• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.279-279
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• 2022

Rice is 34% of the world's population used as a staple food. But the world population is increasing. Food security is not well protected. Improving cultivar development can address food security. Quantitative trait locus (QTL) mapping is a statistical analysis using both phenotypic and genotypic dates. The purpose of QTL mapping is to determine a gene. Increasing grain size is a way to increase yield in rice. Grain size-related genes were mapped using CNDH population obtained by cross-breeding Cheongcheong (Indica) and Nagdong (Japonica) through anther culture. Grain harvested from experimental field of Kyungpook National University in Gunwi in 2021. Genes related to grain length were detected between RM5964-RM12285, RM20924-RM20967 in chromosome 1, 7. LOD score is 5.88 and 5.6. Genes related to grain width was detected between RM289-RM18130 in chromosome 5. LOD score is 4.57. Genes related to grain length/width ratio were detected between RM5459-RM3482, RM5699-RM1211 and RM3838-RM3381 in chromosome 1, 2, 5. LOD score is 3.75, 3.14 and 3.41. 4 genes was detected in chromosome 1 and 2 genes was detected in chromosome 2 and 7 genes was detected in chromosome 5. 2 genes related to grain shape and quality were detected. 4 genes related to grain length were detected. 4 genes related to grain size were detected. 1 gene related to grain size and weight was detected. 2 genes related to grain length and weight were detected. By finding the gene related to grain size, it provides food to people threatened by food security and solves the food shortage.

• 한국육종학회지
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• 제42권4호
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• pp.357-364
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• 2010

In a previous study, we mapped 12 QTLs for 1,000 grain weight (TGW) in the 172 $BC_2F_2$ lines derived from a cross between Oryza sativa ssp. Japonica cv. Hwaseongbyeo and O. rufipogon. These QTLs explained 5.4 - 11.4% of the phenotypic variance for TGW. Marker-aided selection combined with backcrosses was employed to develop QTL-NILs for each QTL. $BC_2F_2$ lines with each target QTL were backcrossed to Hwaseongbyeo twice and then allowed to self to produce $BC_4F_5$ populations. SSR markers linked to TGW were employed to select QTL-NILs with the respective target QTL. Six QTL-NILs with the recurrent parent, Hwaseongbyeo were evaluated for nine traits for three years from 2007 and 2009. Differences were observed between each of the 6 QTL-NILs and Hwaseongbyeo in TGW. In addition to TGW, these QTL-NILs displayed differences in other agronomic traits possibly indicating a tight linkage of genes controlling these traits. The direction of the QTL for TGW in 6 QTL-NILs was consistent as in the $BC_2F_2$ lines from the same cross. Difference in TGW between each of the QTL-NILs and Hwaseongbyeo was associated with the difference in one or two grain shape traits; grain length, grain width, and grain thickness. SSR markers linked to the QTL for TGW will facilitate selection of the grain shape character in a breeding program to diversify grain shape and provide the foundation for map-based gene isolation. Also, the QTL-NILs developed in this report and the progenies from crosses between the QTL-NILs will be useful in clarifying epistatic interactions among QTLs for TGW.

• Current Research on Agriculture and Life Sciences
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• 제6권
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• pp.25-30
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• 1988

