• 제목/요약/키워드: gyrA

검색결과 161건 처리시간 0.02초

Biological control of powdery mildew in Korean melons through a treatment with a culture of Bacillus species

  • Lee, Sang Gil;Jeon, Nak Beom;Park, Myung Soo;Yun, Hae Keun
    • 농업과학연구
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    • 제47권4호
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    • pp.1011-1020
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    • 2020
  • Efficient management systems of facilities make it possible to manage environmental conditions properly, such as the temperature, humidity and light source required for the best growth of the crops, as well as for the mass production of fruit and vegetables with high quality every year through an advanced and protected cultivation system. Powdery mildew is a type of chronic disease that is difficult to control during the production of Korean melons under a protected cultivation system, the use of which is increasing in production areas in Korea. Two Bacillus strains isolated from soil samples showed antagonistic activities against several pathogens, specifically Botrytis cinerea, Colletotrichum gloeosporioides, and Fusarium oxysporum f.sp. melonis; they were identified as Bacillus velezensis M2 and B. amyloliquefaciens M3 in a molecular biological test of the nucleotide sequences of gyrase subunit A (gyrA). The treatment was given three times at intervals of five days with 400-fold diluted cultures of B. velezensis M2 and B. amyloliquefaciens M3. This led to the inhibition of the incidence of powdery mildew disease in Korean melon leaves, which resulted in effective control efficiency against the incidence of powdery mildew disease with control values of 87% and 65%, respectively. Cultures of antagonistic microbes tested in this study can be used to increase the efficiency as part of an environmentally friendly management scheme to prevent powdery mildew disease during the protected cultivation of crops, including Korean melons.

GRB 100905A at the Epoch of Re-ionization

  • 임명신;전이슬;장민성;최창수;강유진;전현성
    • 천문학회보
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    • 제37권1호
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    • pp.32.2-32.2
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    • 2012
  • Gamma Ray Bursts (GRBs) are the most energetic events in the universe, and are known to arise from the death of massive stars in many cases. Their extreme brightness makes it possible to detect them at very high redshift (z > 6.5), well into the epoch of re-ionization, providing us with an opportunity to investigate the deaths of the first stars when the universe was much younger than 1 Gyr. Here, we report the discovery of GRB 100905A, a GRB at $z$ - 7.5 (age of the universe at 700 Myr). Our observation revealed a strong spectral break between z and J band, allowing us to estimate its photometric redshift. Its gamma-ray light curve shows a very short duration of about 0.7 sec, the shortest duration event at z > 5. Investigation of this and three other known GRBs at z > 6.5 reveals that they are all short duration bursts. This is puzzling, considering that GRBs from death of massive stars do not show short duration. We suggest two possible explanations for this: (i) the BAT light curves of the high redshift GRBs suffered from observational selection effect where we are only observing the very tip of the light curve; (ii) the stars in the early universe had a peculiar nature that are different from ordinary stars at lower redshifts.

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Genotypic characterization of fluoroquinolone-resistant Escherichia coli isolates from edible offal

  • Son, Se Hyun;Seo, Kwang Won;Kim, Yeong Bin;Noh, Eun Bi;Lee, Keun-Woo;Oh, Tae-Ho;Kim, Seung-Joon;Song, Jae-Chan;Kim, Tae-Wan;Lee, Young Ju
    • 대한수의학회지
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    • 제60권3호
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    • pp.173-177
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    • 2020
  • Edible offal is easily contaminated by Escherichia coli (E. coli) and fluoroquinolone (FQ)-resistant E. coli is considered a serious public health problem, thus, this study investigated the genetic characteristics of FQ-resistant E. coli from edible offal. A total of 22 FQ-resistant E. coli isolates were tested. A double mutation in each gyrA and parC led the highest MIC. Four (18.2%) isolates carried plasmid-mediated quinolone resistance genes. The fimH, eaeA, escV, astA, and iucC genes were confirmed. Seventeen isolates (77.3%) were positive for plasmid replicons. The isolates showed high genetic heterogeneity based on pulsed-field gel electrophoresis patterns.

