• The Plant Pathology Journal
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• 제34권4호
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• pp.269-285
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• 2018

Bacterial leaf blight is a major disease of eucalypt, especially under nursery conditions. Different bacterial species have been associated with the disease in several countries, and despite its importance worldwide, it is not clear to date whether similar disease symptoms are caused by the same or by different etiological agents. In this study, 43 bacterial strains were isolated from blighted eucalypt leaves collected in different geographic areas of Brazil and inoculated onto a susceptible eucalypt clone. Polyphasic taxonomy, including morphological, physiological, biochemical, molecular, and pathogenicity tests showed that only certain strains of Xanthomonas axonopodis caused symptoms of the disease. Strains varied in their aggressiveness, but no correlation with geographic origin was observed. MLSA-based phylogenetic analysis using concatenated dnaK, fyuA, gyrB and rpoD gene sequences allocated the strains in a well-defined clade, corresponding to Rademarker's group RG 9.6. Inoculation of nineteen plant species belonging to seven botanical families with representative strain LPF 602 showed it to be pathogenic only on Eucalyptus spp, and Corymbia spp. Based on distinct biochemical and pathogenic characteristics that differentiate the eucalypt strains from other pathovars of the X. axonopodis species, here we propose their allocation into the new pathovar X. axonopodis pv. eucalyptorum pv. nov.

• The Plant Pathology Journal
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• 제29권2호
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• pp.168-173
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• 2013

Apple ring rot disease, caused by Botryosphaeria dothidea (Moug. ex. Fr) Ces. et de Not., is one of the most important diseases on apple fruits. In this study, strain 9001 isolated from healthy apple fruits from an infested orchard was evaluated for its biocontrol activity against apple ring rot in vitro and in vivo. Strain 9001 showed obvious antagonistic activity to B. dothidea YL-1 when plated on potato dextrose agar. Soaking healthy apples in the bacterial suspensions of strain 9001 prior to artificial inoculation of fungal pathogen resulted in a dramatic decrease in disease incidence when compared to the control. Moreover, either field application in the growth season or postharvest treatment of apples from infected orchards with bacterial suspensions of strain 9001 resulted in significantly reduced disease incidence within the storage period for 4 months at room temperature. Based on the phylogenetic analysis of 16S rRNA and the gyrA gene, strain 9001 was identified as Bacillus amyloliquefaciens. These results indicated that B. amyloliquefaciens 9001 could be a promising agent in biocontrol of apple ring rot on fruit, which might help to minimize the yield loss of apple fruit during the long postharvest period.

• Mycobiology
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• 제41권4호
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• pp.234-242
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• 2013

A total of 62 bacterial isolates were obtained from Gomsohang mud flat, Mohang mud flat, and Jeju Island, Republic of Korea. Among them, the isolate CNU114001 showed significant antagonistic activity against pathogenic fungi by dual culture method. The isolate CNU114001 was identified as Bacillus amyloliquefaciens by morphological observation and molecular data analysis, including 16SrDNA and gyraseA (gyrA) gene sequences. Antifungal substances of the isolate were extracted and purified by silica gel column chromatography, thin layer chromatography, and high performance liquid chromatography. The heat and UV ray stable compound was identified as iturin, a lipopeptide (LP). The isolate CNU114001 showed broad spectrum activity against 12 phytopathogenic fungi by dual culture method. The semi purified compound significantly inhibits the mycelial growth of pathogenic fungi (Alternaria panax, Botrytis cinera, Colletotrichum orbiculare, Penicillium digitatum, Pyricularia grisea and Sclerotinia sclerotiorum) at 200 ppm concentration. Spore germ tube elongation of Botrytis cinerea was inhibited by culture filtrate of the isolate. Crude antifungal substance showed antagonistic activity against cucumber scleotiorum rot in laboratory, and showed antagonistic activity against tomato gray mold, cucumber, and pumpkin powdery mildew in greenhouse condition.

• 대한수의학회지
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• 제56권2호
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• pp.129-131
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• 2016

Five eastern great egrets with a history of ataxia, wry neck, and wet feathers were submitted to the Veterinary Diagnostic Center for pathologic examination. Slightly enlarged livers with diffuse white-grayish nodules were observed. Microscopically, the hepatic and lung parenchyma contained granulomatous lesions consisting of central necrosis. Some hearts showed myofiber necrosis with infiltration of histiocytes and heterophils. Partial 16SrRNA and gyrB gene sequences of all isolates showed high similarities (99-100%) to those of Salmonella (S.) enterica subsp. enterica. Based on pathological and molecular biological results, S. enterica subsp. enterica systemic infections were diagnosed in eastern great egrets of Korea.

