Z.) (잣나무 차대검정(次代檢定)에 있어서의 효율적(效率的)인 Plot Sampling에 관(關)한 연구(硏究))

  • Kim, Dae Eun;Chon, Sang Keun
    • Journal of Korean Society of Forest Science
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    • v.80 no.4
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    • pp.379-382
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    • 1991
  • Tree height at age 10 was used to estimate the statistical efficiencies of sampling size in the progeny test of Pinus koraiensis S. et Z. Experimental design was RCB design which consists of 25 half-sib families in each of three blocks. The number of families and blocks were fixed, therefore, the number of trees sampled per plot was the only factor that influences the environmental portion of the family mean height. Coefficient of variation, the estimate of the standard error of the family mean height, decreased with increase of sampling plot size, and became stable from 4-tree plot sampling (6.97%). The experimental error was significant from 7-tree sampling plot size. Nonlinear relationship (${\hat{Y}}=10.425e-^{0.073x}$ ; $R^2$=0.840) was found between the sampling plot size and the standard error of family mean height.

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Variations in Growth Characteristics and Stress-wave Velocities of Zelkova serrata Trees from Eight Half-sib Families Planted in Three Different Initial Spacings

  • Prasetyo, Agung;Endo, Ryota;Takashima, Yuya;Aiso, Haruna;Hidayati, Fanny;Tanabe, Jun;Ishiguri, Futoshi;Iizuka, Kazuya;Yokota, Shinso
    • Journal of Forest and Environmental Science
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    • v.31 no.3
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    • pp.235-240
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    • 2015
  • Zelkova serrata is an important hardwood species for the timber industry in Japan. Tree breeding programs for this species have mainly focused on growth characteristics such as stem diameter (D), tree height (TH), stem form, and branching. In order to fulfill timber industry needs, wood quality improvement should be included in the tree breeding program of this species. In the present study, growth characteristics, such as D and TH, and the stress-wave velocity (SWV), which is highly correlated with Young's modulus of wood, were measured for 20-year-old Z. serrata from eight half-sib families planted in a progeny test site with three different initial spacings. Significant differences in all the measured characteristics were found among the eight half-sib families. The variance components of the half-sib families for D, TH, and SWV were 27.2%, 47.3%, and 33.5%, respectively. These results indicate that all the measured characteristics of this species could be improved by tree breeding programs. In addition, only low correlation coefficients were obtained between the growth characteristics and SWV, indicating that extensive selection on SWV in tree breeding programs may not always lead to a reduction in yield volume.

Evaluation of a Fine-mapping Method Exploiting Linkage Disequilibrium in Livestock Populations: Simulation Study

  • Kim, JongJoo;Farnir, Frederic
    • Asian-Australasian Journal of Animal Sciences
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    • v.19 no.12
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    • pp.1702-1705
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    • 2006
  • A simulation study was conducted to evaluate a fine-mapping method exploiting population-wide linkage disequilibrium. Data were simulated according to the pedigree structure based on a large paternal half-sib family population with a total of 1,034 or 2,068 progeny. Twenty autosomes of 100 cM were generated with 5 cM or 1 cM marker intervals for all founder individuals in the pedigree, and marker alleles and a number of quantitative trait loci (QTL) explaining a total of 70% phenotypic variance were generated and randomly assigned across the whole chromosomes, assuming linkage equilibrium between the markers. The founder chromosomes were then descended through the pedigree to the current offspring generation, including recombinants that were generated by recombination between adjacent markers. Power to detect QTL was high for the QTL with at least moderate size, which was more pronounced with larger sample size and denser marker map. However, sample size contributed much more significantly to power to detect QTL than map density to the precise estimate of QTL position. No QTL was detected on the test chromosomes in which QTL was not assigned, which did not allow detection of false positive QTL. For the multiple QTL that were closely located, the estimates of the QTL positions were biased, except when the QTL were located on the right marker positions. Our fine mapping simulation results indicate that construction of dense maps and large sample size is needed to increase power to detect QTL and mapping precision for QTL position.