An investigation of Panax ginseng Meyer growth promotion and the biocontrol potential of antagonistic bacteria against ginseng black spot

  • Sun, Zhuo;Yang, Limin;Zhang, Lianxue;Han, Mei
    • Journal of Ginseng Research
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    • 제42권3호
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    • pp.304-311
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    • 2018
  • Background: Ginseng black spot disease resulting from Alternaria panax Whuetz is a common soil-borne disease, with an annual incidence rate higher than 20-30%. In this study, the bacterial strains with good antagonistic effect against A. panax are screened. Methods: A total of 285 bacterial strains isolated from ginseng rhizosphere soils were screened using the Kirby-Bauer disk diffusion method and the Oxford cup plate assay. We analyzed the antifungal spectrum of SZ-22 by confronting incubation. To evaluate the efficacy of biocontrol against ginseng black spot and for growth promotion by SZ-22, we performed pot experiments in a plastic greenhouse. Taxonomic position of SZ-22 was identified using morphology, physiological, and biochemical characteristics, 16S ribosomal DNA, and gyrB sequences. Results: SZ-22 (which was identified as Brevundimonas terrae) showed the strongest inhibition rate against A. panax, which showed 83.70% inhibition, and it also provided broad-spectrum antifungal effects. The inhibition efficacies of the SZ-22 bacterial suspension against ginseng black spot reached 82.47% inhibition, which is significantly higher than that of the 25% suspension concentrate azoxystrobin fungicide treatment (p < 0.05). Moreover, the SZ-22 bacterial suspension also caused ginseng plant growth promotion as well as root enhancement. Conclusion: Although the results of the outdoor pot-culture method were influenced by the pathogen inoculum density, the cropping history of the field site, and the weather conditions, B. terrae SZ-22 controlled ginseng black spot and promoted ginseng growth successfully. This study provides resource for the biocontrol of ginseng black spot.

DEBRIS DISKS AND THE ZODIACAL LIGHT EXPLORED BY THE AKARI MID-INFRARED ALL-SKY SURVEY

  • Ishihara, Daisuke;Takeuchi, Nami;Kondo, Toru;Kobayashi, Hiroshi;Kaneda, Hidehiro;Inutsuka, Shu-ichiro;Oyabu, Shinki;Nagayama, Takahiro;Fujiwara, Hideaki;Onaka, Takashi
    • 천문학논총
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    • 제32권1호
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    • pp.67-71
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    • 2017
  • Debris disks are circumstellar dust disks around main-sequence stars. They are important observational clues to understanding the planetary system formation. The zodiacal light is the thermal emission from the dust disk in our Solar system. For a comprehensive understanding of the nature and the evolution of dust disks around main-sequence stars, we try a comparative study of debris disks and the zodiacal light. We search for debris disks using the AKARI mid-infrared all-sky point source catalog. By applying accurate flux estimate of the photospheric emission based on the follow-up near-infrared observations with IRSF, we have improved the detection rate of debris disks. For a detailed study of the structure and grain properties in the zodiacal dust cloud, as an example of dust disks around main-sequence stars, we analyze the AKARI mid-infrared all-sky diffuse maps. As a result of the debris disks search, we found old (>1 Gyr) debris disks which have large excess emission compared to their age, which cannot be explained simply by the conventional steady-state evolution model. From the zodiacal light analysis, we find the possibility that the dust grains trapped in the Earth's resonance orbits have increased by a factor of ~3 in the past ~20 years. Combining these results, we discuss the non-steady processes in debris disks and the zodiacal light.

Insight into Norfloxacin Resistance of Acinetobacter oleivorans DR1: Target Gene Mutation, Persister, and RNA-Seq Analyses

  • Kim, Jisun;Noh, Jaemin;Park, Woojun
    • Journal of Microbiology and Biotechnology
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    • 제23권9호
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    • pp.1293-1303
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    • 2013
  • Antibiotic resistance of soilborne Acinetobacter species has been poorly explored. In this study, norfloxacin resistance of a soil bacterium, Acinetobacter oleivorans DR1, was investigated. The frequencies of mutant appearance of all tested non-pathogenic Acinetobacter strains were lower than those of pathogenic strains under minimum inhibitory concentration (MIC). When the quinolone-resistance-determining region of the gyrA gene was examined, only one mutant (His78Asn) out of 10 resistant variants had a mutation. Whole transcriptome analysis using a RNA-Seq demonstrated that genes involved in SOS response and DNA repair were significantly up-regulated by norfloxacin. Determining the MICs of survival cells after norfloxacin treatment confirmed some of those cells were indeed persister cells. Ten colonies, randomly selected from among those that survived in the presence of norfloxacin, did not exhibit increased MIC. Thus, both the low mutation frequency of the target gene and SOS response under norfloxacin suggested that persister formation might contribute to the resistance of DR1 against norfloxacin. The persister frequency increased without a change in MIC when stationary phase cells, low growth rates conditions, and growth-deficient dnaJ mutant were used. Taken together, our comprehensive approach, which included mutational analysis of the target gene, persister formation assays, and RNA sequencing, indicated that DR1 survival when exposed to norfloxacin is related not only to target gene mutation but also to persister formation, possibly through up-regulation of the SOS response and DNA repair genes.