• Asian Pacific Journal of Cancer Prevention
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• 제17권1호
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• pp.285-287
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• 2016

Background: The efficacy of standard treatment of Helicobacter pylori (H. pylori) is declining because of antibiotic resistance. Clarithromycin resistance is also increasing in many Asian countries. The aim of this study was to determine the antibiotic susceptibility patterns of H. pylori infection and clinical association in Laos. Materials and Methods: A total of 329 Lao dyspeptic patients who underwent gastroscopy at Mahosot Hospital, Vientiane, Laos during December 2010-March 2012 were enrolled in this study. During gastroscopy, 4 biopsies were collected (2 each from the antrum and body) for CLO-test and histopathology. Only the positive CLO-test gastric tissues was stored at $-80^{\circ}C$ in a freezer until DNA was extracted and a GenoType$^{(R)}$HelicoDR test was conducted for detecting mutations in the rrl gene encoding 23S rRNA (clarithromycin resistance) and mutations in gyrA gene (fluoroquinolone resistance). Results: Of the total, 119 Lao patients (36.2%) were infected with H. pylori including 59 males (49.6%) and 60 females (50.4%) with a mean age of 46 years. Clarithromycin and fluoroquinolone resistance of H. pylori infection was demonstrated in 15 (12.6%) and 16 strains (13.4%) respectively. In clarithromycin resistance, the number of patients who had education above primary school and $BMI{\geq}25kg/m^2$ were significantly higher than those who had education below primary school and BMI<$25kg/m^2$ (23.1% vs 7.5%, P-value= 0.036 and 20.5% vs 8%, P-value= 0.048, respectively). In fluoroquinolone resistance, the number of lowland Lao was significantly higher than those of non-lowland (highland and midland) Lao ethnic groups (16.7% vs 0%, P-value= 0.039). Conclusions: H. pylori infections remain common in Laos. Clarithromycin and fluoroquinolone resistance with H. pylori infection are growing problems. Education above primary school and $BMI{\geq}25kg/m^2$ might be predictors for clarithromycin resistance and lowland Lao ethnicity might be predictors for fluoroquinolone resistance with H. pylori infection in Laos.

• 한국어병학회지
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• 제36권2호
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• pp.277-286
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• 2023

Korean rockfish, Sebastes schlegelii, is a representative bony fish that belongs to the family Scorpaenidae and the order Scorpaeniformes. It has high ecological and economic value and is widely cultivated in many East Asian countries, including South Korea, Japan and China. One of streptococci, Streptococcus iniae, is Gram-positive cocci with a negative reaction for catalase and oxidase. The Korean rockfish shows clinical signs when infected with S. iniae, such as body darkening, bleeding, enlarged kidneys, blurred eyes, abdominal distension, etc., ultimately leading to death. The Korean rockfish causes significant economic losses every year in South Korea due to streptococcosis. In this study, we identified bacteria from the fish using polymerase chain reaction and conducted analyses of hemolytic activity and biochemical tests using API 20 STREP and API ZYM systems. Results of confirming the hemolytic activity (n=4) observed in alpha-type hemolysis (25%), beta-type hemol- ysis (50%), and gamma-type hemolysis (25%) of isolates. The biochemical test results exhibited sig- nificant variation among S. iniae. Additionally, we performed intraperitoneal injection with S. iniae in the fish and analyzed the phylogenetic tree using housekeeping genes of S. iniae, including cpsD, arcC, glnA, groEL, gyrB, mutS, pheT, prkC, rpoB, and tkt, via multilocus sequence typing (MLST). The lethal dose (LD₅₀) showed strong pathogenicity, such as 3.34 × 10 colony-forming unit (CFU)/ml for 23FBStr0601 strain and 7.16 × 10 CFU/ml for 23FBStr0602 strain. 23FBStr0603 strain showed relatively low pathogenicity at 1.73 × 10⁵ CFU/ml. The strains 23FBStr0601 and 23FBStr0602, which showed strong pathogenicity, clustered into one monophyletic group. The 23FBStr0603 strain showed weak pathogenicity and formed a monophyletic group with KCTC 3657.

• The Plant Pathology Journal
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• 제40권1호
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• pp.48-58
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• 2024

The oldest and most extensively cultivated form of millet, known as pearl millet (Pennisetum glaucum (L.) R. Br. Syn. Pennisetum americanum (L.) Leeke), is raised over 312.00 lakh hectares in Asian and African countries. India is regarded as the significant hotspot for pearl millet diversity. In the Indian state of Haryana, where pearl millet is grown, a new and catastrophic bacterial disease known as stem rot of pearl millet spurred by the bacterium Klebsiella aerogenes (formerly Enterobacter) was first observed during fall 2018. The disease appears in form of small to long streaks on leaves, lesions on stem, and slimy rot appearance of stem. The associated bacterium showed close resemblance to Klebsiella aerogenes that was confirmed by a molecular evaluation based on 16S rDNA and gyrA gene nucleotide sequences. The isolates were also identified to be Klebsiella aerogenes based on biochemical assays, where Klebsiella isolates differed in D-trehalose and succinate alkalisation tests. During fall 2021-2023, the disease has spread all the pearl millet-growing districts of the state, extending up to 70% disease incidence in the affected fields. The disease is causing considering grain as well as fodder losses. The proposed scale, consisting of six levels (0-5), is developed where scores 0, 1, 2, 3, 4, and 5 have been categorized as highly resistant, resistant, moderately resistant, moderately susceptible, susceptible, and highly susceptible disease reaction, respectively. The disease cycle, survival of pathogen, and possible losses have also been studied to understand other features of the disease.