우량수도품종육성(優良水稻品種育成)을 위(爲)한 기초자료(基礎資料)를 얻고자 입(粒)의 크기가 서로 다른 벼 7개품종(個品種)을 이면교잡(二面交雜)하여 미립(米粒)의 크기와 모양에 대(對)해 잡종강세(雜種强勢), 조합능력(組合能力) 및 유전분석(遺傳分析)을 실시(實施)하여 얻어진 결과(結果)를 요약(要約)하면 다음과 같다. 1. 평균(平均) heterosis는 입장(粒長)과 장/폭비(長/幅比)에서 부(負)의 방향(方向)으로 유의(有意)하였고, 입폭(粒幅), 입후(粒厚), 입중(粒重)에서는 유의성(有意性)이 없었다. 2. 전형질(全形質)에서 일반조합능력(一般組合能力), 특정조합능력(特定組合能力) 및 정역교잡효과(正逆交雜效果)가 유의(有意)하였고, 입장(粒長), 입폭(粒幅), 입후(粒厚), 입중(粒重)에서는 상가적(相加的) 유전분산(遺傳分散)이 비상가적(非相加的) 유전분산(遺傳分散)보다 컸다. 3. 일반조합능력효과(一般組合能力效果)는 입(粒)의 크기와 입중(粒重)에서 Arborio와 BG2 등(等) 대립종(大粒種)이 정(正)의 방향(方向)으로, 장/폭비(長/幅比)에서는 BG2와 낙동(洛東)벼가 단원방향(短圓方向)으로 유의(有意)한 효과(效果)를 나타내었다. 4. 전형질(全形質)에서 부분우성(部分優性)을 나타내었으며, 우성(優性)의 방향(方向)은 입장(粒長), 입폭(粒幅), 장/폭비(長/幅比)에서 부(負)의 우성(優性)이었고 입후(粒厚)와 입중(粒重)에서는 일정(一定)하지 않았다. 5. 유효유전자수(有效遺傳子數)는 입장(粒長)과 장/폭비(長/幅比)에서 2개정도(個程度)로 추정(推定)되었고 협의(狹義)와 광의(廣義)의 유전력(遺傳力)은 전형질(全形質)에서 매우 높게 나타났다.

• 한국작물학회지
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• 제65권3호
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• pp.199-213
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• 2020

국내 육성 벼 품종의 입형 특성은 협소한 유전적 배경을 가지고 있는 것으로 알려져 있다. 본 연구는 육성품종의 입형 관련 표현형과 유전자형을 분석하여 생태형에 따른 입형 특성과 대립유전자 효과를 파악하고, 자포니카 품종에 도입된 대립유전자의 기원을 확인하고자 수행되었다. 자포니카 225, 흑미 14, 통일형 생태형 33품종 등 272품종에 대해서 현미 길이, 너비, 두께, 장폭비, 천립중의 표현형과 GW2, GS3, qGL3, qSW5, GS5, TGW6, GW7, GW8 등 8개 입형 관련 유전자형을 분석하였다. 자포니카 품종은 중단립종에 단원형, 흑미와 통일형 품종은 중립종에 중원형 입형 특성을 나타냈다. 표현형에 대한 군집분석을 통해 자포니카 품종 대부분으로 구성된 그룹 1, 흑미와 통일형 품종 위주로 구성된 그룹 2, 자포니카 품종이 포함된 그룹 3 등 세 그룹으로 나눌 수 있었다. 그룹 1은 현미 너비와 두께, 그룹 2는 장폭비와 길이, 그룹 3은 천립중에 의해 영향을 많이 받아 구분되며 그룹 1은 중단립종·단원형, 그룹 2는 중립종·중원형, 그룹 3은 장립종·단원형 입형 특성을 나타냈다. 입형 관련 대립유전자형 분석 결과 gw2 (빈도수 1.1%)와 tgw6 (0.4%) 대립유전자는 매우 드물었으며, qgl3와 gw8는 통일형 생태형에서만 존재하였고 자포니카 품종의 qSW5 유전자형은 qsw5_N이 대부분을 차지하였다. 생태형별 대립유전자 조합의 수는 자포니카 7개(Cj1-Cj7), 흑미 3개(Cj_b1-Cj_b3), 통일형 13개(CT1-CT13)로 자포니카에 비해 품종수가 적은 통일형 생태형이 더 다양하였다. 자포니카 품종의 대표 대립유전자 조합은 자포니카 Cj1, 2 (GW2-GS3_C-qGL3-qsw5_N-gs5-TGW6-gw7(GW7)-GW8)로 여기에 gw2, gs3, qSW5, GS5 대립유전자가 도입됨으로써 다양성이 확대되었다. 흑미 품종의 대표 대립유전자 조합은 Cj_b2, 3 (GW2-gs3-qGL3-qsw5_N-gs5-TGW6-gw7(GW7)-GW8)로 자포니카 대표 조합에서 GS3_C가 gs3로 치환된 조합이다. 통일형 생태형은 GW2 유전자만 다형성이 없었고 7개 유전자에서 13개 대립유전자 조합이 확인되었으며 대표조합은 CT3 (GW2-GS3_C-qgl3-qsw5_N-gs5-TGW6-GW7-gw8)이다. 우리나라 대표 품종인 '신동진'의 입형 특성은 자포니카 대립유전자 조합 Cj2에서 gs3가 도입됨으로써 중대립화되었고, gs3는 미국품종 Calrose로부터 유래한 것으로 판단된다. 국내 육성 벼 품종에 대한 입형 관련 표현형과 유전자형 분석 결과는 우리나라 벼 품종의 입형 특성을 다양화하는데 기여할 것으로 기대된다.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2023년도 춘계학술대회
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• pp.166-166
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• 2023