Xanthomonas euvesicatoria Causes Bacterial Spot Disease on Pepper Plant in Korea

  • Kyeon, Min-Seong;Son, Soo-Hyeong;Noh, Young-Hee;Kim, Yong-Eon;Lee, Hyok-In;Cha, Jae-Soon
    • The Plant Pathology Journal
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    • 제32권5호
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    • pp.431-440
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    • 2016
  • In 2004, bacterial spot-causing xanthomonads (BSX) were reclassified into 4 species-Xanthomonas euvesicatoria, X. vesicatoria, X. perforans, and X. gardneri. Bacterial spot disease on pepper plant in Korea is known to be caused by both X. axonopodis pv. vesicatoria and X. vesicatoria. Here, we reidentified the pathogen causing bacterial spots on pepper plant based on the new classification. Accordingly, 72 pathogenic isolates were obtained from the lesions on pepper plants at 42 different locations. All isolates were negative for pectolytic activity. Five isolates were positive for amylolytic activity. All of the Korean pepper isolates had a 32 kDa-protein unique to X. euvesicatoria and had the same band pattern of the rpoB gene as that of X. euvesicatoria and X. perforans as indicated by PCR-restriction fragment length polymorphism analysis. A phylogenetic tree of 16S rDNA sequences showed that all of the Korean pepper plant isolates fit into the same group as did all the reference strains of X. euvesicatoria and X. perforans. A phylogenetic tree of the nucleotide sequences of 3 housekeeping genes-gapA, gyrB, and lepA showed that all of the Korean pepper plant isolates fit into the same group as did all of the references strains of X. euvesicatoria. Based on the phenotypic and genotypic characteristics, we identified the pathogen as X. euvesicatoria. Neither X. vesicatoria, the known pathogen of pepper bacterial spot, nor X. perforans, the known pathogen of tomato plant, was isolated. Thus, we suggest that the pathogen causing bacterial spot disease of pepper plants in Korea is X. euvesicatoria.

Successful treatment of recurrent subclinical mastitis in cows caused by enrofloxacin resistant bacteria by means of the sequential intramammary infusion of enrofloxacin HCl-2H2O and ceftiofur HCl: a clinical trial

  • Alfonseca-Silva, Edgar;Cruz-Villa, Juan Carlos;Gutierrez, Lilia;Sumano, Hector
    • Journal of Veterinary Science
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    • 제22권6호
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    • pp.78.1-78.10
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    • 2021
  • Background: Recurrent subclinical mastitis (RScM) due to resistant bacteria has low clinical and bacteriological cure rates, often requiring the culling of cows. The sequential intramammary administration of enrofloxacin hydrochloride-dihydrate (enro-C) followed by ceftiofur HCl may be useful for treating these cases. Objectives: This study assessed the bacteriological and clinical cure-efficacies of the sequentially intramammary administration of enro-C, followed by ceftiofur HCl to treat RScM in Holstein/Friesian cows. Methods: This trial was conducted in a herd with a high prevalence of RScM, and 20 Holstein/Friesian cows were included: 45% suffering subclinical mastitis and 38.9% of the mammary quarters affected. Twenty-nine bacterial isolates in vitro resistant to enro-C were obtained (coagulase-negative Staphylococcus spp, 55.2%; Staphylococcus aureus, 27.6%; Escherichia coli, 6.9%; Streptococcus uberis, 6.9%; Corynebacterium bovis, 3.4%). Polymerase chain reaction-isolated the following genes linked to enro-C resistance: chromosomal (gyrA) and plasmid (aac(6')-lb-cr). The treatments were as follows: twice-daily intramammary infusions of enro-C (300 mg/10 mL) for 5 days. Cows clinically considered treatment failures were also treated with intramammary ceftiofur (125 mg/10 mL, twice daily for 5 days. The clinical and bacteriological cure rates were carried out when completing each treatment phase and at 14 and 21 days, aided by a California mastitis test, somatic cell count, and failure to identify the initially causative bacteria. Results: Enro-C achieved 65% clinical and bacteriological cure rates, and 100% cure rates were obtained after the rescue treatment with ceftiofur HCl. Conclusions: Outstanding clinical and bacteriological cure rates in cows affected by RScM were achieved with the consecutive intramammary infusions of enro-C, followed by ceftiofur HCl.