• 식물병연구
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• 제29권4호
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• pp.390-398
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• 2023

본 연구에서는 사과 겹무늬썩음병을 유발하는 Botryosphaeria dothidea를 억제하는 길항미생물을 선발하였고, 선발한 길항미생물의 항균 활성과 길항 효소 생성 여부를 확인하였다. 선발된 길항미생물 중 4종은 Bacillus velezensis로 동정되었고, 1종은 B. amyloliquefaciens로 동정되었으며 이 길항미생물은 모두 겹무늬썩음병균에 강한 항균 활성을 가지고 있었다. 또한 선발된 5종의 길항미생물은 탄저병균인 Colletotrichum fructicola, 줄기마름병인 Diaporthe eres도 효과적으로 균사생장을 억제하였다. 선발된 길항미생물을 대상으로 cellulase, protease, phosphate solubilization 효소 활성을 분석한 결과 모두 효소를 분비하여 병원균의 생장을 억제 및 사멸시키고 식물 생장촉진 활성을 가지는 것으로 확인되었다. 사과 과실에서 겹무늬썩음병균과 선발된 길항미생물을 동시 접종하여 발병 억제 효과를 검정한 결과 B. velezensis 23-168 균주가 가장 효과적으로 발병을 억제하였다. 따라서 선발된 5종의 길항미생물은 사과 진균 방제를 위한 기초자료로 사용할 수 있을 것으로 생각된다.

• KSBB Journal
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• 제18권6호
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• pp.522-528
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• 2003

본 연구는 식중독 환자로부터 분리한 장염비브리오균 120 균주를 세균학적 특성시험, 항균제 감수성 여부, 독소 유전자와 독소조절유전자의 검출 및 보유 여부를 PCR, RPLA 로 시험하였으며, 각 지역간의 분리 세균을 GS-PCR, PFGE 시험으로 병원체 상관 관계를 분석한 결과 다음과 같은 결론을 얻었다. 장염비브리오균은 0%의 NaCl 농도에서는 성장을 보이지 않았고, 8% NaCl이 첨가된 농도에서는 성장을 보였다. 국내 설사환자의 장염비브리오균의 O, K 혈청형은 17가지로 나타났으며, 이 중 O3:K6형이 68.3%로 가장 많았다. Ampicillin 등 18가지 항균제 시험에서 Ampicillin, Ticacillin에 높은 내성을 보였으며, Ampicillin, Ticacillin, Vancomycin에 동시 내성을 나타낸 경우가 52.5%로 나타났다. 독소조절 유전자 toxR은 PCR시험에서 시험균주 모두 368bp 크기의 유전자를 가지고 있었으며 장염 비브리오균의 조기진단에 유용한 것으로 확인되었고, 독소유전자 tdh는 120균주 중 109 균주만이 199bp 크기의 유전자를 보유하고 11균주가 음성이었다. trh 독소 유전자를 보유한 균주는 시험균주 중 3 균주만이 250bp 크기의 유전자를 보유하고 있었으며, tdh, trh 유전자를 동시에 가지고 있는 균주는 3균주로 이 균주의 TDH 독소 생성능은 x16 정도로 독소 생성능이 미약했다. 독소생성 Kanagawa 시험에서 120균주 중 107균주가 양성반응 을 나타내었으며, Kanagawa 양성반응을 보인 균주은 모두 tdh 유전자를 보유하고 있었다. Group Specific-PCR에서 최근에 유행을 일으키는 O3:K6 혈청형의 유연관계를 찾는데 유용한 것으로 나타났다. 조절유전자 toxRS 염기서열을 분석한 결과 같은 혈청형이라도 3균주는 7개의 염기서열 차이를 나타내었으며, 이는 현재 유행을 일으키는 균주와는 다른 균주임을 확인하였다. PFGE로 보다 더 세분화하여 혈청관계를 분류할 수 있었으며, 식중독 환자 유래 장염비브리오균은 3가지 type으로 나타났으며, 이들 균주 사이에는 상호 밀접한 상관관계를 나타내었다. 따라서 PFGE 기법으로 얻어진 결과는 분자 역학적으로 유용한 도구로 사용될 수 있음을 확인하였다.