• 한국작물학회지
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• 제47권1호
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• pp.36-41
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• 2002

Two rice varieties, 'Oochikara' with large grain and 'Hwayeongbyeo' and their progenies (F$_1$, F$_2$, B$_1$ and B$_2$) were tested to understand gene action of morphological traits of rice grain and their relationships. The evaluated traits were 1,000-grain weight, grain length, width, thickness, length-width ratio and chalkiness of brown rice. Correlation between grain weight and chalkiness was highly significant in the all progenies, and grain length were not associated with width and thickness in an F$_2$ population. Scaling test and jonit scaling test revealed that inheritance of grain traits were fitted to additive-dominance model without epistasis. Additive effects for the traits were much greater than the dominance effects.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.17-17
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• 2022

Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO₂ penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE_CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P)>7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.243-243
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• 2022

Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO₂ penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P) >7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

• Journal of Plant Biotechnology
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• 제43권3호
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• pp.332-340
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• 2016

Seed size traits are controlled by multiple genes in crops and determine grain yield, quality and appearance. However, the molecular mechanisms controlling the size of plant seeds remain unclear. We performed functional analysis of BrPATL4 encoding Sec14-like protein to determine the genetic architecture of seed size, shape and their association analyses. We used 60 $T_3$ transgenic rice lines to evaluate seed length, seed width and seed height as seed size traits, and the ratios of these values as seed shape traits. Pleiotropic effects on general architecture included small seed size, erect panicles, decreased grain weight, reduced plant height and increased sterility, which are common to other mutants deficient in gibberellic acid (GA) biosynthesis. To test whether BrPATL4 overexpression is deleterious for GA signal transduction, we compared the relative expression of GA related gene and the growth rate of second leaf sheath supplied with exogenous $GA_3$. Overexpression of BrPATL4 did not affect GA biosynthesis or signaling pathway, with the same response shown under GA treatment compared to the wild type. However, the causal genes for the small seed phenotype (D1, SRS1, and SRS5) and the erection of panicles showed significantly decreased levels in mRNA accumulation compared to the wild type. These results suggest that the overexpression of BrPATL4 can control seed size through the suppression of those genes related to seed size regulation. Although the molecular function of BrPATL4 is not clear for small seed and erect panicles of BrPALT4 overexpression line, this study provides some clues about the genetic engineering of rice seed architecture.

• 한국작물학회지
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• 제51권spc1호
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• pp.58-66
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• 2006

통일형인 밀양23호와 자포니카인 기호벼를 교잡한 재조합자식계통을 대상으로 품질관련 특성 변이를 살펴본 결과 공시계통들에 대한 품질 관련 형질들의 변이 분포는 매우 폭 넓고 다양했으며 대부분의 형질에서 연속적인 정규분포를 보였다. 조사된 형질간의 상관관계는 립의 두께에 대하여 립폭, 심백과 복백은 고도의 정의 상관관계를 나타냈으나 심백과 알카러 붕괴도는 고도의 부의 상관관계를 보였다. 단백질 함량과는 아밀로스, Mg/K 비율에서 고도의 부의 상관을 나타냈으며, K와 지방 함량과는 고도의 정의 상관을 보였다. 밥의 물리성에서는 딱딱한 정도를 나타내는 경도와 부착성, 탄력성, 검성, 저작성에서 고도의 정의 상관을 보였다.