CONSTRAINTS ON A-DECAYING COSMOLOGY FROM OBSERVATIONAL POINT OF VIEW

  • KOMIYA ZEN;KAWABATA KIYOSHI;HIRANO KOICHI;BUNYA HIROSHI;YAMAMOTO NAOTAKA
    • 천문학회지
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    • 제38권2호
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    • pp.157-160
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    • 2005
  • To constrain the values of the model parameters for the cosmological models involving the time-decaying $\Lambda$ term, we have computed sets of theoretical predictions for the N-m relation of galaxies as well as the CMB angular power spectrum: three types of variation, viz., ${\Lambda}{\propto} T^{-1},\;a^{-m}$, and $H^n$ are thereby assumed following Overduin & Cooperstock (1998), although we concentrate here on the discussion of the results obtained from the first type. Our results for the N-m relation indicate that the observed excess of the galaxy counts N in the faint region beyond the blue apparent magnitude 24 can be reasonably well accounted for with the value of ${\iota}$ in the range between 0.2 and 1. Furthermore, a comparison of our computational results of the CMB spectra with the observational data shows that the models with a mild degree of the $\Lambda$ term decay, viz., with the value of ${\iota}{\le}$0.4, are favorable. In this case, the age of our universe turns out to be larger than or equal to 14 Gyr, the lower limit inferred from some Uranium datings.

Uropathogenic Escherichia coli ST131 in urinary tract infections in children

  • Yun, Ki Wook;Lee, Mi-Kyung;Kim, Wonyong;Lim, In Seok
    • Clinical and Experimental Pediatrics
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    • 제60권7호
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    • pp.221-226
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    • 2017
  • Purpose: Escherichia coli sequence type (ST) 131, a multidrug-resistant clone causing extraintestinal infections, has rapidly become prevalent worldwide. However, the epidemiological and clinical features of pediatric infections are poorly understood. We aimed to explore the characteristics of ST131 Escherichia coli isolated from Korean children with urinary tract infections. Methods: We examined 114 uropathogenic E. coli (UPEC) isolates from children hospitalized at Chung-Ang University Hospital between 2011 and 2014. Bacterial strains were classified into STs by partial sequencing of seven housekeeping genes (adk, fumC, gyrB, icd, mdh, purA, and recA). Clinical characteristics and antimicrobial susceptibility were compared between ST131 and non-ST131 UPEC isolates. Results: Sixteen UPEC isolates (14.0%) were extended-spectrum ${\beta}-lactamase$ (ESBL)-producers; 50.0% of ESBL-producers were ST131 isolates. Of all the isolates tested, 13.2% (15 of 114) were classified as ST131. There were no statistically significant associations between ST131 and age, sex, or clinical characteristics, including fever, white blood cell counts in urine and serum, C-reactive protein, radiologic abnormalities, and clinical outcome. However, ST131 isolates showed significantly lower rates of susceptibility to cefazolin (26.7%), cefotaxime (40.0%), cefepime (40.0%), and ciprofloxacin (53.3%) than non-ST131 isolates (65.7%, 91.9%, 92.9%, and 87.9%, respectively; P<0.001 for all). ESBL was more frequently produced in ST131 (53.3%) than in non-ST131 (8.1%) isolates (P<0.01). Conclusion: ST131 E. coli isolates were prevalent uropathogens in children at a single medical center in Korea between 2011 and 2014. Although ST131 isolates showed higher rates of antimicrobial resistance, clinical presentation and outcomes of patients were similar to those of patients infected with non-ST131 isolates.